Wall clock time and date at job start Tue Mar 31 2020 05:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35679 * 117.00132 * 2 1 4 4 N 1.32276 * 119.68505 * 359.97438 * 3 2 1 5 5 C 1.31934 * 121.64904 * 180.02562 * 4 3 2 6 6 C 1.38093 * 120.83172 * 359.97438 * 5 4 3 7 7 C 1.38778 * 119.28874 * 0.29969 * 6 5 4 8 8 C 1.38431 * 118.48720 * 359.45930 * 7 6 5 9 9 C 1.50692 * 120.44565 * 180.28836 * 8 7 6 10 10 N 1.46495 * 109.47290 * 260.23175 * 9 8 7 11 11 C 1.38109 * 120.00169 * 180.02562 * 10 9 8 12 12 N 1.32858 * 120.81282 * 0.02562 * 11 10 9 13 13 C 1.32119 * 121.19293 * 179.97438 * 12 11 10 14 14 N 1.31508 * 122.64955 * 359.97438 * 13 12 11 15 15 C 1.33201 * 120.68263 * 359.97438 * 14 13 12 16 16 C 1.40818 * 120.80943 * 179.71657 * 11 10 9 17 17 C 1.41168 * 134.70330 * 0.68800 * 16 11 10 18 18 N 1.30243 * 108.47360 * 179.54300 * 17 16 11 19 19 N 1.36308 * 134.62178 * 180.02562 * 15 14 13 20 20 C 1.46502 * 125.87146 * 359.97438 * 19 15 14 21 21 C 1.50701 * 109.47138 * 90.00143 * 20 19 15 22 22 H 1.08001 * 119.99768 * 359.97438 * 21 20 19 23 23 C 1.37874 * 119.99986 * 180.02562 * 21 20 19 24 24 N 1.31521 * 119.99999 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00279 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47402 * 90.00161 * 25 23 21 27 27 H 1.48498 * 109.47314 * 210.00363 * 25 23 21 28 28 H 1.48503 * 109.46918 * 330.00189 * 25 23 21 29 29 H 1.08993 * 109.47056 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47043 * 300.00327 * 1 2 3 31 31 H 1.09004 * 109.46643 * 60.00506 * 1 2 3 32 32 H 1.07996 * 119.58422 * 180.02562 * 5 4 3 33 33 H 1.08002 * 120.35163 * 180.02562 * 6 5 4 34 34 H 1.08003 * 120.75921 * 179.71634 * 7 6 5 35 35 H 1.09003 * 109.47226 * 20.23083 * 9 8 7 36 36 H 1.09003 * 109.47205 * 140.23194 * 9 8 7 37 37 H 0.97001 * 120.00099 * 0.02562 * 10 9 8 38 38 H 1.08005 * 118.67824 * 180.02562 * 13 12 11 39 39 H 1.08007 * 125.75926 * 359.31027 * 17 16 11 40 40 H 1.08999 * 109.47364 * 210.00462 * 20 19 15 41 41 H 1.09009 * 109.46969 * 330.00508 * 20 19 15 42 42 H 0.96995 * 120.00084 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 7 1.3185 2.3143 -0.0005 5 6 1.8769 3.5097 -0.0010 6 6 3.2508 3.6491 -0.0005 7 6 4.0484 2.5134 -0.0058 8 6 3.4323 1.2738 0.0001 9 6 4.2558 0.0118 0.0013 10 7 4.3219 -0.5294 -1.3584 11 6 5.0269 -1.6911 -1.6058 12 7 5.6506 -2.3310 -0.6227 13 6 6.3266 -3.4430 -0.8507 14 7 6.4246 -3.9812 -2.0466 15 6 5.8334 -3.4148 -3.0973 16 6 5.0967 -2.2295 -2.9051 17 6 4.5893 -1.8491 -4.1663 18 7 4.9747 -2.7267 -5.0480 19 7 5.7476 -3.7144 -4.4243 20 6 6.3606 -4.8693 -5.0850 21 6 5.3989 -6.0294 -5.0634 22 1 4.4283 -5.9176 -4.6031 23 6 5.7585 -7.2336 -5.6303 24 7 4.9194 -8.2462 -5.6110 25 14 7.4375 -7.4272 -6.4258 26 1 8.4150 -7.8964 -5.4111 27 1 7.3521 -8.4198 -7.5269 28 1 7.8802 -6.1191 -6.9718 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.2516 4.3902 -0.0010 33 1 3.6996 4.6314 -0.0006 34 1 5.1254 2.5949 -0.0101 35 1 5.2631 0.2356 0.3526 36 1 3.7950 -0.7221 0.6625 37 1 3.8706 -0.0720 -2.0850 38 1 6.8180 -3.9302 -0.0214 39 1 3.9807 -0.9793 -4.3655 40 1 6.5981 -4.6135 -6.1176 41 1 7.2749 -5.1455 -4.5596 42 1 5.1722 -9.0933 -6.0101 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097199852.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:02 Heat of formation + Delta-G solvation = 127.379717 kcal Electronic energy + Delta-G solvation = -28077.232467 eV Core-core repulsion = 24060.022040 eV Total energy + Delta-G solvation = -4017.210427 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.42911 -41.08651 -38.50198 -38.20664 -36.53601 -33.94801 -33.29701 -32.08166 -31.49607 -31.19205 -29.47923 -27.83526 -27.60846 -26.31436 -23.92561 -23.37801 -23.22546 -22.52571 -21.92397 -20.06843 -18.72224 -17.99596 -17.53277 -17.34275 -17.08623 -16.54423 -16.29320 -15.85211 -15.29851 -15.22589 -14.60906 -14.42592 -14.35813 -14.12631 -13.82283 -13.80266 -13.60015 -13.44423 -13.38702 -12.71643 -12.45247 -12.35901 -12.03645 -11.90639 -11.54949 -11.27233 -11.01921 -10.96615 -10.68673 -10.31175 -10.25364 -10.10097 -10.04250 -9.67030 -9.26662 -8.92985 -8.71527 -8.64740 -8.22485 -7.62599 -6.20057 -4.22427 0.60128 0.86426 1.30325 1.93647 2.75730 2.87183 3.01193 3.08667 3.22906 3.28464 3.30258 3.47793 3.85861 4.28138 4.34795 4.37381 4.41692 4.55150 4.63111 4.71014 4.82301 4.96063 5.00520 5.04321 5.07295 5.10661 5.15523 5.28595 5.36653 5.49317 5.64084 5.65101 5.71477 5.83165 5.99898 6.27675 6.52241 6.56190 6.86377 6.88981 6.92405 7.23432 7.33375 7.41278 7.46136 7.84918 8.15528 8.33610 8.78914 8.83217 9.34814 10.92752 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020526 B = 0.002409 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.790896 B =11617.974928 C =11907.784089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.297 6.297 3 C 0.338 3.662 4 N -0.543 5.543 5 C 0.146 3.854 6 C -0.215 4.215 7 C -0.021 4.021 8 C -0.181 4.181 9 C 0.188 3.812 10 N -0.699 5.699 11 C 0.513 3.487 12 N -0.617 5.617 13 C 0.370 3.630 14 N -0.558 5.558 15 C 0.367 3.633 16 C -0.336 4.336 17 C 0.073 3.927 18 N -0.242 5.242 19 N -0.333 5.333 20 C 0.237 3.763 21 C -0.537 4.537 22 H 0.078 0.922 23 C 0.079 3.921 24 N -0.888 5.888 25 Si 0.875 3.125 26 H -0.270 1.270 27 H -0.280 1.280 28 H -0.264 1.264 29 H 0.098 0.902 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.160 0.840 33 H 0.139 0.861 34 H 0.144 0.856 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.408 0.592 38 H 0.196 0.804 39 H 0.183 0.817 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.866 25.259 13.705 28.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.203 6.203 3 C 0.158 3.842 4 N -0.266 5.266 5 C -0.010 4.010 6 C -0.235 4.235 7 C -0.047 4.047 8 C -0.185 4.185 9 C 0.064 3.936 10 N -0.332 5.332 11 C 0.260 3.740 12 N -0.348 5.348 13 C 0.077 3.923 14 N -0.283 5.283 15 C 0.120 3.880 16 C -0.354 4.354 17 C -0.122 4.122 18 N -0.057 5.057 19 N -0.119 5.119 20 C 0.119 3.881 21 C -0.575 4.575 22 H 0.096 0.904 23 C -0.125 4.125 24 N -0.525 5.525 25 Si 0.701 3.299 26 H -0.195 1.195 27 H -0.206 1.206 28 H -0.189 1.189 29 H 0.117 0.883 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.177 0.823 33 H 0.157 0.843 34 H 0.162 0.838 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.244 0.756 38 H 0.212 0.788 39 H 0.199 0.801 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.200 23.719 13.088 27.414 hybrid contribution 0.704 0.686 -0.536 1.119 sum -3.497 24.405 12.552 27.665 Atomic orbital electron populations 1.22910 0.76934 1.03379 1.02330 1.86350 1.23048 1.23920 1.86946 1.19768 0.88871 0.84969 0.90554 1.67405 1.40809 0.98819 1.19599 1.22486 0.93017 0.93694 0.91842 1.22008 0.94880 0.99896 1.06759 1.21459 1.00909 0.90575 0.91786 1.19993 0.91323 0.96738 1.10416 1.19881 0.98669 0.90815 0.84216 1.44299 1.54708 1.24148 1.10007 1.17867 0.84901 0.84534 0.86652 1.67947 1.19555 1.14064 1.33238 1.24418 0.89280 0.86418 0.92233 1.67509 1.27415 1.35204 0.98187 1.18889 0.92032 0.89658 0.87450 1.19573 1.16152 1.04398 0.95244 1.23370 1.00507 0.99209 0.89105 1.76936 1.08568 0.98384 1.21847 1.48929 1.39920 1.20849 1.02182 1.20077 0.93946 0.80618 0.93502 1.21112 1.02714 0.94108 1.39596 0.90404 1.24773 0.97304 0.95209 0.95176 1.69875 1.35681 1.02693 1.44290 0.86871 0.84429 0.78821 0.79810 1.19489 1.20556 1.18871 0.88338 0.92305 0.92175 0.82293 0.84306 0.83800 0.90395 0.89961 0.75571 0.78770 0.80052 0.93090 0.93093 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.38 101.05 1.05 1.38 16 2 O -0.30 -3.20 9.73 -18.74 -0.18 -3.39 16 3 C 0.34 3.38 7.47 -17.12 -0.13 3.25 16 4 N -0.54 -5.06 9.22 -13.33 -0.12 -5.18 16 5 C 0.15 0.97 11.18 -17.56 -0.20 0.77 16 6 C -0.22 -1.20 10.11 -39.43 -0.40 -1.60 16 7 C -0.02 -0.14 9.81 -39.31 -0.39 -0.52 16 8 C -0.18 -1.58 5.28 -104.32 -0.55 -2.13 16 9 C 0.19 1.86 5.54 -5.20 -0.03 1.83 16 10 N -0.70 -8.12 5.67 -61.26 -0.35 -8.47 16 11 C 0.51 7.99 7.55 -154.85 -1.17 6.82 16 12 N -0.62 -9.80 9.69 -13.62 -0.13 -9.93 16 13 C 0.37 6.19 12.24 -92.12 -1.13 5.06 16 14 N -0.56 -11.70 10.47 -13.97 -0.15 -11.84 16 15 C 0.37 8.10 8.04 -156.23 -1.26 6.84 16 16 C -0.34 -6.15 6.14 -106.81 -0.66 -6.81 16 17 C 0.07 1.26 11.87 -17.11 -0.20 1.06 16 18 N -0.24 -5.18 12.45 30.80 0.38 -4.80 16 19 N -0.33 -7.91 3.63 -61.64 -0.22 -8.13 16 20 C 0.24 6.02 5.26 -5.19 -0.03 5.99 16 21 C -0.54 -15.77 9.94 -34.44 -0.34 -16.11 16 22 H 0.08 2.57 8.06 -52.49 -0.42 2.15 16 23 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 24 N -0.89 -27.27 13.96 55.43 0.77 -26.49 16 25 Si 0.87 21.04 27.47 -169.99 -4.67 16.37 16 26 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 28 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 29 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 31 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 32 H 0.16 0.60 8.06 -52.49 -0.42 0.18 16 33 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 34 H 0.14 0.66 8.06 -52.48 -0.42 0.23 16 35 H 0.08 0.72 8.03 -51.93 -0.42 0.30 16 36 H 0.08 0.94 7.87 -51.93 -0.41 0.53 16 37 H 0.41 4.18 8.33 -40.82 -0.34 3.84 16 38 H 0.20 2.43 8.06 -52.48 -0.42 2.01 16 39 H 0.18 2.18 8.06 -52.48 -0.42 1.75 16 40 H 0.05 1.26 7.20 -51.93 -0.37 0.89 16 41 H 0.05 1.27 7.57 -51.92 -0.39 0.88 16 42 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 369.33 15.07 5.57 5.57 Total: -1.00 -36.20 369.33 -9.52 -45.72 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -4.90 Total: 2.53 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: -5.52 Total: 8.04 kcal Atomic # 7 Polarization: -75.03 SS G_CDS: 0.18 Total: -74.84 kcal Atomic # 8 Polarization: -3.20 SS G_CDS: -0.18 Total: -3.39 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.20 -9.52 -45.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199852.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.102 kcal (2) G-P(sol) polarization free energy of solvation -36.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds