Wall clock time and date at job start Tue Mar 31 2020 05:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86796 * 120.00189 * 2 1 4 4 H 1.48503 * 109.47613 * 275.20155 * 3 2 1 5 5 H 1.48500 * 109.47059 * 35.20124 * 3 2 1 6 6 H 1.48501 * 109.47327 * 155.20159 * 3 2 1 7 7 C 1.38812 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00064 * 336.12224 * 7 2 1 9 9 N 1.36936 * 120.00297 * 156.12093 * 7 2 1 10 10 C 1.46505 * 119.99998 * 323.01267 * 9 7 2 11 11 C 1.50696 * 109.46921 * 262.86228 * 10 9 7 12 12 N 1.34776 * 119.99701 * 179.97438 * 11 10 9 13 13 O 1.21276 * 120.00514 * 0.02562 * 11 10 9 14 14 C 1.46502 * 119.99909 * 143.01435 * 9 7 2 15 15 C 1.50703 * 109.46707 * 269.99641 * 14 9 7 16 16 C 1.38272 * 119.93957 * 90.00649 * 15 14 9 17 17 C 1.38143 * 120.05137 * 179.97438 * 16 15 14 18 18 C 1.38728 * 119.94940 * 359.97438 * 17 16 15 19 19 O 1.35900 * 120.05843 * 180.02562 * 18 17 16 20 20 C 1.42909 * 116.99967 * 179.97438 * 19 18 17 21 21 C 1.50696 * 109.46735 * 180.02562 * 20 19 18 22 22 C 1.38240 * 119.99873 * 269.72531 * 21 20 19 23 23 C 1.38240 * 119.99963 * 179.77113 * 22 21 20 24 24 C 1.38238 * 119.99668 * 0.48540 * 23 22 21 25 25 C 1.38228 * 120.00153 * 359.79150 * 24 23 22 26 26 C 1.38237 * 120.00165 * 90.00604 * 21 20 19 27 27 C 1.38734 * 119.88425 * 0.27073 * 18 17 16 28 28 C 1.38141 * 119.94563 * 359.47855 * 27 18 17 29 29 H 0.97004 * 120.00089 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.46811 * 22.86748 * 10 9 7 31 31 H 1.08997 * 109.46918 * 142.86148 * 10 9 7 32 32 H 0.97004 * 120.00066 * 0.02562 * 12 11 10 33 33 H 0.96997 * 119.99980 * 180.02562 * 12 11 10 34 34 H 1.08998 * 109.47046 * 150.00495 * 14 9 7 35 35 H 1.08990 * 109.47422 * 29.99625 * 14 9 7 36 36 H 1.07995 * 119.97297 * 0.02562 * 16 15 14 37 37 H 1.08003 * 120.02505 * 179.97438 * 17 16 15 38 38 H 1.08998 * 109.47206 * 300.00162 * 20 19 18 39 39 H 1.08999 * 109.46893 * 60.00054 * 20 19 18 40 40 H 1.07996 * 119.99909 * 0.02562 * 22 21 20 41 41 H 1.08003 * 119.99933 * 180.25592 * 23 22 21 42 42 H 1.07996 * 119.99384 * 179.76855 * 24 23 22 43 43 H 1.07996 * 120.00362 * 179.97438 * 25 24 23 44 44 H 1.07995 * 120.00024 * 359.97438 * 26 21 20 45 45 H 1.08009 * 120.02549 * 179.72444 * 27 18 17 46 46 H 1.08005 * 119.97190 * 180.22821 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3878 2.1099 -1.3943 5 1 1.5069 2.6184 0.8071 6 1 3.5984 1.4109 0.5872 7 6 2.0102 -1.2021 -0.0005 8 1 1.5395 -2.0976 0.3777 9 7 3.2916 -1.2527 -0.4806 10 6 3.6720 -0.4421 -1.6402 11 6 3.6033 -1.2857 -2.8870 12 7 3.9124 -0.7468 -4.0831 13 8 3.2691 -2.4493 -2.8144 14 6 4.2822 -2.1175 0.1653 15 6 4.9881 -1.3481 1.2520 16 6 4.4845 -1.3530 2.5397 17 6 5.1300 -0.6489 3.5377 18 6 6.2847 0.0630 3.2472 19 8 6.9218 0.7560 4.2274 20 6 8.1053 1.4656 3.8560 21 6 8.6696 2.1682 5.0638 22 6 8.2735 3.4589 5.3605 23 6 8.7875 4.1017 6.4712 24 6 9.7053 3.4573 7.2795 25 6 10.1057 2.1687 6.9797 26 6 9.5877 1.5240 5.8720 27 6 6.7851 0.0705 1.9533 28 6 6.1388 -0.6394 0.9600 29 1 -0.4850 0.8401 -0.0004 30 1 2.9880 0.4013 -1.7339 31 1 4.6887 -0.0724 -1.5072 32 1 4.1793 0.1839 -4.1413 33 1 3.8678 -1.2897 -4.8857 34 1 5.0097 -2.4520 -0.5742 35 1 3.7813 -2.9826 0.5995 36 1 3.5862 -1.9083 2.7656 37 1 4.7360 -0.6527 4.5433 38 1 8.8428 0.7636 3.4669 39 1 7.8626 2.2003 3.0883 40 1 7.5593 3.9637 4.7268 41 1 8.4749 5.1087 6.7052 42 1 10.1096 3.9609 8.1451 43 1 10.8229 1.6654 7.6110 44 1 9.9003 0.5171 5.6379 45 1 7.6815 0.6276 1.7237 46 1 6.5301 -0.6369 -0.0467 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103614941.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:41 Heat of formation + Delta-G solvation = 5.588811 kcal Electronic energy + Delta-G solvation = -28393.145762 eV Core-core repulsion = 24441.901678 eV Total energy + Delta-G solvation = -3951.244084 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.12488 -39.23796 -38.69540 -37.37473 -35.20813 -32.98673 -32.53146 -31.76471 -31.19782 -30.59483 -30.10487 -27.22918 -26.70070 -25.34257 -22.88055 -22.61727 -22.22647 -21.25549 -20.62972 -19.79059 -17.99688 -17.43099 -17.18353 -16.27894 -16.15777 -16.07604 -15.90830 -15.33415 -15.03760 -14.84486 -14.66569 -14.21917 -13.95203 -13.75304 -13.68907 -13.51549 -13.20053 -13.03289 -12.91863 -12.58034 -12.48746 -12.28237 -12.17819 -11.50166 -11.33695 -11.29519 -11.21203 -10.77449 -10.64571 -10.53409 -10.35782 -10.20302 -9.67333 -9.26776 -9.21095 -9.14614 -9.10068 -8.58549 -8.54298 -7.68703 -6.95293 -6.04902 -3.43915 0.93823 1.11290 1.79757 1.87485 3.17581 3.19041 3.37165 3.47794 3.51241 3.76902 4.07192 4.25572 4.45704 4.50053 4.51991 4.71041 4.82294 4.96144 5.03696 5.06194 5.16266 5.22767 5.27651 5.33100 5.35067 5.59740 5.65599 5.74292 5.74893 5.80447 5.88149 5.97494 6.08269 6.14010 6.16680 6.20261 6.21564 6.29257 6.48766 6.65221 6.67837 6.69682 6.84226 7.20672 7.25721 7.31147 7.69353 7.81971 8.02067 8.34825 8.84400 9.03373 9.63258 10.00813 11.10307 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016031 B = 0.002557 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.142478 B =10949.297499 C =11419.070551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.037 3.963 3 Si 0.860 3.140 4 H -0.288 1.288 5 H -0.298 1.298 6 H -0.258 1.258 7 C -0.258 4.258 8 H 0.083 0.917 9 N -0.569 5.569 10 C 0.116 3.884 11 C 0.487 3.513 12 N -0.873 5.873 13 O -0.528 6.528 14 C 0.189 3.811 15 C -0.114 4.114 16 C -0.057 4.057 17 C -0.151 4.151 18 C 0.108 3.892 19 O -0.314 6.314 20 C 0.102 3.898 21 C -0.091 4.091 22 C -0.096 4.096 23 C -0.124 4.124 24 C -0.114 4.114 25 C -0.125 4.125 26 C -0.096 4.096 27 C -0.212 4.212 28 C -0.082 4.082 29 H 0.264 0.736 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.393 0.607 33 H 0.387 0.613 34 H 0.050 0.950 35 H 0.066 0.934 36 H 0.132 0.868 37 H 0.123 0.877 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.124 0.876 45 H 0.117 0.883 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.805 6.713 7.100 22.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.164 4.164 3 Si 0.689 3.311 4 H -0.217 1.217 5 H -0.225 1.225 6 H -0.182 1.182 7 C -0.387 4.387 8 H 0.101 0.899 9 N -0.287 5.287 10 C -0.015 4.015 11 C 0.271 3.729 12 N -0.438 5.438 13 O -0.402 6.402 14 C 0.064 3.936 15 C -0.117 4.117 16 C -0.075 4.075 17 C -0.170 4.170 18 C 0.063 3.937 19 O -0.228 6.228 20 C 0.027 3.973 21 C -0.091 4.091 22 C -0.114 4.114 23 C -0.142 4.142 24 C -0.132 4.132 25 C -0.143 4.143 26 C -0.114 4.114 27 C -0.231 4.231 28 C -0.100 4.100 29 H 0.074 0.926 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.220 0.780 33 H 0.217 0.783 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.150 0.850 37 H 0.141 0.859 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.135 0.865 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 20.310 6.040 7.604 22.513 hybrid contribution 0.533 1.629 -0.681 1.844 sum 20.843 7.669 6.924 23.263 Atomic orbital electron populations 1.69893 1.05979 1.26744 1.50540 1.25473 0.95059 0.97564 0.98306 0.87169 0.81787 0.85168 0.76949 1.21656 1.22549 1.18204 1.18793 0.86721 0.94561 1.38630 0.89942 1.43712 1.08350 1.50633 1.26034 1.21310 1.00104 0.94441 0.85620 1.22739 0.75044 0.89344 0.85815 1.44214 1.74117 1.15797 1.09703 1.90646 1.45179 1.17757 1.86575 1.19903 0.90586 0.92205 0.90942 1.20934 0.94556 1.00242 0.95972 1.20937 0.97984 0.96875 0.91750 1.20406 0.95143 1.00944 1.00500 1.18887 0.93431 0.94155 0.87205 1.86102 1.39006 1.62382 1.35335 1.21487 0.86332 0.94889 0.94575 1.19573 0.97920 0.94563 0.97085 1.21142 0.98623 0.94434 0.97202 1.21173 0.97635 1.00222 0.95158 1.21221 0.97438 0.95146 0.99393 1.21154 1.00461 0.95255 0.97407 1.21105 0.96424 0.99554 0.94353 1.21055 1.02976 1.06111 0.92972 1.20761 0.95150 0.96150 0.97981 0.92625 0.89452 0.91685 0.77986 0.78320 0.93163 0.91575 0.85043 0.85897 0.91356 0.91378 0.85728 0.85781 0.85959 0.85817 0.85776 0.86467 0.86707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.90 13.97 55.49 0.78 -26.13 16 2 C 0.04 1.04 5.23 -17.43 -0.09 0.95 16 3 Si 0.86 21.17 25.15 -169.99 -4.27 16.89 16 4 H -0.29 -6.68 6.66 56.52 0.38 -6.31 16 5 H -0.30 -7.60 7.11 56.52 0.40 -7.19 16 6 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.26 -7.09 9.90 -15.06 -0.15 -7.24 16 8 H 0.08 2.48 8.06 -52.48 -0.42 2.05 16 9 N -0.57 -13.23 1.58 -175.98 -0.28 -13.51 16 10 C 0.12 2.40 4.76 -5.19 -0.02 2.37 16 11 C 0.49 9.76 8.15 -10.99 -0.09 9.67 16 12 N -0.87 -12.52 8.87 31.22 0.28 -12.24 16 13 O -0.53 -12.79 17.19 5.56 0.10 -12.69 16 14 C 0.19 3.78 5.71 -5.19 -0.03 3.75 16 15 C -0.11 -2.11 5.46 -104.60 -0.57 -2.68 16 16 C -0.06 -1.04 9.69 -39.60 -0.38 -1.42 16 17 C -0.15 -2.59 9.99 -39.44 -0.39 -2.99 16 18 C 0.11 1.76 6.69 -39.22 -0.26 1.50 16 19 O -0.31 -4.73 10.12 -19.43 -0.20 -4.93 16 20 C 0.10 1.18 4.87 36.00 0.18 1.35 16 21 C -0.09 -0.99 5.51 -104.62 -0.58 -1.57 16 22 C -0.10 -0.98 9.70 -39.58 -0.38 -1.36 16 23 C -0.12 -1.09 10.05 -39.58 -0.40 -1.48 16 24 C -0.11 -0.92 10.05 -39.58 -0.40 -1.32 16 25 C -0.12 -1.05 10.05 -39.59 -0.40 -1.44 16 26 C -0.10 -0.93 9.70 -39.58 -0.38 -1.31 16 27 C -0.21 -3.26 9.04 -39.43 -0.36 -3.62 16 28 C -0.08 -1.34 9.69 -39.61 -0.38 -1.73 16 29 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.09 1.95 3.69 -51.93 -0.19 1.76 16 31 H 0.07 1.15 8.12 -51.93 -0.42 0.72 16 32 H 0.39 4.38 8.83 -40.82 -0.36 4.02 16 33 H 0.39 4.90 8.93 -40.82 -0.36 4.53 16 34 H 0.05 0.93 8.01 -51.93 -0.42 0.52 16 35 H 0.07 1.34 7.98 -51.93 -0.41 0.92 16 36 H 0.13 2.37 8.06 -52.49 -0.42 1.95 16 37 H 0.12 1.92 8.06 -52.48 -0.42 1.50 16 38 H 0.07 0.69 7.62 -51.93 -0.40 0.29 16 39 H 0.07 0.74 7.59 -51.93 -0.39 0.34 16 40 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 42 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 43 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 44 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 45 H 0.12 1.47 6.30 -52.48 -0.33 1.14 16 46 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 389.88 15.07 5.88 5.88 Total: -1.00 -35.00 389.88 -9.08 -44.08 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -6.26 Total: 11.20 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -5.10 Total: -8.56 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: 0.77 Total: -51.87 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.10 Total: -17.62 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.27 Total: 16.89 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.00 -9.08 -44.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103614941.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.670 kcal (2) G-P(sol) polarization free energy of solvation -35.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds