Wall clock time and date at job start Tue Mar 31 2020 05:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35679 * 117.00132 * 2 1 4 4 N 1.32276 * 119.68505 * 359.97438 * 3 2 1 5 5 C 1.31934 * 121.64904 * 180.02562 * 4 3 2 6 6 C 1.38093 * 120.83172 * 359.97438 * 5 4 3 7 7 C 1.38778 * 119.28874 * 0.29969 * 6 5 4 8 8 C 1.38431 * 118.48720 * 359.45930 * 7 6 5 9 9 C 1.50692 * 120.44565 * 180.28836 * 8 7 6 10 10 N 1.46495 * 109.47290 * 260.23175 * 9 8 7 11 11 C 1.38109 * 120.00169 * 180.02562 * 10 9 8 12 12 N 1.32858 * 120.81282 * 0.02562 * 11 10 9 13 13 C 1.32119 * 121.19293 * 179.97438 * 12 11 10 14 14 N 1.31508 * 122.64955 * 359.97438 * 13 12 11 15 15 C 1.33201 * 120.68263 * 359.97438 * 14 13 12 16 16 C 1.40818 * 120.80943 * 179.71657 * 11 10 9 17 17 C 1.41168 * 134.70330 * 0.68800 * 16 11 10 18 18 N 1.30243 * 108.47360 * 179.54300 * 17 16 11 19 19 N 1.36308 * 134.62178 * 180.02562 * 15 14 13 20 20 C 1.46502 * 125.87146 * 359.97438 * 19 15 14 21 21 C 1.50701 * 109.47138 * 90.00143 * 20 19 15 22 22 H 1.08001 * 119.99768 * 359.97438 * 21 20 19 23 23 C 1.37874 * 119.99986 * 180.02562 * 21 20 19 24 24 N 1.31521 * 119.99999 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00279 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47402 * 90.00161 * 25 23 21 27 27 H 1.48498 * 109.47314 * 210.00363 * 25 23 21 28 28 H 1.48503 * 109.46918 * 330.00189 * 25 23 21 29 29 H 1.08993 * 109.47056 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47043 * 300.00327 * 1 2 3 31 31 H 1.09004 * 109.46643 * 60.00506 * 1 2 3 32 32 H 1.07996 * 119.58422 * 180.02562 * 5 4 3 33 33 H 1.08002 * 120.35163 * 180.02562 * 6 5 4 34 34 H 1.08003 * 120.75921 * 179.71634 * 7 6 5 35 35 H 1.09003 * 109.47226 * 20.23083 * 9 8 7 36 36 H 1.09003 * 109.47205 * 140.23194 * 9 8 7 37 37 H 0.97001 * 120.00099 * 0.02562 * 10 9 8 38 38 H 1.08005 * 118.67824 * 180.02562 * 13 12 11 39 39 H 1.08007 * 125.75926 * 359.31027 * 17 16 11 40 40 H 1.08999 * 109.47364 * 210.00462 * 20 19 15 41 41 H 1.09009 * 109.46969 * 330.00508 * 20 19 15 42 42 H 0.96995 * 120.00084 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 7 1.3185 2.3143 -0.0005 5 6 1.8769 3.5097 -0.0010 6 6 3.2508 3.6491 -0.0005 7 6 4.0484 2.5134 -0.0058 8 6 3.4323 1.2738 0.0001 9 6 4.2558 0.0118 0.0013 10 7 4.3219 -0.5294 -1.3584 11 6 5.0269 -1.6911 -1.6058 12 7 5.6506 -2.3310 -0.6227 13 6 6.3266 -3.4430 -0.8507 14 7 6.4246 -3.9812 -2.0466 15 6 5.8334 -3.4148 -3.0973 16 6 5.0967 -2.2295 -2.9051 17 6 4.5893 -1.8491 -4.1663 18 7 4.9747 -2.7267 -5.0480 19 7 5.7476 -3.7144 -4.4243 20 6 6.3606 -4.8693 -5.0850 21 6 5.3989 -6.0294 -5.0634 22 1 4.4283 -5.9176 -4.6031 23 6 5.7585 -7.2336 -5.6303 24 7 4.9194 -8.2462 -5.6110 25 14 7.4375 -7.4272 -6.4258 26 1 8.4150 -7.8964 -5.4111 27 1 7.3521 -8.4198 -7.5269 28 1 7.8802 -6.1191 -6.9718 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.2516 4.3902 -0.0010 33 1 3.6996 4.6314 -0.0006 34 1 5.1254 2.5949 -0.0101 35 1 5.2631 0.2356 0.3526 36 1 3.7950 -0.7221 0.6625 37 1 3.8706 -0.0720 -2.0850 38 1 6.8180 -3.9302 -0.0214 39 1 3.9807 -0.9793 -4.3655 40 1 6.5981 -4.6135 -6.1176 41 1 7.2749 -5.1455 -4.5596 42 1 5.1722 -9.0933 -6.0101 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097199852.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:01 Heat of formation + Delta-G solvation = 101.071391 kcal Electronic energy + Delta-G solvation = -28078.373281 eV Core-core repulsion = 24060.022040 eV Total energy + Delta-G solvation = -4018.351241 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.84284 -41.71530 -39.87514 -38.85204 -37.62430 -35.72382 -34.52750 -33.52826 -32.86545 -32.04274 -30.67707 -29.68164 -28.28171 -27.21457 -25.37395 -24.84002 -23.95850 -23.81642 -22.88369 -21.55395 -19.47452 -19.28259 -19.26592 -18.70412 -18.09529 -17.79210 -17.06182 -16.88272 -16.72216 -16.28054 -15.94206 -15.40441 -15.38936 -15.18831 -15.14860 -15.00329 -14.74896 -14.48210 -14.26570 -13.96816 -13.92243 -13.86955 -13.13956 -12.98611 -12.67771 -12.58299 -12.40178 -12.32406 -12.17448 -12.02460 -11.85473 -11.54373 -10.91911 -10.88338 -10.67507 -10.56972 -10.10191 -9.76714 -9.46112 -8.97972 -8.43385 -6.53784 -0.05354 0.03406 0.33404 0.51290 1.27206 1.33993 1.38661 1.46425 1.60120 2.06786 2.15706 2.24757 2.82946 2.88226 3.00472 3.22706 3.33421 3.37411 3.63329 3.75796 3.84298 3.87166 4.05490 4.09742 4.29788 4.40071 4.40689 4.41199 4.50775 4.56264 4.68008 4.71739 4.75700 4.86987 5.09712 5.13014 5.19792 5.26838 5.47924 5.52608 5.67600 5.84165 6.04834 6.18957 6.24878 6.45292 6.52240 6.72370 6.86317 7.08870 7.43842 8.73843 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020526 B = 0.002409 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.790896 B =11617.974928 C =11907.784089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.320 6.320 3 C 0.316 3.684 4 N -0.563 5.563 5 C 0.138 3.862 6 C -0.204 4.204 7 C -0.018 4.018 8 C -0.192 4.192 9 C 0.192 3.808 10 N -0.676 5.676 11 C 0.520 3.480 12 N -0.614 5.614 13 C 0.378 3.622 14 N -0.604 5.604 15 C 0.341 3.659 16 C -0.347 4.347 17 C 0.101 3.899 18 N -0.287 5.287 19 N -0.366 5.366 20 C 0.251 3.749 21 C -0.549 4.549 22 H 0.019 0.981 23 C 0.020 3.980 24 N -0.938 5.938 25 Si 0.954 3.046 26 H -0.258 1.258 27 H -0.271 1.271 28 H -0.243 1.243 29 H 0.106 0.894 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.186 0.814 33 H 0.171 0.829 34 H 0.168 0.832 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.417 0.583 38 H 0.233 0.767 39 H 0.234 0.766 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.457 28.664 14.498 32.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.227 6.227 3 C 0.138 3.862 4 N -0.287 5.287 5 C -0.018 4.018 6 C -0.224 4.224 7 C -0.044 4.044 8 C -0.195 4.195 9 C 0.069 3.931 10 N -0.308 5.308 11 C 0.266 3.734 12 N -0.345 5.345 13 C 0.086 3.914 14 N -0.332 5.332 15 C 0.094 3.906 16 C -0.364 4.364 17 C -0.094 4.094 18 N -0.101 5.101 19 N -0.152 5.152 20 C 0.131 3.869 21 C -0.587 4.587 22 H 0.037 0.963 23 C -0.180 4.180 24 N -0.576 5.576 25 Si 0.775 3.225 26 H -0.182 1.182 27 H -0.195 1.195 28 H -0.166 1.166 29 H 0.125 0.875 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.203 0.797 33 H 0.189 0.811 34 H 0.185 0.815 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.255 0.745 38 H 0.249 0.751 39 H 0.250 0.750 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.835 27.212 13.917 30.695 hybrid contribution 0.074 -0.128 -0.538 0.558 sum -2.762 27.083 13.379 30.334 Atomic orbital electron populations 1.22965 0.76244 1.03944 1.02364 1.86301 1.23969 1.25025 1.87411 1.19974 0.89441 0.84974 0.91858 1.67412 1.41497 0.99514 1.20325 1.23077 0.94255 0.93601 0.90836 1.22375 0.94318 1.01042 1.04621 1.21787 1.02212 0.89858 0.90493 1.19913 0.90651 0.96912 1.12034 1.19912 0.99535 0.91104 0.82516 1.44442 1.52567 1.22361 1.11388 1.17969 0.84578 0.85225 0.85634 1.68098 1.19697 1.13908 1.32766 1.25219 0.88092 0.86173 0.91908 1.67531 1.29511 1.36966 0.99175 1.19329 0.92958 0.91133 0.87178 1.19733 1.16266 1.03761 0.96677 1.24189 0.98352 0.98956 0.87884 1.76878 1.10519 0.99436 1.23314 1.48725 1.41918 1.21435 1.03158 1.19658 0.92940 0.80244 0.94050 1.21212 1.01367 0.96536 1.39573 0.96279 1.25852 1.02356 0.94302 0.95452 1.70032 1.38464 1.03573 1.45560 0.85634 0.78074 0.79870 0.78960 1.18232 1.19549 1.16621 0.87549 0.92067 0.92300 0.79678 0.81111 0.81491 0.89008 0.91536 0.74517 0.75113 0.74975 0.92534 0.92797 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 10.38 113.37 1.18 1.83 16 2 O -0.32 -6.80 9.73 -89.97 -0.88 -7.67 16 3 C 0.32 5.91 7.47 84.78 0.63 6.55 16 4 N -0.56 -9.56 9.22 -308.93 -2.85 -12.41 16 5 C 0.14 1.42 11.18 84.64 0.95 2.37 16 6 C -0.20 -1.45 10.11 22.36 0.23 -1.23 16 7 C -0.02 -0.17 9.81 22.45 0.22 0.05 16 8 C -0.19 -2.89 5.28 -19.67 -0.10 -3.00 16 9 C 0.19 3.40 5.54 85.63 0.47 3.87 16 10 N -0.68 -14.23 5.67 -347.74 -1.97 -16.20 16 11 C 0.52 15.44 7.55 133.64 1.01 16.45 16 12 N -0.61 -18.60 9.69 -197.01 -1.91 -20.51 16 13 C 0.38 12.35 12.24 180.87 2.21 14.57 16 14 N -0.60 -25.73 10.47 -198.10 -2.07 -27.81 16 15 C 0.34 15.34 8.04 134.15 1.08 16.42 16 16 C -0.35 -12.51 6.14 -21.28 -0.13 -12.64 16 17 C 0.10 3.37 11.87 85.65 1.02 4.39 16 18 N -0.29 -12.47 12.45 -56.46 -0.70 -13.17 16 19 N -0.37 -17.97 3.63 -348.92 -1.27 -19.24 16 20 C 0.25 13.15 5.26 85.63 0.45 13.60 16 21 C -0.55 -33.93 9.94 25.60 0.25 -33.68 16 22 H 0.02 1.35 8.06 -2.91 -0.02 1.33 16 23 C 0.02 1.19 5.47 84.65 0.46 1.65 16 24 N -0.94 -59.84 13.96 21.45 0.30 -59.54 16 25 Si 0.95 43.88 27.47 68.60 1.88 45.77 16 26 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 27 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 28 H -0.24 -10.27 6.54 99.48 0.65 -9.62 16 29 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.06 0.93 8.10 -2.39 -0.02 0.91 16 31 H 0.06 0.94 8.10 -2.39 -0.02 0.92 16 32 H 0.19 0.76 8.06 -2.91 -0.02 0.74 16 33 H 0.17 0.13 8.06 -2.91 -0.02 0.11 16 34 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 35 H 0.09 1.41 8.03 -2.39 -0.02 1.39 16 36 H 0.07 1.44 7.87 -2.39 -0.02 1.42 16 37 H 0.42 7.42 8.33 -92.71 -0.77 6.65 16 38 H 0.23 5.39 8.06 -2.91 -0.02 5.37 16 39 H 0.23 4.86 8.06 -2.91 -0.02 4.84 16 40 H 0.06 2.84 7.20 -2.39 -0.02 2.82 16 41 H 0.05 2.74 7.57 -2.38 -0.02 2.72 16 42 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 Total: -1.00 -85.12 369.33 0.71 -84.41 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.25 Total: 15.18 kcal Atomic # 6 Polarization: 21.27 SS G_CDS: 9.93 Total: 31.20 kcal Atomic # 7 Polarization: -158.41 SS G_CDS: -10.47 Total: -168.88 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: -0.88 Total: -7.67 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.88 Total: 45.77 kcal Total: -85.12 0.71 -84.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199852.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.480 kcal (2) G-P(sol) polarization free energy of solvation -85.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds