Wall clock time and date at job start Tue Mar 31 2020 06:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.30501 * 119.99763 * 2 1 4 4 S 1.77214 * 126.68607 * 185.64600 * 3 2 1 5 5 C 1.77402 * 94.74260 * 180.02562 * 4 3 2 6 6 C 1.36238 * 127.70873 * 179.97438 * 5 4 3 7 7 C 1.46151 * 120.00296 * 172.69950 * 6 5 4 8 8 C 1.37791 * 126.82354 * 318.82469 * 7 6 5 9 9 N 1.35893 * 109.47454 * 179.97438 * 8 7 6 10 10 C 1.36957 * 124.77579 * 179.50034 * 9 8 7 11 11 H 1.07999 * 119.99908 * 157.92625 * 10 9 8 12 12 C 1.38907 * 120.00365 * 337.93080 * 10 9 8 13 13 N 1.31383 * 119.99826 * 356.71851 * 12 10 9 14 14 Si 1.86798 * 120.00345 * 176.72256 * 12 10 9 15 15 H 1.48499 * 109.47408 * 89.99544 * 14 12 10 16 16 H 1.48498 * 109.47127 * 209.99784 * 14 12 10 17 17 H 1.48504 * 109.47148 * 329.99656 * 14 12 10 18 18 C 1.38415 * 110.44552 * 359.47200 * 9 8 7 19 19 C 1.39015 * 132.95329 * 180.02562 * 18 9 8 20 20 C 1.37928 * 119.96036 * 179.69937 * 19 18 9 21 21 C 1.38642 * 120.59823 * 0.29822 * 20 19 18 22 22 C 1.37941 * 120.26072 * 359.96098 * 21 20 19 23 23 C 1.39131 * 119.68744 * 0.02562 * 22 21 20 24 24 C 1.46237 * 104.58499 * 359.66054 * 5 4 3 25 25 O 1.21779 * 122.29499 * 180.23983 * 24 5 4 26 26 N 1.32242 * 115.41181 * 0.26001 * 24 5 4 27 27 C 1.46498 * 120.68615 * 180.02562 * 26 24 5 28 28 H 1.08995 * 109.46923 * 295.91711 * 1 2 3 29 29 H 1.09003 * 109.47043 * 55.91499 * 1 2 3 30 30 H 1.08999 * 109.46800 * 175.91506 * 1 2 3 31 31 H 1.08003 * 119.99642 * 352.69080 * 6 5 4 32 32 H 1.08004 * 125.26060 * 359.42971 * 8 7 6 33 33 H 0.97003 * 120.00468 * 180.02562 * 13 12 10 34 34 H 1.08001 * 120.02138 * 359.97343 * 19 18 9 35 35 H 1.08000 * 119.70287 * 180.28021 * 20 19 18 36 36 H 1.07995 * 119.87222 * 179.97438 * 21 20 19 37 37 H 1.08000 * 120.15799 * 180.02562 * 22 21 20 38 38 H 1.09005 * 109.46958 * 358.54277 * 27 26 24 39 39 H 1.08999 * 109.46949 * 118.54071 * 27 26 24 40 40 H 1.08999 * 109.47305 * 238.54106 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1175 1.1302 0.0000 4 16 3.8716 1.3400 -0.1398 5 6 3.8154 3.1107 -0.0467 6 6 4.8624 3.9812 -0.0925 7 6 4.6142 5.4199 -0.1612 8 6 3.6532 6.0571 -0.9156 9 7 3.7341 7.3984 -0.7132 10 6 2.9311 8.3293 -1.3169 11 1 2.8007 9.3026 -0.8675 12 6 2.2843 8.0215 -2.5070 13 7 2.4933 6.8614 -3.0873 14 14 1.1176 9.2571 -3.2827 15 1 1.8733 10.1372 -4.2097 16 1 0.0614 8.5349 -4.0363 17 1 0.4905 10.0814 -2.2184 18 6 4.7418 7.6913 0.1893 19 6 5.2196 8.8833 0.7217 20 6 6.2585 8.8650 1.6288 21 6 6.8388 7.6660 2.0131 22 6 6.3816 6.4737 1.4914 23 6 5.3340 6.4789 0.5758 24 6 2.3937 3.4277 0.0825 25 8 1.9875 4.5726 0.1679 26 7 1.5793 2.3859 0.1007 27 6 0.1314 2.5709 0.2254 28 1 -0.3633 0.4491 0.9243 29 1 -0.3633 0.5759 -0.8511 30 1 -0.3633 -1.0251 -0.0732 31 1 5.8758 3.6082 -0.0779 32 1 2.9507 5.5670 -1.5734 33 1 2.0419 6.6466 -3.9186 34 1 4.7747 9.8227 0.4286 35 1 6.6234 9.7932 2.0432 36 1 7.6519 7.6654 2.7238 37 1 6.8346 5.5406 1.7922 38 1 -0.0925 3.6337 0.3178 39 1 -0.3634 2.1709 -0.6596 40 1 -0.2270 2.0457 1.1107 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103600283.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:50 Heat of formation + Delta-G solvation = 94.633728 kcal Electronic energy + Delta-G solvation = -26785.347228 eV Core-core repulsion = 23079.458286 eV Total energy + Delta-G solvation = -3705.888942 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.094 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.72534 -40.20953 -37.19021 -36.34014 -34.00586 -33.70232 -32.69798 -30.75306 -29.62515 -28.83734 -27.68734 -26.45130 -24.92557 -23.00137 -22.55822 -21.77990 -20.69580 -20.13432 -18.50716 -17.81694 -17.56838 -16.33836 -16.13712 -15.66503 -15.34003 -14.99855 -14.80911 -14.48060 -14.47073 -14.01408 -13.70097 -13.64437 -13.19832 -13.05401 -13.03374 -12.71178 -12.28567 -12.03042 -11.86033 -11.80819 -11.53428 -11.41707 -11.18370 -11.03856 -10.93203 -10.76855 -10.53701 -10.34080 -9.99843 -9.89352 -9.38526 -9.18829 -8.76729 -8.59081 -7.57017 -7.34291 -6.94372 -6.47623 -4.53580 1.08038 1.22845 1.94950 2.10662 2.18240 2.54131 2.91179 2.93280 2.98395 3.01246 3.45820 3.66484 3.96031 4.56382 4.57636 4.60292 4.78203 4.87064 5.08518 5.10675 5.45699 5.49493 5.54580 5.56895 5.64153 5.67730 5.79422 5.81774 5.92209 6.09583 6.22448 6.30088 6.50610 6.70850 6.74488 6.86752 6.96524 7.01298 7.18012 7.26800 7.36673 7.44124 7.58452 7.75358 7.87032 8.25503 8.29605 8.73472 9.13897 10.08378 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.009978 B = 0.004587 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2805.505198 B = 6103.009484 C = 8265.714875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.537 5.537 3 C 0.367 3.633 4 S 0.056 5.944 5 C -0.318 4.318 6 C 0.161 3.839 7 C -0.291 4.291 8 C 0.188 3.812 9 N -0.274 5.274 10 C -0.336 4.336 11 H 0.111 0.889 12 C 0.042 3.958 13 N -0.845 5.845 14 Si 0.946 3.054 15 H -0.269 1.269 16 H -0.275 1.275 17 H -0.263 1.263 18 C 0.047 3.953 19 C -0.098 4.098 20 C -0.143 4.143 21 C -0.150 4.150 22 C -0.099 4.099 23 C -0.065 4.065 24 C 0.550 3.450 25 O -0.476 6.476 26 N -0.582 5.582 27 C 0.061 3.939 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.129 0.871 32 H 0.189 0.811 33 H 0.284 0.716 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.426 -5.931 3.801 7.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 N -0.266 5.266 3 C -0.017 4.017 4 S 0.297 5.703 5 C -0.433 4.433 6 C 0.134 3.866 7 C -0.298 4.298 8 C 0.042 3.958 9 N 0.066 4.934 10 C -0.464 4.464 11 H 0.128 0.872 12 C -0.167 4.167 13 N -0.477 5.477 14 Si 0.770 3.230 15 H -0.194 1.194 16 H -0.199 1.199 17 H -0.187 1.187 18 C -0.059 4.059 19 C -0.118 4.118 20 C -0.163 4.163 21 C -0.169 4.169 22 C -0.118 4.118 23 C -0.070 4.070 24 C 0.339 3.661 25 O -0.349 6.349 26 N -0.314 5.314 27 C -0.083 4.083 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.147 0.853 32 H 0.206 0.794 33 H 0.094 0.906 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.115 0.885 39 H 0.092 0.908 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.046 -6.858 3.389 7.649 hybrid contribution -2.199 1.967 -0.307 2.967 sum -2.153 -4.890 3.082 6.168 Atomic orbital electron populations 1.22749 0.87554 1.02911 1.00841 1.72800 1.09197 1.18590 1.26008 1.24935 0.98863 0.83401 0.94502 1.84883 0.95492 1.02153 1.87757 1.23101 0.95976 0.94991 1.29268 1.20843 0.95028 0.90181 0.80560 1.18677 1.07695 0.89805 1.13668 1.23075 0.94432 0.81706 0.96598 1.40137 1.20503 1.05660 1.27097 1.19933 1.23873 0.96908 1.05677 0.87178 1.25552 0.97797 0.97784 0.95565 1.69766 1.38894 1.21032 1.17962 0.85612 0.78952 0.79221 0.79247 1.19436 1.19947 1.18714 1.18486 0.93721 0.94812 0.98834 1.20008 0.97976 0.95287 0.98537 1.20491 0.98306 0.97386 1.00107 1.20634 1.01463 0.92471 1.02346 1.20224 0.96555 0.97303 0.97720 1.18825 0.96976 0.91886 0.99263 1.17604 0.86747 0.84662 0.77073 1.90976 1.78702 1.18631 1.46568 1.45835 1.09305 1.06548 1.69753 1.22409 0.78502 1.05400 1.01940 0.92272 0.92303 0.90122 0.85307 0.79430 0.90556 0.87138 0.87138 0.87319 0.87280 0.88467 0.90767 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.49 59.85 0.57 0.70 16 2 N -0.54 -8.16 11.04 -67.59 -0.75 -8.91 16 3 C 0.37 5.94 8.28 -88.57 -0.73 5.20 16 4 S 0.06 0.87 23.16 -107.50 -2.49 -1.62 16 5 C -0.32 -5.82 6.46 -37.09 -0.24 -6.06 16 6 C 0.16 2.97 10.22 -37.13 -0.38 2.59 16 7 C -0.29 -6.46 5.58 -103.00 -0.58 -7.04 16 8 C 0.19 4.68 7.27 -15.92 -0.12 4.56 16 9 N -0.27 -6.97 2.89 -59.16 -0.17 -7.14 16 10 C -0.34 -8.44 9.89 -15.01 -0.15 -8.59 16 11 H 0.11 2.60 7.83 -52.49 -0.41 2.19 16 12 C 0.04 1.02 5.42 -17.50 -0.09 0.92 16 13 N -0.85 -21.15 10.57 55.49 0.59 -20.56 16 14 Si 0.95 18.44 29.55 -169.99 -5.02 13.41 16 15 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 16 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 17 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 18 C 0.05 1.10 6.72 -83.80 -0.56 0.53 16 19 C -0.10 -2.00 9.92 -39.41 -0.39 -2.39 16 20 C -0.14 -2.52 10.02 -39.55 -0.40 -2.91 16 21 C -0.15 -2.55 10.04 -39.54 -0.40 -2.95 16 22 C -0.10 -1.85 10.09 -39.36 -0.40 -2.25 16 23 C -0.06 -1.43 6.35 -104.88 -0.67 -2.09 16 24 C 0.55 10.92 7.39 -14.16 -0.10 10.82 16 25 O -0.48 -11.03 12.47 5.12 0.06 -10.97 16 26 N -0.58 -9.85 2.96 -125.61 -0.37 -10.22 16 27 C 0.06 0.84 8.91 59.85 0.53 1.37 16 28 H 0.06 0.62 5.84 -51.93 -0.30 0.32 16 29 H 0.06 0.65 5.94 -51.93 -0.31 0.34 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.13 1.91 8.06 -52.48 -0.42 1.49 16 32 H 0.19 4.97 5.17 -52.48 -0.27 4.70 16 33 H 0.28 6.58 8.31 -40.82 -0.34 6.24 16 34 H 0.11 2.10 8.06 -52.49 -0.42 1.68 16 35 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.10 1.46 7.03 -51.93 -0.37 1.10 16 39 H 0.07 0.88 5.87 -51.93 -0.30 0.58 16 40 H 0.07 0.83 6.00 -51.93 -0.31 0.52 16 LS Contribution 346.45 15.07 5.22 5.22 Total: -1.00 -28.57 346.45 -10.98 -39.55 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -3.95 Total: 8.82 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -4.10 Total: -7.58 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: -0.70 Total: -46.83 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.06 Total: -10.97 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.02 Total: 13.41 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.49 Total: -1.62 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.57 -10.98 -39.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103600283.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.181 kcal (2) G-P(sol) polarization free energy of solvation -28.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds