Wall clock time and date at job start Tue Mar 31 2020 05:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99717 * 2 1 4 4 H 1.48499 * 109.47052 * 272.94021 * 3 2 1 5 5 H 1.48496 * 109.47285 * 32.94041 * 3 2 1 6 6 H 1.48503 * 109.46970 * 152.94104 * 3 2 1 7 7 C 1.38814 * 120.00366 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99797 * 339.35014 * 7 2 1 9 9 N 1.36935 * 120.00088 * 159.34665 * 7 2 1 10 10 C 1.46929 * 120.62797 * 332.62882 * 9 7 2 11 11 C 1.53192 * 108.77464 * 233.58422 * 10 9 7 12 12 C 1.53032 * 109.31738 * 305.36974 * 11 10 9 13 13 C 1.53001 * 109.46411 * 181.38360 * 12 11 10 14 14 N 1.46495 * 109.47312 * 174.97154 * 13 12 11 15 15 C 1.34782 * 119.99927 * 180.27566 * 14 13 12 16 16 O 1.21583 * 119.99860 * 359.72303 * 15 14 13 17 17 C 1.47606 * 119.99801 * 179.73005 * 15 14 13 18 18 C 1.39720 * 120.07493 * 359.72147 * 17 15 14 19 19 C 1.37939 * 119.92011 * 179.74768 * 18 17 15 20 20 F 1.35102 * 119.96122 * 180.25430 * 19 18 17 21 21 C 1.39088 * 120.07648 * 0.51002 * 19 18 17 22 22 O 1.35816 * 119.92771 * 179.74400 * 21 19 18 23 23 C 1.39098 * 120.15116 * 359.76613 * 21 19 18 24 24 F 1.35096 * 119.96366 * 179.97438 * 23 21 19 25 25 C 1.37938 * 120.07544 * 359.97438 * 23 21 19 26 26 C 1.53044 * 109.52600 * 61.36922 * 12 11 10 27 27 C 1.46919 * 120.63167 * 152.61051 * 9 7 2 28 28 H 0.97003 * 120.00011 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.58346 * 113.80348 * 10 9 7 30 30 H 1.08995 * 109.70703 * 353.44603 * 10 9 7 31 31 H 1.08999 * 109.49692 * 185.41331 * 11 10 9 32 32 H 1.09004 * 109.49557 * 65.32231 * 11 10 9 33 33 H 1.08999 * 109.46358 * 301.35944 * 12 11 10 34 34 H 1.08998 * 109.47125 * 54.97123 * 13 12 11 35 35 H 1.09000 * 109.46859 * 294.97551 * 13 12 11 36 36 H 0.96997 * 120.00031 * 0.02562 * 14 13 12 37 37 H 1.07997 * 120.04099 * 0.02562 * 18 17 15 38 38 H 0.96696 * 114.00349 * 270.01860 * 22 21 19 39 39 H 1.07996 * 120.03439 * 179.97438 * 25 23 21 40 40 H 1.09003 * 109.49858 * 58.58098 * 26 12 11 41 41 H 1.09003 * 109.49635 * 178.67781 * 26 12 11 42 42 H 1.08998 * 109.58764 * 246.19774 * 27 9 7 43 43 H 1.09000 * 109.58797 * 6.48061 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4354 2.0824 -1.3982 5 1 1.4801 2.6340 0.7613 6 1 3.5774 1.4231 0.6369 7 6 2.0103 -1.2021 0.0005 8 1 1.5224 -2.1072 0.3308 9 7 3.3137 -1.2404 -0.4177 10 6 3.8173 -0.2594 -1.3887 11 6 4.4623 -1.0097 -2.5583 12 6 5.5290 -1.9657 -2.0197 13 6 6.1994 -2.6917 -3.1878 14 7 7.3002 -3.5162 -2.6832 15 6 8.0425 -4.2464 -3.5390 16 8 7.7952 -4.2247 -4.7293 17 6 9.1554 -5.0725 -3.0313 18 6 9.4444 -5.0941 -1.6645 19 6 10.4818 -5.8712 -1.1928 20 9 10.7588 -5.8967 0.1293 21 6 11.2465 -6.6245 -2.0774 22 8 12.2706 -7.3846 -1.6103 23 6 10.9652 -6.6008 -3.4394 24 9 11.7107 -7.3335 -4.2952 25 6 9.9258 -5.8300 -3.9172 26 6 4.8751 -2.9906 -1.0901 27 6 4.2351 -2.2628 0.0962 28 1 -0.4850 0.8401 -0.0004 29 1 4.5597 0.3798 -0.9108 30 1 2.9923 0.3507 -1.7564 31 1 4.9247 -0.2945 -3.2386 32 1 3.6997 -1.5782 -3.0906 33 1 6.2781 -1.3995 -1.4662 34 1 6.5886 -1.9597 -3.8954 35 1 5.4688 -3.3276 -3.6877 36 1 7.4972 -3.5338 -1.7336 37 1 8.8534 -4.5065 -0.9775 38 1 13.1197 -6.9231 -1.5773 39 1 9.7082 -5.8118 -4.9749 40 1 4.1085 -3.5403 -1.6365 41 1 5.6314 -3.6856 -0.7253 42 1 5.0116 -1.7870 0.6952 43 1 3.6846 -2.9751 0.7108 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097140486.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:13 Heat of formation + Delta-G solvation = -143.529802 kcal Electronic energy + Delta-G solvation = -28908.428641 eV Core-core repulsion = 24396.488759 eV Total energy + Delta-G solvation = -4511.939883 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.18454 -50.13895 -41.46744 -40.12551 -39.47873 -37.84642 -36.56310 -34.61229 -33.02461 -31.87048 -31.61583 -31.32296 -28.52083 -25.95966 -24.98603 -24.29017 -24.01113 -22.78176 -21.86533 -20.88228 -20.08136 -19.48570 -18.77111 -18.69927 -17.71920 -17.55060 -17.31382 -17.04372 -16.55509 -16.47972 -16.41900 -16.28334 -15.88885 -15.63215 -15.33208 -15.24952 -15.11156 -14.79605 -14.44631 -14.36826 -13.96642 -13.77614 -13.66197 -13.60617 -13.38834 -13.02050 -12.82885 -12.52268 -12.22707 -12.09810 -11.99282 -11.72571 -11.56450 -11.39889 -11.17999 -11.14428 -10.65270 -10.27203 -10.08522 -9.95982 -8.89409 -8.14718 -5.45668 -0.78793 -0.31832 1.31705 1.37631 1.42833 1.52039 1.90057 2.32322 2.38328 2.43594 2.93991 3.05457 3.08410 3.38391 3.41365 3.49632 3.73131 3.80572 3.90045 3.97867 4.20543 4.41766 4.43026 4.44907 4.46739 4.57712 4.63173 4.66949 4.76221 4.79994 4.83131 4.92030 5.04449 5.10994 5.20261 5.24443 5.28308 5.32126 5.34887 5.62807 5.89828 6.14912 6.40048 6.44458 6.96120 7.04902 7.66832 8.06119 9.05425 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.023327 B = 0.002182 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.054028 B =12831.916396 C =13521.683085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.041 4.041 3 Si 0.950 3.050 4 H -0.275 1.275 5 H -0.315 1.315 6 H -0.256 1.256 7 C -0.247 4.247 8 H 0.048 0.952 9 N -0.622 5.622 10 C 0.119 3.881 11 C -0.121 4.121 12 C -0.081 4.081 13 C 0.133 3.867 14 N -0.704 5.704 15 C 0.561 3.439 16 O -0.568 6.568 17 C -0.088 4.088 18 C -0.098 4.098 19 C 0.095 3.905 20 F -0.122 7.122 21 C 0.073 3.927 22 O -0.487 6.487 23 C 0.091 3.909 24 F -0.125 7.125 25 C -0.088 4.088 26 C -0.121 4.121 27 C 0.140 3.860 28 H 0.260 0.740 29 H 0.038 0.962 30 H 0.044 0.956 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.415 0.585 37 H 0.179 0.821 38 H 0.420 0.580 39 H 0.158 0.842 40 H 0.046 0.954 41 H 0.092 0.908 42 H 0.042 0.958 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.793 -10.700 -4.796 31.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.235 4.235 3 Si 0.779 3.221 4 H -0.201 1.201 5 H -0.244 1.244 6 H -0.180 1.180 7 C -0.376 4.376 8 H 0.066 0.934 9 N -0.347 5.347 10 C -0.006 4.006 11 C -0.160 4.160 12 C -0.100 4.100 13 C 0.010 3.990 14 N -0.356 5.356 15 C 0.348 3.652 16 O -0.448 6.448 17 C -0.091 4.091 18 C -0.117 4.117 19 C 0.075 3.925 20 F -0.100 7.100 21 C 0.025 3.975 22 O -0.301 6.301 23 C 0.071 3.929 24 F -0.104 7.104 25 C -0.108 4.108 26 C -0.160 4.160 27 C 0.016 3.984 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.254 0.746 37 H 0.196 0.804 38 H 0.282 0.718 39 H 0.176 0.824 40 H 0.065 0.935 41 H 0.110 0.890 42 H 0.060 0.940 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 28.113 -11.056 -5.527 30.710 hybrid contribution 0.116 0.962 0.556 1.117 sum 28.229 -10.094 -4.971 30.389 Atomic orbital electron populations 1.69984 1.07579 1.27152 1.56009 1.25961 0.95851 1.01203 1.00498 0.85854 0.78808 0.79921 0.77478 1.20147 1.24449 1.18043 1.18868 0.87115 0.93339 1.38319 0.93411 1.44512 1.07720 1.34919 1.47574 1.21400 0.96711 0.92050 0.90454 1.21882 0.97848 0.98800 0.97495 1.21204 0.97017 0.96263 0.95512 1.21378 0.87790 0.93620 0.96243 1.45825 1.32506 1.45751 1.11501 1.18059 0.81910 0.79508 0.85694 1.90821 1.70812 1.66049 1.17126 1.19373 0.97191 0.99620 0.92957 1.21491 0.96394 0.98622 0.95207 1.17502 0.97815 0.98884 0.78261 1.91578 1.93021 1.95102 1.30304 1.18566 0.94215 0.95291 0.89414 1.84816 1.20216 1.39407 1.85670 1.17522 0.93720 0.95549 0.86131 1.91551 1.74909 1.74830 1.69099 1.21260 0.92656 0.94382 1.02540 1.21987 0.99730 0.97460 0.96773 1.21144 0.92035 0.90426 0.94794 0.93093 0.94424 0.93739 0.89799 0.92955 0.88808 0.90771 0.92207 0.74613 0.80381 0.71819 0.82395 0.93463 0.89003 0.94010 0.93163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.44 13.97 21.65 0.30 -60.14 16 2 C -0.04 -2.37 5.23 84.86 0.44 -1.92 16 3 Si 0.95 45.68 24.35 68.60 1.67 47.35 16 4 H -0.27 -12.45 6.62 99.48 0.66 -11.79 16 5 H -0.32 -15.60 7.11 99.48 0.71 -14.90 16 6 H -0.26 -11.51 6.64 99.48 0.66 -10.85 16 7 C -0.25 -13.74 10.03 84.03 0.84 -12.89 16 8 H 0.05 2.94 8.06 -2.91 -0.02 2.92 16 9 N -0.62 -27.54 2.77 -699.12 -1.94 -29.48 16 10 C 0.12 4.62 4.20 86.36 0.36 4.98 16 11 C -0.12 -3.52 5.36 30.67 0.16 -3.36 16 12 C -0.08 -1.79 2.19 -10.77 -0.02 -1.81 16 13 C 0.13 2.61 5.06 86.38 0.44 3.05 16 14 N -0.70 -10.80 5.22 -466.21 -2.43 -13.23 16 15 C 0.56 10.62 7.76 86.72 0.67 11.29 16 16 O -0.57 -15.39 16.34 -3.98 -0.06 -15.45 16 17 C -0.09 -1.25 5.87 -20.09 -0.12 -1.36 16 18 C -0.10 -0.99 9.51 22.56 0.21 -0.77 16 19 C 0.10 1.16 7.30 22.40 0.16 1.32 16 20 F -0.12 -1.69 17.10 44.97 0.77 -0.92 16 21 C 0.07 0.95 6.72 22.68 0.15 1.11 16 22 O -0.49 -5.70 13.21 -91.48 -1.21 -6.91 16 23 C 0.09 1.31 7.30 22.41 0.16 1.48 16 24 F -0.13 -2.06 17.10 44.97 0.77 -1.29 16 25 C -0.09 -1.32 9.56 22.56 0.22 -1.10 16 26 C -0.12 -2.99 5.25 30.67 0.16 -2.83 16 27 C 0.14 4.74 6.52 86.36 0.56 5.30 16 28 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 29 H 0.04 1.38 7.08 -2.39 -0.02 1.36 16 30 H 0.04 1.99 4.50 -2.39 -0.01 1.98 16 31 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.09 1.75 8.14 -2.39 -0.02 1.74 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.42 3.91 5.67 -92.71 -0.53 3.38 16 37 H 0.18 0.81 6.39 -2.91 -0.02 0.79 16 38 H 0.42 0.71 9.06 -74.06 -0.67 0.04 16 39 H 0.16 2.46 7.64 -2.91 -0.02 2.43 16 40 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.09 1.55 7.15 -2.39 -0.02 1.53 16 42 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.05 1.80 7.93 -2.39 -0.02 1.78 16 Total: -1.00 -75.36 357.07 2.08 -73.28 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -0.21 Total: 4.31 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 4.42 Total: 2.48 kcal Atomic # 7 Polarization: -98.78 SS G_CDS: -4.07 Total: -102.85 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -1.27 Total: -22.36 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 1.54 Total: -2.21 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.67 Total: 47.35 kcal Total: -75.36 2.08 -73.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097140486.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.247 kcal (2) G-P(sol) polarization free energy of solvation -75.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds