Wall clock time and date at job start Tue Mar 31 2020 06:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86791 * 120.00213 * 2 1 4 4 H 1.48504 * 109.47404 * 269.99974 * 3 2 1 5 5 H 1.48502 * 109.47234 * 30.00055 * 3 2 1 6 6 H 1.48503 * 109.47433 * 150.00092 * 3 2 1 7 7 C 1.37881 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00288 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99679 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.46709 * 180.02562 * 9 7 2 11 11 N 1.40059 * 125.86818 * 269.99707 * 10 9 7 12 12 C 1.30261 * 109.68869 * 180.02562 * 11 10 9 13 13 C 1.41173 * 108.46968 * 359.76595 * 12 11 10 14 14 C 1.36313 * 125.87171 * 90.00266 * 10 9 7 15 15 N 1.33198 * 134.61580 * 359.97438 * 14 10 9 16 16 C 1.31511 * 120.67951 * 180.02562 * 15 14 10 17 17 N 1.32121 * 122.64725 * 0.02562 * 16 15 14 18 18 C 1.32859 * 121.19475 * 359.97438 * 17 16 15 19 19 N 1.38103 * 120.81618 * 179.97438 * 18 17 16 20 20 C 1.46989 * 110.99794 * 359.97438 * 19 18 17 21 21 C 1.53357 * 109.09448 * 163.94783 * 20 19 18 22 22 C 1.51405 * 108.07273 * 48.80796 * 21 20 19 23 23 S 1.75597 * 125.99360 * 164.51720 * 22 21 20 24 24 C 1.75790 * 91.04237 * 180.02562 * 23 22 21 25 25 C 1.33023 * 109.60626 * 359.97438 * 24 23 22 26 26 C 1.34805 * 123.96648 * 344.51254 * 22 21 20 27 27 C 1.46910 * 111.00407 * 235.65705 * 19 18 17 28 28 H 0.97003 * 120.00226 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47249 * 59.99994 * 9 7 2 30 30 H 1.08995 * 109.46853 * 299.99692 * 9 7 2 31 31 H 1.07994 * 125.76137 * 179.97438 * 12 11 10 32 32 H 1.07998 * 118.66842 * 179.97438 * 16 15 14 33 33 H 1.09001 * 109.53039 * 44.07026 * 20 19 18 34 34 H 1.08995 * 109.53643 * 283.84018 * 20 19 18 35 35 H 1.09004 * 109.73875 * 168.44850 * 21 20 19 36 36 H 1.08992 * 109.74204 * 289.11204 * 21 20 19 37 37 H 1.08006 * 125.19637 * 180.02562 * 24 23 22 38 38 H 1.07993 * 122.16794 * 179.97438 * 25 24 23 39 39 H 1.09000 * 109.59739 * 57.09691 * 27 19 18 40 40 H 1.08997 * 109.75330 * 296.67118 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 7 2.2030 -3.6128 -0.0015 11 7 2.7371 -4.2360 -1.1363 12 6 3.5494 -5.1874 -0.7732 13 6 3.5888 -5.2276 0.6375 14 6 2.7211 -4.2204 1.1033 15 7 2.5773 -4.0534 2.4169 16 6 3.2298 -4.8172 3.2658 17 7 4.0508 -5.7762 2.8761 18 6 4.2609 -6.0207 1.5873 19 7 5.1212 -7.0248 1.1887 20 6 5.7070 -7.7085 2.3506 21 6 6.3189 -9.0385 1.8942 22 6 7.1820 -8.7665 0.6803 23 16 8.3889 -9.8505 0.0082 24 6 8.7722 -8.6914 -1.2566 25 6 8.0126 -7.6086 -1.1149 26 6 7.1243 -7.6322 -0.0459 27 6 6.1643 -6.5012 0.2964 28 1 -0.4850 0.8401 0.0004 29 1 0.6246 -2.5563 -0.8920 30 1 0.6240 -2.5575 0.8880 31 1 4.1020 -5.8338 -1.4388 32 1 3.0893 -4.6532 4.3239 33 1 4.9301 -7.8998 3.0908 34 1 6.4833 -7.0816 2.7892 35 1 6.9301 -9.4564 2.6942 36 1 5.5254 -9.7386 1.6332 37 1 9.5109 -8.8366 -2.0311 38 1 8.0821 -6.7656 -1.7863 39 1 6.7065 -5.6999 0.7985 40 1 5.7094 -6.1187 -0.6173 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200075.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:31 Heat of formation + Delta-G solvation = 167.541437 kcal Electronic energy + Delta-G solvation = -26342.239824 eV Core-core repulsion = 22671.805149 eV Total energy + Delta-G solvation = -3670.434675 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.101 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.72043 -39.88796 -38.40377 -36.66661 -33.98766 -33.22578 -31.98547 -31.51779 -29.87789 -29.34075 -27.31062 -25.72511 -24.45509 -23.47182 -23.29981 -22.58539 -21.49170 -20.06099 -18.37119 -17.85851 -17.64458 -17.05781 -16.72729 -16.18066 -15.88904 -15.25690 -14.97964 -14.85084 -14.51589 -14.35068 -13.98013 -13.63166 -13.56016 -13.27998 -13.04942 -12.88361 -12.66269 -12.20215 -12.03376 -11.78187 -11.54012 -11.41665 -11.20552 -11.09294 -10.96411 -10.83356 -10.76459 -10.32761 -10.22884 -9.85915 -9.36814 -8.86656 -8.79704 -8.63908 -8.60670 -8.36915 -7.91746 -6.25954 -4.32895 0.74321 0.97565 1.35870 1.70261 1.73900 2.40003 2.86513 2.91786 3.21715 3.26678 3.27633 3.32859 4.15285 4.27052 4.29246 4.43843 4.58215 4.60819 4.75796 4.84383 4.97439 5.05816 5.09599 5.10311 5.13423 5.17836 5.30609 5.41903 5.45306 5.60591 5.69070 5.74762 5.81703 6.00585 6.21719 6.25033 6.41770 6.57681 6.97440 6.99890 7.04658 7.24044 7.59535 7.75640 7.85767 8.09767 8.57983 8.70713 9.32398 10.82330 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.019139 B = 0.002710 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.646873 B =10330.867681 C =11039.230354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.061 0.939 9 C 0.263 3.737 10 N -0.331 5.331 11 N -0.233 5.233 12 C 0.069 3.931 13 C -0.297 4.297 14 C 0.353 3.647 15 N -0.532 5.532 16 C 0.350 3.650 17 N -0.597 5.597 18 C 0.432 3.568 19 N -0.469 5.469 20 C 0.068 3.932 21 C -0.047 4.047 22 C -0.168 4.168 23 S 0.097 5.903 24 C -0.216 4.216 25 C -0.119 4.119 26 C -0.110 4.110 27 C 0.125 3.875 28 H 0.268 0.732 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.188 0.812 32 H 0.198 0.802 33 H 0.105 0.895 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.165 0.835 38 H 0.142 0.858 39 H 0.065 0.935 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.951 -19.437 2.320 25.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.136 4.136 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.574 4.574 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.117 5.117 11 N -0.049 5.049 12 C -0.126 4.126 13 C -0.314 4.314 14 C 0.104 3.896 15 N -0.254 5.254 16 C 0.056 3.944 17 N -0.322 5.322 18 C 0.183 3.817 19 N -0.186 5.186 20 C -0.060 4.060 21 C -0.086 4.086 22 C -0.285 4.285 23 S 0.363 5.637 24 C -0.351 4.351 25 C -0.150 4.150 26 C -0.123 4.123 27 C -0.003 4.003 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.205 0.795 32 H 0.214 0.786 33 H 0.123 0.877 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.183 0.817 38 H 0.159 0.841 39 H 0.083 0.917 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 15.231 -20.123 2.239 25.336 hybrid contribution 0.722 2.272 -0.327 2.406 sum 15.952 -17.851 1.912 24.017 Atomic orbital electron populations 1.69914 1.06019 1.27717 1.49141 1.24897 0.94987 0.99385 0.94370 0.86334 0.79697 0.82170 0.78335 1.20298 1.20765 1.19761 1.21232 0.93532 0.89622 1.53008 0.92032 1.19840 0.85650 0.79772 1.00122 1.49538 1.35736 1.27755 0.98687 1.76991 1.10868 1.07683 1.09342 1.23576 0.99059 0.97577 0.92412 1.19677 1.10261 1.05859 0.95554 1.19024 0.91554 0.90478 0.88555 1.67531 1.27784 1.29938 1.00145 1.24528 0.85825 0.84674 0.99359 1.68313 1.24686 1.23753 1.15478 1.19303 0.89713 0.84911 0.87823 1.58468 1.18184 1.23371 1.18569 1.22127 0.99434 0.93492 0.90980 1.20488 0.97059 0.98157 0.92924 1.24842 1.02797 0.97822 1.03089 1.84105 1.34728 1.20794 1.24073 1.25357 1.07070 0.98034 1.04667 1.19882 0.96697 0.99594 0.98781 1.19429 0.99760 0.96164 0.96908 1.21155 0.88891 0.93135 0.97095 0.92195 0.92642 0.92204 0.79513 0.78584 0.87671 0.92500 0.89518 0.89231 0.81744 0.84064 0.91713 0.87750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.49 13.29 55.43 0.74 -24.75 16 2 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 3 Si 0.91 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.54 -15.05 9.39 -34.43 -0.32 -15.38 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.26 6.90 6.19 -5.19 -0.03 6.87 16 10 N -0.33 -7.77 3.63 -61.64 -0.22 -8.00 16 11 N -0.23 -4.91 12.45 30.80 0.38 -4.53 16 12 C 0.07 1.17 10.85 -17.10 -0.19 0.98 16 13 C -0.30 -5.35 5.75 -106.82 -0.61 -5.97 16 14 C 0.35 7.61 8.04 -156.23 -1.26 6.36 16 15 N -0.53 -10.91 10.47 -13.97 -0.15 -11.06 16 16 C 0.35 5.65 12.24 -92.12 -1.13 4.53 16 17 N -0.60 -9.15 8.63 -13.62 -0.12 -9.27 16 18 C 0.43 6.69 6.42 -154.86 -0.99 5.70 16 19 N -0.47 -5.84 4.62 -172.96 -0.80 -6.64 16 20 C 0.07 0.70 4.96 -3.59 -0.02 0.68 16 21 C -0.05 -0.39 6.50 -27.35 -0.18 -0.57 16 22 C -0.17 -1.61 6.42 -35.18 -0.23 -1.83 16 23 S 0.10 0.80 23.32 -107.50 -2.51 -1.71 16 24 C -0.22 -1.72 11.21 28.92 0.32 -1.40 16 25 C -0.12 -1.06 10.02 -41.11 -0.41 -1.47 16 26 C -0.11 -1.12 5.84 -104.79 -0.61 -1.73 16 27 C 0.13 1.40 5.32 -4.20 -0.02 1.37 16 28 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 30 H 0.06 1.65 8.14 -51.93 -0.42 1.22 16 31 H 0.19 2.35 6.70 -52.49 -0.35 2.00 16 32 H 0.20 2.35 8.06 -52.49 -0.42 1.93 16 33 H 0.11 1.12 7.27 -51.93 -0.38 0.74 16 34 H 0.06 0.60 8.06 -51.93 -0.42 0.18 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.17 0.94 8.06 -52.48 -0.42 0.52 16 38 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 40 H 0.10 1.13 5.24 -51.93 -0.27 0.86 16 LS Contribution 350.14 15.07 5.28 5.28 Total: -1.00 -31.83 350.14 -12.54 -44.37 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -4.35 Total: -0.01 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -5.78 Total: -0.09 kcal Atomic # 7 Polarization: -64.08 SS G_CDS: -0.17 Total: -64.24 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.51 Total: -1.71 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.83 -12.54 -44.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200075.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.908 kcal (2) G-P(sol) polarization free energy of solvation -31.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 180.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds