Wall clock time and date at job start Tue Mar 31 2020 05:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86805 * 120.00049 * 2 1 4 4 H 1.48503 * 109.46786 * 270.00125 * 3 2 1 5 5 H 1.48495 * 109.46886 * 30.00317 * 3 2 1 6 6 H 1.48504 * 109.46915 * 150.00310 * 3 2 1 7 7 C 1.38950 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00390 * 359.97438 * 7 2 1 9 9 N 1.37107 * 120.00030 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99706 * 180.02562 * 9 7 2 11 11 O 1.21283 * 120.00169 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99259 * 179.97438 * 10 9 7 13 13 C 1.50701 * 109.46706 * 179.97438 * 12 10 9 14 14 C 1.38240 * 119.94765 * 99.80941 * 13 12 10 15 15 C 1.38654 * 120.07838 * 179.81577 * 14 13 12 16 16 C 1.39015 * 119.83723 * 0.25334 * 15 14 13 17 17 C 1.38659 * 119.82790 * 359.97438 * 16 15 14 18 18 C 1.38286 * 119.94843 * 280.00073 * 13 12 10 19 19 Br 1.89100 * 119.95660 * 0.05647 * 18 13 12 20 20 O 1.36111 * 120.78295 * 180.02562 * 16 15 14 21 21 C 1.43172 * 116.69291 * 342.73562 * 20 16 15 22 22 C 1.53474 * 108.23545 * 46.26536 * 21 20 16 23 23 O 1.36131 * 119.38850 * 179.97438 * 15 14 13 24 24 H 0.96994 * 120.00087 * 359.97438 * 1 2 3 25 25 H 0.97001 * 119.99858 * 359.97438 * 9 7 2 26 26 H 1.09000 * 109.47412 * 60.00096 * 12 10 9 27 27 H 1.08995 * 109.47797 * 299.99695 * 12 10 9 28 28 H 1.07996 * 119.95988 * 0.19818 * 14 13 12 29 29 H 1.07999 * 119.96467 * 179.97438 * 17 16 15 30 30 H 1.08997 * 109.71504 * 165.95669 * 21 20 16 31 31 H 1.09006 * 109.71056 * 286.58178 * 21 20 16 32 32 H 1.09003 * 109.70307 * 59.92448 * 22 21 20 33 33 H 1.08999 * 109.70841 * 180.54266 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5458 1.4401 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2034 -0.0011 10 6 4.0537 -2.3706 -0.0021 11 8 3.4473 -3.4209 -0.0031 12 6 5.5608 -2.3705 -0.0033 13 6 6.0631 -3.7914 -0.0037 14 6 6.4846 -4.3740 -1.1843 15 6 6.9509 -5.6798 -1.1871 16 6 6.9884 -6.4033 -0.0007 17 6 6.5599 -5.8153 1.1796 18 6 6.0979 -4.5116 1.1763 19 35 5.5137 -3.7128 2.7877 20 8 7.4429 -7.6862 0.0187 21 6 7.5101 -8.3639 -1.2407 22 6 8.1651 -7.4209 -2.2591 23 8 7.3619 -6.2398 -2.3578 24 1 -0.4850 0.8400 0.0004 25 1 3.8649 -0.3633 -0.0014 26 1 5.9248 -1.8571 0.8866 27 1 5.9235 -1.8564 -0.8933 28 1 6.4565 -3.8093 -2.1045 29 1 6.5878 -6.3755 2.1025 30 1 8.1088 -9.2690 -1.1397 31 1 6.5047 -8.6227 -1.5729 32 1 9.1678 -7.1566 -1.9233 33 1 8.2196 -7.9106 -3.2314 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097166098.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:22 Heat of formation + Delta-G solvation = -73.428650 kcal Electronic energy + Delta-G solvation = -21177.205702 eV Core-core repulsion = 17636.289777 eV Total energy + Delta-G solvation = -3540.915925 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 341.010 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.35866 -38.90392 -37.48701 -37.36895 -33.97206 -32.48512 -31.85377 -31.55233 -30.06645 -28.99506 -26.94501 -24.89512 -24.02023 -22.68735 -20.64830 -19.35573 -18.72411 -18.24068 -17.44875 -17.08669 -15.93509 -15.46586 -15.27817 -14.88561 -14.77196 -14.54102 -14.31660 -13.94795 -13.60004 -13.48354 -13.05278 -12.60074 -12.41338 -12.05379 -11.77838 -11.63464 -11.42360 -11.25282 -11.08470 -10.62541 -10.56197 -10.10974 -9.93457 -9.89770 -9.51938 -8.68209 -8.42083 -8.13550 -7.93974 -6.26823 -3.77802 1.11709 1.24729 1.81766 2.85844 3.06504 3.09678 3.10410 3.18383 3.54509 3.78779 4.01013 4.14161 4.49841 4.56292 4.64942 4.72081 4.93696 4.98810 5.13140 5.19778 5.26412 5.30780 5.55726 5.81133 5.81795 5.85482 5.98798 6.06587 6.35494 6.48660 6.73162 7.27788 7.60868 8.18594 8.63123 8.99137 9.46788 9.86301 10.86396 Molecular weight = 341.01amu Principal moments of inertia in cm(-1) A = 0.016961 B = 0.004012 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.493621 B = 6976.923908 C = 8003.160759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.041 3.959 3 Si 0.877 3.123 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.301 4.301 8 H 0.120 0.880 9 N -0.589 5.589 10 C 0.459 3.541 11 O -0.563 6.563 12 C -0.109 4.109 13 C -0.011 4.011 14 C -0.099 4.099 15 C 0.065 3.935 16 C 0.046 3.954 17 C -0.085 4.085 18 C -0.068 4.068 19 Br -0.033 7.033 20 O -0.306 6.306 21 C 0.020 3.980 22 C 0.020 3.980 23 O -0.304 6.304 24 H 0.273 0.727 25 H 0.371 0.629 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.142 0.858 29 H 0.142 0.858 30 H 0.121 0.879 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.883 -10.828 -0.010 22.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.161 4.161 3 Si 0.703 3.297 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.430 4.430 8 H 0.137 0.863 9 N -0.228 5.228 10 C 0.245 3.755 11 O -0.445 6.445 12 C -0.149 4.149 13 C -0.014 4.014 14 C -0.119 4.119 15 C 0.020 3.980 16 C 0.000 4.000 17 C -0.105 4.105 18 C -0.148 4.148 19 Br 0.053 6.947 20 O -0.221 6.221 21 C -0.056 4.056 22 C -0.055 4.055 23 O -0.219 6.219 24 H 0.083 0.917 25 H 0.203 0.797 26 H 0.117 0.883 27 H 0.113 0.887 28 H 0.160 0.840 29 H 0.160 0.840 30 H 0.139 0.861 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 19.053 -11.166 0.572 22.091 hybrid contribution 0.702 0.986 -0.505 1.311 sum 19.755 -10.180 0.067 22.224 Atomic orbital electron populations 1.69621 1.05636 1.27410 1.49606 1.25022 0.95459 0.97900 0.97740 0.86712 0.79928 0.84168 0.78892 1.19637 1.20232 1.19329 1.19430 0.79191 0.96596 1.47790 0.86267 1.42164 1.07490 1.06024 1.67086 1.19384 0.87421 0.84712 0.83990 1.90590 1.69366 1.30816 1.53727 1.20778 0.96453 0.93051 1.04657 1.18969 0.95875 0.95739 0.90814 1.20200 1.01597 0.91664 0.98397 1.18822 1.01253 0.93199 0.84755 1.18585 1.02943 0.84737 0.93722 1.20173 0.99591 0.93564 0.97171 1.21235 1.05167 0.95453 0.92921 1.96706 1.89134 1.81593 1.27273 1.86288 1.81564 1.22995 1.31256 1.23633 1.02810 0.95626 0.83493 1.23629 0.94199 0.85557 1.02141 1.86335 1.66833 1.41673 1.27026 0.91682 0.79663 0.88320 0.88716 0.83995 0.84020 0.86105 0.90330 0.90493 0.86097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.94 13.96 55.50 0.77 -25.16 16 2 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 3 Si 0.88 19.43 27.74 -169.99 -4.71 14.71 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 7 C -0.30 -8.54 10.16 -14.93 -0.15 -8.69 16 8 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 9 N -0.59 -14.04 5.09 -10.96 -0.06 -14.10 16 10 C 0.46 10.39 7.37 -10.98 -0.08 10.31 16 11 O -0.56 -15.02 15.52 5.55 0.09 -14.93 16 12 C -0.11 -1.83 5.25 -29.03 -0.15 -1.98 16 13 C -0.01 -0.19 4.43 -104.60 -0.46 -0.65 16 14 C -0.10 -1.53 9.58 -39.43 -0.38 -1.91 16 15 C 0.07 0.96 6.49 -39.14 -0.25 0.70 16 16 C 0.05 0.66 6.49 -39.14 -0.25 0.41 16 17 C -0.08 -1.27 9.70 -39.40 -0.38 -1.65 16 18 C -0.07 -1.12 6.10 -39.54 -0.24 -1.36 16 19 Br -0.03 -0.54 31.66 -68.01 -2.15 -2.69 16 20 O -0.31 -3.84 10.42 -32.86 -0.34 -4.18 16 21 C 0.02 0.17 7.26 37.40 0.27 0.44 16 22 C 0.02 0.17 7.26 37.40 0.27 0.44 16 23 O -0.30 -3.91 10.42 -32.92 -0.34 -4.25 16 24 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.37 7.76 5.76 -40.82 -0.24 7.53 16 26 H 0.10 1.50 7.14 -51.93 -0.37 1.13 16 27 H 0.09 1.30 8.00 -51.93 -0.42 0.89 16 28 H 0.14 1.95 8.03 -52.49 -0.42 1.53 16 29 H 0.14 1.88 8.06 -52.49 -0.42 1.45 16 30 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.12 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 306.38 15.07 4.62 4.62 Total: -1.00 -34.17 306.38 -7.15 -41.32 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -3.11 Total: 7.56 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -1.91 Total: -2.90 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.72 Total: -39.26 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.60 Total: -23.36 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.71 Total: 14.71 kcal Atomic # 35 Polarization: -0.54 SS G_CDS: -2.15 Total: -2.69 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.17 -7.15 -41.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097166098.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.110 kcal (2) G-P(sol) polarization free energy of solvation -34.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds