Wall clock time and date at job start Tue Mar 31 2020 05:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38847 * 120.74912 * 2 1 4 4 C 1.38064 * 119.30972 * 180.02562 * 3 2 1 5 5 C 1.50696 * 119.57287 * 180.02562 * 4 3 2 6 6 N 1.31948 * 120.85058 * 359.72508 * 4 3 2 7 7 C 1.32351 * 121.63310 * 0.55963 * 6 4 3 8 8 N 1.39385 * 119.69819 * 179.71030 * 7 6 4 9 9 C 1.34779 * 119.99969 * 4.86620 * 8 7 6 10 10 O 1.21579 * 120.00127 * 354.92005 * 9 8 7 11 11 N 1.34773 * 120.00327 * 174.91422 * 9 8 7 12 12 C 1.46500 * 119.99619 * 0.02562 * 11 9 8 13 13 C 1.50701 * 109.47218 * 269.99734 * 12 11 9 14 14 H 1.07997 * 119.99924 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00194 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99776 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00223 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47040 * 90.00088 * 17 15 13 19 19 H 1.48504 * 109.47250 * 209.99963 * 17 15 13 20 20 H 1.48495 * 109.47313 * 330.00080 * 17 15 13 21 21 C 1.46494 * 120.00459 * 180.02562 * 11 9 8 22 22 C 1.50695 * 109.47167 * 270.00144 * 21 11 9 23 23 C 1.38239 * 119.61913 * 94.99712 * 22 21 11 24 24 C 1.38623 * 119.16217 * 179.97438 * 23 22 21 25 25 C 1.38673 * 118.41944 * 0.02562 * 24 23 22 26 26 C 1.38181 * 119.16564 * 359.97438 * 25 24 23 27 27 N 1.31850 * 119.62319 * 274.72334 * 22 21 11 28 28 C 1.38353 * 120.75510 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47521 * 269.97502 * 1 2 3 30 30 H 1.09001 * 109.47348 * 29.97911 * 1 2 3 31 31 H 1.09002 * 109.46826 * 149.97664 * 1 2 3 32 32 H 1.08001 * 120.34641 * 0.02562 * 3 2 1 33 33 H 1.08998 * 109.47638 * 90.00282 * 5 4 3 34 34 H 1.09008 * 109.47435 * 209.99953 * 5 4 3 35 35 H 1.09001 * 109.47542 * 329.99820 * 5 4 3 36 36 H 0.96999 * 120.00506 * 184.87193 * 8 7 6 37 37 H 1.09002 * 109.47622 * 30.00138 * 12 11 9 38 38 H 1.09007 * 109.47131 * 149.99996 * 12 11 9 39 39 H 0.97000 * 120.00190 * 179.97438 * 16 15 13 40 40 H 1.08998 * 109.47756 * 149.99895 * 21 11 9 41 41 H 1.09004 * 109.47273 * 29.99958 * 21 11 9 42 42 H 1.07998 * 120.41502 * 359.95807 * 23 22 21 43 43 H 1.08000 * 120.79086 * 180.02562 * 24 23 22 44 44 H 1.08004 * 120.41823 * 180.02562 * 25 24 23 45 45 H 1.07999 * 119.61882 * 180.02562 * 26 25 24 46 46 H 1.07999 * 120.44443 * 359.96171 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1933 0.0000 4 6 3.5971 1.1586 -0.0005 5 6 4.3735 2.4501 0.0000 6 7 4.2451 0.0092 0.0044 7 6 3.6044 -1.1489 -0.0010 8 7 4.3295 -2.3393 -0.0016 9 6 5.6729 -2.3100 0.1023 10 8 6.2595 -1.2451 0.1035 11 7 6.3662 -3.4612 0.2050 12 6 5.6594 -4.7445 0.2031 13 6 5.3058 -5.1253 1.6177 14 1 5.5797 -4.4762 2.4362 15 6 4.6325 -6.3024 1.8670 16 7 4.2985 -7.0927 0.8702 17 14 4.1936 -6.7741 3.6203 18 1 2.8556 -6.2269 3.9599 19 1 4.1690 -8.2539 3.7434 20 1 5.2072 -6.2168 4.5514 21 6 7.8264 -3.4295 0.3185 22 6 8.4383 -3.4778 -1.0577 23 6 8.7894 -2.3002 -1.6910 24 6 9.3522 -2.3557 -2.9567 25 6 9.5412 -3.5990 -3.5410 26 6 9.1655 -4.7333 -2.8470 27 7 8.6378 -4.6429 -1.6418 28 6 2.2145 -1.1890 -0.0005 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6949 2.1387 0.0004 33 1 4.5612 2.7609 1.0278 34 1 5.3234 2.3034 -0.5143 35 1 3.7978 3.2205 -0.5131 36 1 3.8673 -3.1888 -0.0769 37 1 4.7479 -4.6565 -0.3881 38 1 6.3008 -5.5120 -0.2302 39 1 3.8252 -7.9210 1.0455 40 1 8.1647 -4.2891 0.8969 41 1 8.1319 -2.5111 0.8200 42 1 8.6271 -1.3490 -1.2060 43 1 9.6367 -1.4521 -3.4753 44 1 9.9773 -3.6798 -4.5258 45 1 9.3098 -5.7054 -3.2950 46 1 1.6942 -2.1354 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125624082.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:51 Heat of formation + Delta-G solvation = 55.731985 kcal Electronic energy + Delta-G solvation = -29272.674752 eV Core-core repulsion = 25355.897790 eV Total energy + Delta-G solvation = -3916.776962 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.53186 -39.91441 -38.88101 -35.33586 -34.55824 -33.88324 -32.79046 -32.14907 -31.61261 -30.57634 -27.84975 -27.56915 -27.17412 -25.96210 -23.35099 -23.01348 -22.58029 -21.69642 -21.14830 -19.11787 -17.66998 -16.93321 -16.55757 -16.31100 -15.93412 -15.72504 -15.51391 -15.25353 -15.06449 -14.72697 -14.43010 -14.05384 -13.59307 -13.43674 -13.26770 -13.05356 -12.94950 -12.79858 -12.64431 -12.42331 -12.38858 -12.09125 -12.03516 -11.67010 -11.51817 -11.48237 -11.25641 -10.93439 -10.76510 -10.21866 -10.09430 -9.80404 -9.65668 -9.60876 -9.16346 -9.12577 -8.81055 -8.65059 -8.50938 -7.94179 -7.59445 -6.18154 -4.26202 1.33551 1.42386 1.55904 1.58715 3.15198 3.22855 3.30356 3.34964 3.73731 4.04936 4.26136 4.33841 4.47365 4.66115 4.75837 4.80107 5.01908 5.08899 5.14436 5.18709 5.30058 5.30322 5.37624 5.43597 5.48534 5.52225 5.71410 5.75293 5.79955 5.83357 5.85037 5.88129 6.06236 6.13649 6.24763 6.27523 6.39697 6.44621 6.50323 6.70643 6.72020 6.96740 7.13465 7.17983 7.35200 7.66313 7.77676 8.04316 8.29408 8.36664 8.64958 8.85693 9.30468 9.42822 10.88061 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.006687 B = 0.004903 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4186.156832 B = 5709.533929 C = 9018.186479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.014 4.014 3 C -0.224 4.224 4 C 0.159 3.841 5 C -0.099 4.099 6 N -0.477 5.477 7 C 0.402 3.598 8 N -0.661 5.661 9 C 0.701 3.299 10 O -0.557 6.557 11 N -0.603 5.603 12 C 0.240 3.760 13 C -0.539 4.539 14 H 0.062 0.938 15 C 0.066 3.934 16 N -0.889 5.889 17 Si 0.897 3.103 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.187 3.813 22 C 0.118 3.882 23 C -0.148 4.148 24 C -0.084 4.084 25 C -0.182 4.182 26 C 0.093 3.907 27 N -0.464 5.464 28 C -0.224 4.224 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.127 0.873 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.423 0.577 37 H 0.024 0.976 38 H 0.052 0.948 39 H 0.265 0.735 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.139 0.861 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.151 0.849 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.216 12.567 -6.343 14.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.022 4.022 3 C -0.246 4.246 4 C 0.020 3.980 5 C -0.156 4.156 6 N -0.194 5.194 7 C 0.168 3.832 8 N -0.309 5.309 9 C 0.402 3.598 10 O -0.432 6.432 11 N -0.338 5.338 12 C 0.120 3.880 13 C -0.578 4.578 14 H 0.080 0.920 15 C -0.137 4.137 16 N -0.527 5.527 17 Si 0.724 3.276 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.198 1.198 21 C 0.062 3.938 22 C -0.021 4.021 23 C -0.169 4.169 24 C -0.111 4.111 25 C -0.202 4.202 26 C -0.065 4.065 27 N -0.173 5.173 28 C -0.248 4.248 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.145 0.855 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.264 0.736 37 H 0.041 0.959 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.116 0.884 41 H 0.109 0.891 42 H 0.157 0.843 43 H 0.146 0.854 44 H 0.146 0.854 45 H 0.169 0.831 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.892 12.241 -5.900 13.618 hybrid contribution -1.271 -0.345 0.323 1.356 sum -0.379 11.896 -5.577 13.144 Atomic orbital electron populations 1.20784 0.90467 1.02983 1.02701 1.19952 0.96192 0.92232 0.93854 1.21582 0.94724 0.98182 1.10134 1.21114 0.90748 0.93501 0.92629 1.20656 1.00366 0.91815 1.02804 1.67573 1.39125 0.96290 1.16381 1.18222 0.87396 0.86061 0.91508 1.43027 1.06761 1.07456 1.73698 1.15902 0.81039 0.84605 0.78262 1.90909 1.67767 1.28511 1.55984 1.47381 1.05173 1.06691 1.74557 1.19404 0.91936 0.79488 0.97194 1.21523 1.37557 1.05911 0.92807 0.91999 1.24936 0.95428 0.95935 0.97401 1.69933 1.39454 1.12444 1.30919 0.86513 0.78880 0.77625 0.84561 1.20596 1.21072 1.19769 1.20007 0.79506 1.04007 0.90271 1.21955 0.94170 0.88128 0.97836 1.22156 0.98762 1.00239 0.95723 1.21543 0.96667 0.97870 0.94978 1.22080 1.02951 0.93855 1.01307 1.22747 0.94511 0.98503 0.90695 1.67592 1.11062 1.28378 1.10311 1.21297 0.92633 0.99493 1.11386 0.90665 0.91267 0.91104 0.85539 0.90673 0.90401 0.91183 0.73590 0.95860 0.93042 0.92519 0.88439 0.89145 0.84281 0.85364 0.85389 0.83123 0.84817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.06 36.01 0.36 -0.71 16 2 C -0.01 -0.19 5.91 -104.35 -0.62 -0.81 16 3 C -0.22 -2.97 9.44 -39.42 -0.37 -3.34 16 4 C 0.16 2.48 6.78 -82.61 -0.56 1.92 16 5 C -0.10 -1.19 10.17 36.00 0.37 -0.82 16 6 N -0.48 -9.24 7.80 -8.60 -0.07 -9.31 16 7 C 0.40 7.63 7.42 -154.72 -1.15 6.48 16 8 N -0.66 -13.45 5.27 -15.81 -0.08 -13.54 16 9 C 0.70 15.41 8.24 -86.92 -0.72 14.69 16 10 O -0.56 -12.83 14.13 5.30 0.07 -12.76 16 11 N -0.60 -13.07 2.44 -182.19 -0.44 -13.51 16 12 C 0.24 5.76 4.97 -5.19 -0.03 5.73 16 13 C -0.54 -14.00 9.39 -34.44 -0.32 -14.32 16 14 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 15 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -24.36 13.29 55.43 0.74 -23.63 16 17 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 21 C 0.19 3.62 5.71 -5.20 -0.03 3.59 16 22 C 0.12 2.15 6.36 -82.59 -0.53 1.63 16 23 C -0.15 -2.40 9.72 -39.44 -0.38 -2.79 16 24 C -0.08 -1.15 10.18 -39.28 -0.40 -1.54 16 25 C -0.18 -2.34 10.11 -39.44 -0.40 -2.73 16 26 C 0.09 1.39 11.18 -17.55 -0.20 1.19 16 27 N -0.46 -8.55 10.27 -9.47 -0.10 -8.64 16 28 C -0.22 -3.52 9.64 -39.24 -0.38 -3.90 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 31 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 32 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.02 8.14 -51.92 -0.42 0.59 16 35 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 36 H 0.42 8.44 6.39 -40.82 -0.26 8.17 16 37 H 0.02 0.58 6.29 -51.93 -0.33 0.25 16 38 H 0.05 1.34 8.07 -51.92 -0.42 0.92 16 39 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.10 1.91 8.07 -51.93 -0.42 1.49 16 41 H 0.09 1.67 7.32 -51.93 -0.38 1.29 16 42 H 0.14 2.26 8.01 -52.49 -0.42 1.84 16 43 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 44 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 45 H 0.15 1.83 8.06 -52.49 -0.42 1.41 16 46 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 394.07 15.07 5.94 5.94 Total: -1.00 -32.04 394.07 -10.82 -42.86 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -6.41 Total: 11.05 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: -5.44 Total: 5.91 kcal Atomic # 7 Polarization: -68.67 SS G_CDS: 0.04 Total: -68.63 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.07 Total: -12.76 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.04 -10.82 -42.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125624082.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.597 kcal (2) G-P(sol) polarization free energy of solvation -32.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds