Wall clock time and date at job start Tue Mar 31 2020 05:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35677 * 117.00122 * 2 1 4 4 C 1.38916 * 119.68642 * 180.02562 * 3 2 1 5 5 C 1.38381 * 119.11268 * 179.97438 * 4 3 2 6 6 C 1.38828 * 118.48382 * 0.27787 * 5 4 3 7 7 C 1.50704 * 120.35369 * 179.70098 * 6 5 4 8 8 N 1.46494 * 109.47256 * 89.99720 * 7 6 5 9 9 C 1.38105 * 120.00120 * 180.02562 * 8 7 6 10 10 N 1.32865 * 120.81163 * 359.71688 * 9 8 7 11 11 C 1.32127 * 121.19231 * 179.69277 * 10 9 8 12 12 N 1.31502 * 122.64487 * 0.64500 * 11 10 9 13 13 C 1.33195 * 120.68556 * 359.66039 * 12 11 10 14 14 C 1.40819 * 120.81445 * 179.97438 * 9 8 7 15 15 C 1.41164 * 134.69959 * 0.02562 * 14 9 8 16 16 N 1.30254 * 108.46551 * 179.97438 * 15 14 9 17 17 N 1.36315 * 134.61362 * 180.02562 * 13 12 11 18 18 C 1.46493 * 125.87680 * 359.97438 * 17 13 12 19 19 C 1.50694 * 109.47365 * 89.99940 * 18 17 13 20 20 H 1.08003 * 120.00145 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00309 * 179.97438 * 19 18 17 22 22 N 1.31519 * 120.00031 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00144 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47212 * 89.99474 * 23 21 19 25 25 H 1.48500 * 109.47304 * 209.99955 * 23 21 19 26 26 H 1.48503 * 109.46794 * 329.99566 * 23 21 19 27 27 C 1.38046 * 119.28869 * 359.44678 * 6 5 4 28 28 N 1.31965 * 120.83742 * 0.56348 * 27 6 5 29 29 H 1.09000 * 109.47051 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46871 * 300.00319 * 1 2 3 31 31 H 1.09000 * 109.47238 * 59.99755 * 1 2 3 32 32 H 1.08003 * 120.44069 * 359.97438 * 4 3 2 33 33 H 1.08002 * 120.75464 * 179.97438 * 5 4 3 34 34 H 1.08997 * 109.46730 * 209.99594 * 7 6 5 35 35 H 1.08995 * 109.46953 * 329.99534 * 7 6 5 36 36 H 0.97002 * 120.00344 * 359.97438 * 8 7 6 37 37 H 1.07999 * 118.67686 * 180.28244 * 11 10 9 38 38 H 1.07994 * 125.76611 * 359.95926 * 15 14 9 39 39 H 1.09002 * 109.47181 * 210.00445 * 18 17 13 40 40 H 1.09000 * 109.46901 * 330.00241 * 18 17 13 41 41 H 0.97004 * 119.99518 * 180.02562 * 22 21 19 42 42 H 1.08002 * 119.58163 * 180.28217 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2740 -0.0005 5 6 4.0485 2.5132 -0.0011 6 6 3.2505 3.6491 0.0049 7 6 3.8768 5.0198 0.0113 8 7 4.0792 5.4707 -1.3677 9 6 4.6440 6.7067 -1.6143 10 7 5.0045 7.5022 -0.6130 11 6 5.5509 8.6835 -0.8402 12 7 5.7589 9.1474 -2.0529 13 6 5.4262 8.4270 -3.1226 14 6 4.8468 7.1570 -2.9330 15 6 4.5980 6.6205 -4.2148 16 7 4.9907 7.4844 -5.1070 17 7 5.5098 8.6185 -4.4697 18 6 6.0503 9.8058 -5.1361 19 6 7.5279 9.6225 -5.3684 20 1 8.0156 8.7124 -5.0516 21 6 8.2572 10.6162 -5.9862 22 7 9.5467 10.4560 -6.1893 23 14 7.4138 12.1901 -6.5347 24 1 7.4584 13.1853 -5.4335 25 1 8.1128 12.7374 -7.7251 26 1 5.9996 11.8987 -6.8816 27 6 1.8771 3.5097 -0.0005 28 7 1.3186 2.3141 -0.0001 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 4.0228 0.3695 -0.0005 33 1 5.1254 2.5946 -0.0011 34 1 3.2185 5.7176 0.5288 35 1 4.8375 4.9779 0.5246 36 1 3.8173 4.9009 -2.1078 37 1 5.8327 9.2952 0.0041 38 1 4.1568 5.6565 -4.4208 39 1 5.5468 9.9465 -6.0926 40 1 5.8872 10.6811 -4.5075 41 1 10.0598 11.1554 -6.6237 42 1 1.2518 4.3902 -0.0006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097200340.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:05 Heat of formation + Delta-G solvation = 100.101376 kcal Electronic energy + Delta-G solvation = -27416.784707 eV Core-core repulsion = 23398.391402 eV Total energy + Delta-G solvation = -4018.393304 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.82221 -41.67181 -39.90272 -39.12092 -37.39414 -35.69272 -34.30811 -33.51868 -33.06369 -32.29778 -30.59720 -29.66541 -28.41904 -26.75000 -25.35311 -24.81171 -24.43982 -23.72648 -22.76221 -21.53816 -19.42292 -19.37002 -19.27337 -18.67651 -18.13327 -17.78902 -17.02411 -16.93348 -16.72023 -16.19949 -15.63189 -15.44450 -15.39370 -15.32896 -15.19140 -15.05077 -14.78991 -14.48020 -14.23367 -14.05599 -13.92057 -13.87784 -13.12710 -12.96020 -12.64689 -12.60261 -12.39428 -12.34003 -12.15356 -12.02977 -11.84953 -11.51620 -10.93002 -10.91270 -10.69899 -10.56498 -10.09664 -9.74619 -9.49586 -8.96789 -8.42748 -6.52835 -0.03132 0.03478 0.24215 0.53122 1.28347 1.34382 1.39541 1.46918 1.62863 2.06826 2.14281 2.25080 2.79334 2.88954 3.02397 3.26181 3.32944 3.39296 3.61873 3.72405 3.83996 3.96429 3.99982 4.07632 4.17913 4.42640 4.43480 4.45290 4.51828 4.61557 4.72028 4.75099 4.81249 4.82837 4.94645 5.12859 5.20689 5.29130 5.44238 5.50781 5.69515 5.86287 6.07061 6.19891 6.21528 6.46147 6.55366 6.75166 6.80937 7.09767 7.45825 8.74205 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.025204 B = 0.002024 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.680792 B =13833.199843 C =14190.620769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.322 6.322 3 C 0.307 3.693 4 C -0.197 4.197 5 C -0.015 4.015 6 C -0.194 4.194 7 C 0.187 3.813 8 N -0.680 5.680 9 C 0.520 3.480 10 N -0.611 5.611 11 C 0.378 3.622 12 N -0.605 5.605 13 C 0.339 3.661 14 C -0.345 4.345 15 C 0.102 3.898 16 N -0.289 5.289 17 N -0.366 5.366 18 C 0.251 3.749 19 C -0.547 4.547 20 H 0.020 0.980 21 C 0.020 3.980 22 N -0.937 5.937 23 Si 0.953 3.047 24 H -0.258 1.258 25 H -0.271 1.271 26 H -0.244 1.244 27 C 0.158 3.842 28 N -0.559 5.559 29 H 0.120 0.880 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.156 0.844 33 H 0.164 0.836 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.420 0.580 37 H 0.232 0.768 38 H 0.237 0.763 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.274 0.726 42 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.053 -18.476 16.579 31.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.229 6.229 3 C 0.128 3.872 4 C -0.217 4.217 5 C -0.041 4.041 6 C -0.196 4.196 7 C 0.064 3.936 8 N -0.312 5.312 9 C 0.266 3.734 10 N -0.342 5.342 11 C 0.086 3.914 12 N -0.333 5.333 13 C 0.092 3.908 14 C -0.363 4.363 15 C -0.093 4.093 16 N -0.104 5.104 17 N -0.153 5.153 18 C 0.131 3.869 19 C -0.586 4.586 20 H 0.039 0.961 21 C -0.180 4.180 22 N -0.575 5.575 23 Si 0.774 3.226 24 H -0.183 1.183 25 H -0.196 1.196 26 H -0.167 1.167 27 C 0.001 3.999 28 N -0.283 5.283 29 H 0.138 0.862 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.174 0.826 33 H 0.181 0.819 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.259 0.741 37 H 0.248 0.752 38 H 0.253 0.747 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -19.301 -17.843 15.969 30.756 hybrid contribution 0.708 0.033 -0.665 0.972 sum -18.593 -17.811 15.305 29.953 Atomic orbital electron populations 1.23035 0.75909 1.04560 1.02238 1.86232 1.24325 1.24753 1.87597 1.20254 0.90251 0.84889 0.91785 1.21325 0.91607 1.00635 1.08127 1.21670 1.01767 0.90112 0.90529 1.20649 0.94682 0.95735 1.08581 1.20058 1.01349 0.90370 0.81832 1.44518 1.63281 1.13729 1.09701 1.17964 0.83691 0.86190 0.85584 1.68108 1.25159 1.08194 1.32765 1.25210 0.85566 0.88527 0.92108 1.67520 1.28663 1.38781 0.98307 1.19355 0.92885 0.91584 0.86960 1.19736 1.20832 0.99883 0.95848 1.24237 0.97488 1.00061 0.87537 1.76892 1.15852 0.94536 1.23135 1.48723 1.49638 1.15653 1.01270 1.19643 0.93015 0.80472 0.93812 1.21203 0.92540 1.03830 1.40981 0.96132 1.25836 0.95347 1.02350 0.94432 1.70032 1.08336 1.36021 1.43132 0.85647 0.79818 0.78188 0.78958 1.18282 1.19620 1.16726 1.22692 0.92697 0.93753 0.90721 1.67394 1.41405 0.99235 1.20247 0.86213 0.92454 0.92568 0.82599 0.81886 0.89466 0.89836 0.74141 0.75198 0.74734 0.92669 0.92859 0.91694 0.80661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.38 113.37 1.18 1.58 16 2 O -0.32 -5.23 10.48 -89.95 -0.94 -6.17 16 3 C 0.31 5.05 7.49 84.79 0.63 5.68 16 4 C -0.20 -2.49 10.04 22.47 0.23 -2.27 16 5 C -0.02 -0.16 9.85 22.45 0.22 0.06 16 6 C -0.19 -2.12 5.27 -19.77 -0.10 -2.22 16 7 C 0.19 2.27 5.88 85.64 0.50 2.78 16 8 N -0.68 -11.07 5.67 -347.74 -1.97 -13.05 16 9 C 0.52 13.63 7.55 133.64 1.01 14.64 16 10 N -0.61 -16.62 9.69 -197.01 -1.91 -18.53 16 11 C 0.38 11.52 12.24 180.87 2.21 13.74 16 12 N -0.61 -24.73 10.47 -198.10 -2.07 -26.81 16 13 C 0.34 14.65 8.04 134.15 1.08 15.73 16 14 C -0.35 -11.58 6.14 -21.29 -0.13 -11.71 16 15 C 0.10 3.17 11.87 85.65 1.02 4.19 16 16 N -0.29 -12.19 12.45 -56.47 -0.70 -12.89 16 17 N -0.37 -17.52 3.63 -348.96 -1.27 -18.79 16 18 C 0.25 12.91 5.26 85.63 0.45 13.36 16 19 C -0.55 -33.31 9.94 25.60 0.25 -33.05 16 20 H 0.02 1.43 8.06 -2.91 -0.02 1.41 16 21 C 0.02 1.18 5.47 84.65 0.46 1.64 16 22 N -0.94 -59.05 13.96 21.45 0.30 -58.75 16 23 Si 0.95 43.44 27.47 68.60 1.88 45.32 16 24 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 25 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 26 H -0.24 -10.24 6.54 99.48 0.65 -9.59 16 27 C 0.16 1.99 10.85 84.63 0.92 2.91 16 28 N -0.56 -9.21 9.22 -308.94 -2.85 -12.06 16 29 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.64 8.10 -2.39 -0.02 0.62 16 31 H 0.06 0.65 8.10 -2.39 -0.02 0.63 16 32 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 33 H 0.16 1.09 8.06 -2.91 -0.02 1.06 16 34 H 0.09 1.04 8.09 -2.39 -0.02 1.02 16 35 H 0.08 1.06 8.09 -2.39 -0.02 1.04 16 36 H 0.42 5.34 8.33 -92.71 -0.77 4.57 16 37 H 0.23 4.93 8.06 -2.91 -0.02 4.91 16 38 H 0.24 4.33 8.06 -2.91 -0.02 4.30 16 39 H 0.06 2.73 7.20 -2.39 -0.02 2.72 16 40 H 0.05 2.67 7.57 -2.39 -0.02 2.65 16 41 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 42 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -82.97 370.35 0.65 -82.32 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 0.25 Total: 12.35 kcal Atomic # 6 Polarization: 17.12 SS G_CDS: 9.93 Total: 27.05 kcal Atomic # 7 Polarization: -150.40 SS G_CDS: -10.47 Total: -160.87 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: -0.94 Total: -6.17 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.88 Total: 45.32 kcal Total: -82.97 0.65 -82.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200340.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.424 kcal (2) G-P(sol) polarization free energy of solvation -82.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds