Wall clock time and date at job start Tue Mar 31 2020 05:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35677 * 117.00122 * 2 1 4 4 C 1.38916 * 119.68642 * 180.02562 * 3 2 1 5 5 C 1.38381 * 119.11268 * 179.97438 * 4 3 2 6 6 C 1.38828 * 118.48382 * 0.27787 * 5 4 3 7 7 C 1.50704 * 120.35369 * 179.70098 * 6 5 4 8 8 N 1.46494 * 109.47256 * 89.99720 * 7 6 5 9 9 C 1.38105 * 120.00120 * 180.02562 * 8 7 6 10 10 N 1.32865 * 120.81163 * 359.71688 * 9 8 7 11 11 C 1.32127 * 121.19231 * 179.69277 * 10 9 8 12 12 N 1.31502 * 122.64487 * 0.64500 * 11 10 9 13 13 C 1.33195 * 120.68556 * 359.66039 * 12 11 10 14 14 C 1.40819 * 120.81445 * 179.97438 * 9 8 7 15 15 C 1.41164 * 134.69959 * 0.02562 * 14 9 8 16 16 N 1.30254 * 108.46551 * 179.97438 * 15 14 9 17 17 N 1.36315 * 134.61362 * 180.02562 * 13 12 11 18 18 C 1.46493 * 125.87680 * 359.97438 * 17 13 12 19 19 C 1.50694 * 109.47365 * 89.99940 * 18 17 13 20 20 H 1.08003 * 120.00145 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00309 * 179.97438 * 19 18 17 22 22 N 1.31519 * 120.00031 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00144 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47212 * 89.99474 * 23 21 19 25 25 H 1.48500 * 109.47304 * 209.99955 * 23 21 19 26 26 H 1.48503 * 109.46794 * 329.99566 * 23 21 19 27 27 C 1.38046 * 119.28869 * 359.44678 * 6 5 4 28 28 N 1.31965 * 120.83742 * 0.56348 * 27 6 5 29 29 H 1.09000 * 109.47051 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46871 * 300.00319 * 1 2 3 31 31 H 1.09000 * 109.47238 * 59.99755 * 1 2 3 32 32 H 1.08003 * 120.44069 * 359.97438 * 4 3 2 33 33 H 1.08002 * 120.75464 * 179.97438 * 5 4 3 34 34 H 1.08997 * 109.46730 * 209.99594 * 7 6 5 35 35 H 1.08995 * 109.46953 * 329.99534 * 7 6 5 36 36 H 0.97002 * 120.00344 * 359.97438 * 8 7 6 37 37 H 1.07999 * 118.67686 * 180.28244 * 11 10 9 38 38 H 1.07994 * 125.76611 * 359.95926 * 15 14 9 39 39 H 1.09002 * 109.47181 * 210.00445 * 18 17 13 40 40 H 1.09000 * 109.46901 * 330.00241 * 18 17 13 41 41 H 0.97004 * 119.99518 * 180.02562 * 22 21 19 42 42 H 1.08002 * 119.58163 * 180.28217 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2740 -0.0005 5 6 4.0485 2.5132 -0.0011 6 6 3.2505 3.6491 0.0049 7 6 3.8768 5.0198 0.0113 8 7 4.0792 5.4707 -1.3677 9 6 4.6440 6.7067 -1.6143 10 7 5.0045 7.5022 -0.6130 11 6 5.5509 8.6835 -0.8402 12 7 5.7589 9.1474 -2.0529 13 6 5.4262 8.4270 -3.1226 14 6 4.8468 7.1570 -2.9330 15 6 4.5980 6.6205 -4.2148 16 7 4.9907 7.4844 -5.1070 17 7 5.5098 8.6185 -4.4697 18 6 6.0503 9.8058 -5.1361 19 6 7.5279 9.6225 -5.3684 20 1 8.0156 8.7124 -5.0516 21 6 8.2572 10.6162 -5.9862 22 7 9.5467 10.4560 -6.1893 23 14 7.4138 12.1901 -6.5347 24 1 7.4584 13.1853 -5.4335 25 1 8.1128 12.7374 -7.7251 26 1 5.9996 11.8987 -6.8816 27 6 1.8771 3.5097 -0.0005 28 7 1.3186 2.3141 -0.0001 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 4.0228 0.3695 -0.0005 33 1 5.1254 2.5946 -0.0011 34 1 3.2185 5.7176 0.5288 35 1 4.8375 4.9779 0.5246 36 1 3.8173 4.9009 -2.1078 37 1 5.8327 9.2952 0.0041 38 1 4.1568 5.6565 -4.4208 39 1 5.5468 9.9465 -6.0926 40 1 5.8872 10.6811 -4.5075 41 1 10.0598 11.1554 -6.6237 42 1 1.2518 4.3902 -0.0006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200340.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:06 Heat of formation + Delta-G solvation = 125.682737 kcal Electronic energy + Delta-G solvation = -27415.675416 eV Core-core repulsion = 23398.391402 eV Total energy + Delta-G solvation = -4017.284013 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.47487 -41.08041 -38.77411 -38.33990 -36.39753 -33.87674 -33.18203 -32.46972 -31.59593 -31.28768 -29.48639 -27.97720 -27.71159 -25.93919 -23.98437 -23.91766 -23.16528 -22.48131 -21.92144 -20.12658 -18.84130 -18.05319 -17.56410 -17.45450 -17.11390 -16.58515 -16.41870 -15.74622 -15.32522 -15.04766 -14.80841 -14.69014 -14.39641 -14.18399 -13.90108 -13.87161 -13.63671 -13.51123 -13.46217 -12.75801 -12.45749 -12.43521 -12.09689 -11.98608 -11.61513 -11.33986 -11.07414 -11.00592 -10.71196 -10.36345 -10.28554 -10.15712 -10.06305 -9.69770 -9.33221 -8.98820 -8.73828 -8.69881 -8.28366 -7.69670 -6.22358 -4.24923 0.63020 0.78765 1.24171 1.87224 2.65042 2.82025 2.96198 3.02348 3.21174 3.26768 3.28701 3.44785 3.85873 4.23153 4.26097 4.32106 4.49485 4.52475 4.57291 4.66105 4.70234 4.87250 4.90006 4.91660 5.07166 5.10180 5.13904 5.20342 5.36600 5.37619 5.47446 5.55868 5.65723 5.86331 5.96578 6.22293 6.48972 6.51862 6.76529 6.83149 6.86730 7.16043 7.30522 7.37520 7.40702 7.78692 8.10691 8.30761 8.73359 8.79920 9.32428 10.90325 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.025204 B = 0.002024 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.680792 B =13833.199843 C =14190.620769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.308 6.308 3 C 0.324 3.676 4 C -0.192 4.192 5 C -0.019 4.019 6 C -0.199 4.199 7 C 0.184 3.816 8 N -0.704 5.704 9 C 0.510 3.490 10 N -0.617 5.617 11 C 0.370 3.630 12 N -0.556 5.556 13 C 0.367 3.633 14 C -0.335 4.335 15 C 0.073 3.927 16 N -0.241 5.241 17 N -0.332 5.332 18 C 0.237 3.763 19 C -0.538 4.538 20 H 0.078 0.922 21 C 0.079 3.921 22 N -0.887 5.887 23 Si 0.875 3.125 24 H -0.270 1.270 25 H -0.280 1.280 26 H -0.264 1.264 27 C 0.162 3.838 28 N -0.542 5.542 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.410 0.590 37 H 0.196 0.804 38 H 0.184 0.816 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.268 0.732 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.049 -17.788 15.259 28.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.215 6.215 3 C 0.145 3.855 4 C -0.212 4.212 5 C -0.045 4.045 6 C -0.202 4.202 7 C 0.060 3.940 8 N -0.338 5.338 9 C 0.258 3.742 10 N -0.348 5.348 11 C 0.076 3.924 12 N -0.281 5.281 13 C 0.119 3.881 14 C -0.353 4.353 15 C -0.122 4.122 16 N -0.056 5.056 17 N -0.118 5.118 18 C 0.118 3.882 19 C -0.576 4.576 20 H 0.096 0.904 21 C -0.125 4.125 22 N -0.525 5.525 23 Si 0.701 3.299 24 H -0.195 1.195 25 H -0.205 1.205 26 H -0.189 1.189 27 C 0.005 3.995 28 N -0.265 5.265 29 H 0.115 0.885 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.161 0.839 33 H 0.163 0.837 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.246 0.754 37 H 0.213 0.787 38 H 0.200 0.800 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -17.250 -17.065 14.611 28.324 hybrid contribution 0.120 0.093 -0.487 0.510 sum -17.130 -16.972 14.124 27.946 Atomic orbital electron populations 1.22886 0.76979 1.03075 1.02612 1.86249 1.23144 1.24570 1.87546 1.19946 0.89508 0.84769 0.91239 1.21108 0.91990 0.99714 1.08404 1.21439 1.00874 0.90578 0.91619 1.20799 0.94920 0.96204 1.08253 1.19965 1.00860 0.89841 0.83362 1.44391 1.65799 1.15587 1.08036 1.17882 0.84445 0.85098 0.86773 1.67953 1.25029 1.08474 1.33317 1.24426 0.87454 0.88058 0.92440 1.67505 1.26071 1.37210 0.97324 1.18900 0.92185 0.89698 0.87312 1.19577 1.20441 1.00991 0.94304 1.23388 1.00627 0.99575 0.88651 1.76951 1.13110 0.93946 1.21615 1.48952 1.47398 1.15145 1.00290 1.20086 0.95823 0.78875 0.93396 1.21099 0.90056 1.05697 1.40741 0.90409 1.24774 0.94738 0.98154 0.94799 1.69875 1.06339 1.34271 1.41968 0.86870 0.80157 0.83800 0.79092 1.19491 1.20537 1.18879 1.22410 0.92178 0.93697 0.91182 1.67389 1.40806 0.98747 1.19544 0.88544 0.92202 0.92137 0.83860 0.83666 0.90231 0.90264 0.75391 0.78724 0.79957 0.93059 0.93063 0.92151 0.82089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.38 101.05 1.05 1.29 16 2 O -0.31 -2.68 10.48 -18.73 -0.20 -2.87 16 3 C 0.32 2.91 7.49 -17.12 -0.13 2.78 16 4 C -0.19 -1.42 10.04 -39.28 -0.39 -1.82 16 5 C -0.02 -0.13 9.85 -39.31 -0.39 -0.52 16 6 C -0.20 -1.40 5.27 -104.47 -0.55 -1.95 16 7 C 0.18 1.45 5.88 -5.19 -0.03 1.42 16 8 N -0.70 -6.99 5.67 -61.26 -0.35 -7.34 16 9 C 0.51 7.34 7.55 -154.85 -1.17 6.17 16 10 N -0.62 -9.14 9.69 -13.62 -0.13 -9.27 16 11 C 0.37 5.89 12.24 -92.12 -1.13 4.76 16 12 N -0.56 -11.29 10.47 -13.97 -0.15 -11.44 16 13 C 0.37 7.83 8.04 -156.23 -1.26 6.58 16 14 C -0.34 -5.83 6.14 -106.82 -0.66 -6.49 16 15 C 0.07 1.19 11.87 -17.11 -0.20 0.99 16 16 N -0.24 -5.02 12.45 30.80 0.38 -4.64 16 17 N -0.33 -7.71 3.63 -61.65 -0.22 -7.93 16 18 C 0.24 5.92 5.26 -5.20 -0.03 5.89 16 19 C -0.54 -15.57 9.94 -34.44 -0.34 -15.91 16 20 H 0.08 2.53 8.06 -52.48 -0.42 2.11 16 21 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 22 N -0.89 -26.95 13.96 55.43 0.77 -26.18 16 23 Si 0.87 20.82 27.47 -169.99 -4.67 16.15 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 27 C 0.16 1.23 10.85 -17.56 -0.19 1.03 16 28 N -0.54 -4.92 9.22 -13.33 -0.12 -5.04 16 29 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.36 8.10 -51.93 -0.42 -0.06 16 31 H 0.06 0.37 8.10 -51.93 -0.42 -0.05 16 32 H 0.14 0.84 8.06 -52.48 -0.42 0.41 16 33 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 35 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 36 H 0.41 3.44 8.33 -40.82 -0.34 3.10 16 37 H 0.20 2.30 8.06 -52.49 -0.42 1.88 16 38 H 0.18 2.03 8.06 -52.49 -0.42 1.60 16 39 H 0.05 1.25 7.20 -51.93 -0.37 0.88 16 40 H 0.05 1.26 7.57 -51.93 -0.39 0.86 16 41 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 370.35 15.07 5.58 5.58 Total: -1.00 -35.53 370.35 -9.53 -45.06 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -4.92 Total: 1.51 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: -5.51 Total: 6.41 kcal Atomic # 7 Polarization: -72.03 SS G_CDS: 0.18 Total: -71.84 kcal Atomic # 8 Polarization: -2.68 SS G_CDS: -0.20 Total: -2.87 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.67 Total: 16.15 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.53 -9.53 -45.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200340.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.743 kcal (2) G-P(sol) polarization free energy of solvation -35.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds