Wall clock time and date at job start Tue Mar 31 2020 06:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.39310 * 119.14517 * 2 1 4 4 C 1.36571 * 119.92677 * 180.02562 * 3 2 1 5 5 C 1.40808 * 118.15626 * 359.97438 * 4 3 2 6 6 C 1.40452 * 121.29202 * 179.97438 * 5 4 3 7 7 C 1.36182 * 119.92007 * 179.97438 * 6 5 4 8 8 C 1.39177 * 120.97220 * 0.02620 * 7 6 5 9 9 C 1.37809 * 120.82871 * 359.97438 * 8 7 6 10 10 N 1.39444 * 120.25986 * 179.97438 * 9 8 7 11 11 C 1.34768 * 120.00197 * 33.36928 * 10 9 8 12 12 O 1.21391 * 120.00140 * 5.44408 * 11 10 9 13 13 C 1.49322 * 119.99991 * 185.44725 * 11 10 9 14 14 O 1.21360 * 120.00336 * 6.24452 * 13 11 10 15 15 N 1.34781 * 119.99779 * 186.24787 * 13 11 10 16 16 C 1.46498 * 120.00120 * 5.54864 * 15 13 11 17 17 C 1.46500 * 119.99984 * 185.54371 * 15 13 11 18 18 H 1.09005 * 109.46961 * 359.97438 * 17 15 13 19 19 C 1.53001 * 109.47307 * 120.00122 * 17 15 13 20 20 C 1.50696 * 109.47525 * 240.00219 * 17 15 13 21 21 H 1.08011 * 119.99786 * 3.32486 * 20 17 15 22 22 C 1.37882 * 120.00611 * 183.32266 * 20 17 15 23 23 N 1.31506 * 120.00272 * 155.23221 * 22 20 17 24 24 Si 1.86797 * 119.99300 * 335.50778 * 22 20 17 25 25 H 1.48505 * 109.47137 * 269.72008 * 24 22 20 26 26 H 1.48494 * 109.47809 * 29.72345 * 24 22 20 27 27 H 1.48503 * 109.46924 * 149.72695 * 24 22 20 28 28 C 1.41279 * 119.47875 * 0.22896 * 9 8 7 29 29 N 1.31103 * 119.14025 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.46728 * 90.00130 * 1 2 3 31 31 H 1.08999 * 109.47245 * 209.99564 * 1 2 3 32 32 H 1.08995 * 109.47305 * 329.99921 * 1 2 3 33 33 H 1.08005 * 120.03595 * 0.04977 * 3 2 1 34 34 H 1.07996 * 120.92323 * 180.02562 * 4 3 2 35 35 H 1.08002 * 120.03761 * 359.97438 * 6 5 4 36 36 H 1.08001 * 119.51273 * 180.02562 * 7 6 5 37 37 H 1.08002 * 119.58716 * 179.97438 * 8 7 6 38 38 H 0.97006 * 120.00115 * 213.36719 * 10 9 8 39 39 H 1.09000 * 109.46838 * 275.89942 * 16 15 13 40 40 H 1.08994 * 109.47270 * 35.90276 * 16 15 13 41 41 H 1.08999 * 109.46977 * 155.90390 * 16 15 13 42 42 H 1.08997 * 109.47579 * 174.86880 * 19 17 15 43 43 H 1.09000 * 109.46753 * 294.86815 * 19 17 15 44 44 H 1.09003 * 109.46737 * 54.86460 * 19 17 15 45 45 H 0.97003 * 120.00071 * 355.26974 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1856 1.2167 0.0000 4 6 3.5511 1.2353 -0.0005 5 6 4.2324 0.0031 -0.0005 6 6 5.6358 -0.0546 -0.0016 7 6 6.2660 -1.2618 -0.0010 8 6 5.5396 -2.4490 0.0001 9 6 4.1616 -2.4338 0.0012 10 7 3.4456 -3.6304 0.0017 11 6 3.9365 -4.7091 0.6433 12 8 4.9512 -4.6135 1.3027 13 6 3.2324 -6.0220 0.5429 14 8 2.2847 -6.1468 -0.2049 15 7 3.6493 -7.0686 1.2828 16 6 4.7131 -6.8877 2.2735 17 6 3.0384 -8.3871 1.0963 18 1 2.2722 -8.3265 0.3234 19 6 4.1122 -9.3914 0.6731 20 6 2.4113 -8.8378 2.3904 21 1 2.4155 -8.1830 3.2493 22 6 1.8321 -10.0860 2.4779 23 7 1.7276 -10.6820 3.6455 24 14 1.2029 -10.9336 0.9368 25 1 -0.2197 -10.5688 0.7170 26 1 2.0111 -10.5009 -0.2313 27 1 1.3170 -12.4053 1.0998 28 6 3.4800 -1.1963 -0.0038 29 7 2.1455 -1.1451 -0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5138 33 1 1.6322 2.1442 0.0008 34 1 4.0934 2.1693 -0.0001 35 1 6.2144 0.8574 -0.0028 36 1 7.3454 -1.2985 -0.0014 37 1 6.0624 -3.3941 0.0001 38 1 2.5942 -3.6864 -0.4597 39 1 5.6834 -6.9643 1.7828 40 1 4.6161 -5.9053 2.7356 41 1 4.6314 -7.6591 3.0393 42 1 3.6768 -10.3894 0.6228 43 1 4.5020 -9.1153 -0.3067 44 1 4.9230 -9.3850 1.4016 45 1 2.1187 -10.2751 4.4345 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131969600.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:38 Heat of formation + Delta-G solvation = 2.028182 kcal Electronic energy + Delta-G solvation = -29125.510179 eV Core-core repulsion = 25108.685783 eV Total energy + Delta-G solvation = -4016.824396 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.43759 -40.39404 -38.53225 -37.29241 -36.03622 -35.06627 -32.95379 -32.72091 -32.21963 -30.28936 -29.51659 -28.02798 -26.38439 -25.17612 -24.55753 -24.13016 -22.86704 -22.07168 -20.61119 -19.34124 -18.38279 -17.96928 -17.52757 -17.21432 -16.50440 -16.40013 -15.76746 -15.51079 -15.06735 -14.94285 -14.80287 -14.23807 -14.04242 -13.69255 -13.56158 -13.31387 -13.24258 -13.12774 -12.73167 -12.58437 -12.49984 -12.31352 -12.00274 -11.94983 -11.72223 -11.64605 -11.54485 -11.27185 -11.12028 -10.85064 -10.55238 -10.12971 -9.98254 -9.79253 -9.68395 -9.23133 -9.02333 -8.86613 -8.32581 -7.98128 -7.86031 -6.57089 -4.17160 0.11391 0.56169 1.48144 1.94854 2.56200 2.70594 3.39029 3.44816 3.53999 3.57754 3.80778 3.88851 3.90454 4.31890 4.43837 4.44918 4.55112 4.61897 4.69027 4.94256 4.99168 5.11581 5.13188 5.21402 5.32592 5.34035 5.60108 5.65942 5.74026 5.83255 5.92348 5.98506 6.08341 6.11471 6.23715 6.26689 6.32764 6.37167 6.47718 6.53488 6.67297 6.85101 6.94865 7.16564 7.26417 7.65816 7.73575 7.86208 8.13211 8.28285 8.45822 8.82288 9.47327 10.78793 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017344 B = 0.002730 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.024487 B =10252.647555 C =11259.830554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.155 3.845 3 C -0.169 4.169 4 C -0.057 4.057 5 C -0.089 4.089 6 C -0.119 4.119 7 C -0.089 4.089 8 C -0.114 4.114 9 C 0.174 3.826 10 N -0.636 5.636 11 C 0.508 3.492 12 O -0.499 6.499 13 C 0.495 3.505 14 O -0.533 6.533 15 N -0.547 5.547 16 C 0.084 3.916 17 C 0.235 3.765 18 H 0.057 0.943 19 C -0.154 4.154 20 C -0.625 4.625 21 H 0.064 0.936 22 C 0.046 3.954 23 N -0.889 5.889 24 Si 1.035 2.965 25 H -0.283 1.283 26 H -0.271 1.271 27 H -0.284 1.284 28 C 0.118 3.882 29 N -0.471 5.471 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.144 0.856 38 H 0.429 0.571 39 H 0.051 0.949 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.062 0.938 43 H 0.028 0.972 44 H 0.050 0.950 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.239 24.669 -8.658 26.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.002 3.998 3 C -0.189 4.189 4 C -0.083 4.083 5 C -0.092 4.092 6 C -0.139 4.139 7 C -0.108 4.108 8 C -0.137 4.137 9 C 0.078 3.922 10 N -0.281 5.281 11 C 0.292 3.708 12 O -0.373 6.373 13 C 0.276 3.724 14 O -0.411 6.411 15 N -0.277 5.277 16 C -0.059 4.059 17 C 0.134 3.866 18 H 0.075 0.925 19 C -0.212 4.212 20 C -0.662 4.662 21 H 0.082 0.918 22 C -0.162 4.162 23 N -0.520 5.520 24 Si 0.862 3.138 25 H -0.210 1.210 26 H -0.196 1.196 27 H -0.210 1.210 28 C -0.006 4.006 29 N -0.180 5.180 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.155 0.845 34 H 0.158 0.842 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.162 0.838 38 H 0.268 0.732 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.047 0.953 44 H 0.069 0.931 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.272 22.292 -9.064 24.635 hybrid contribution 0.929 2.216 0.559 2.467 sum 6.201 24.508 -8.505 26.672 Atomic orbital electron populations 1.20797 0.88450 1.03867 1.03405 1.21464 0.97212 0.87966 0.93168 1.21715 0.95066 0.99220 1.02864 1.21437 0.94414 0.97100 0.95374 1.18607 0.94759 0.93252 1.02552 1.20897 0.92362 0.98562 1.02034 1.20762 1.00383 0.91501 0.98132 1.21184 0.91743 1.00125 1.00657 1.17433 0.90854 0.83690 1.00261 1.43064 1.25061 1.07959 1.52051 1.20863 0.85430 0.85713 0.78828 1.90719 1.24398 1.84758 1.37430 1.19585 0.84982 0.84639 0.83218 1.90724 1.27088 1.83411 1.39904 1.47967 1.35814 1.09564 1.34366 1.21934 0.88903 1.02885 0.92177 1.19407 0.91675 0.76349 0.99215 0.92512 1.22448 1.00046 1.00259 0.98438 1.22042 1.43692 1.03526 0.96934 0.91826 1.25645 0.94053 0.93986 1.02542 1.70824 1.42740 1.37820 1.00662 0.84254 0.77380 0.76249 0.75947 1.20991 1.19629 1.20978 1.18548 0.89369 0.91658 1.01012 1.67703 1.08004 1.29283 1.13052 0.90029 0.90034 0.90523 0.84494 0.84173 0.85182 0.85011 0.83828 0.73212 0.93032 0.90799 0.90154 0.91931 0.95286 0.93057 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.14 36.01 0.37 -0.46 16 2 C 0.15 1.63 6.78 -82.50 -0.56 1.07 16 3 C -0.17 -1.38 9.64 -39.79 -0.38 -1.76 16 4 C -0.06 -0.47 9.89 -39.21 -0.39 -0.86 16 5 C -0.09 -0.97 5.74 -106.81 -0.61 -1.59 16 6 C -0.12 -1.08 9.76 -39.49 -0.39 -1.47 16 7 C -0.09 -0.88 9.94 -39.97 -0.40 -1.28 16 8 C -0.11 -1.47 8.63 -39.39 -0.34 -1.81 16 9 C 0.17 2.52 6.32 -83.40 -0.53 2.00 16 10 N -0.64 -10.09 5.17 -10.06 -0.05 -10.14 16 11 C 0.51 9.09 7.42 -11.65 -0.09 9.00 16 12 O -0.50 -8.96 11.09 5.46 0.06 -8.90 16 13 C 0.50 10.39 7.72 -11.64 -0.09 10.30 16 14 O -0.53 -12.20 15.85 5.49 0.09 -12.11 16 15 N -0.55 -11.98 2.75 -175.82 -0.48 -12.46 16 16 C 0.08 1.61 8.07 59.85 0.48 2.09 16 17 C 0.23 5.72 2.19 -69.08 -0.15 5.57 16 18 H 0.06 1.48 5.86 -51.93 -0.30 1.18 16 19 C -0.15 -3.35 8.57 37.16 0.32 -3.03 16 20 C -0.62 -17.21 8.20 -34.44 -0.28 -17.50 16 21 H 0.06 1.89 7.80 -52.48 -0.41 1.48 16 22 C 0.05 1.28 5.17 -17.82 -0.09 1.19 16 23 N -0.89 -26.40 13.70 55.43 0.76 -25.64 16 24 Si 1.03 24.77 26.19 -169.99 -4.45 20.32 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.27 -6.02 5.72 56.52 0.32 -5.69 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 C 0.12 1.60 6.62 -84.69 -0.56 1.04 16 29 N -0.47 -6.39 9.79 -7.10 -0.07 -6.46 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.41 8.07 -51.93 -0.42 -0.01 16 33 H 0.14 0.68 8.06 -52.48 -0.42 0.25 16 34 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.14 1.93 6.37 -52.49 -0.33 1.60 16 38 H 0.43 6.71 8.06 -40.82 -0.33 6.39 16 39 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 40 H 0.07 1.38 6.03 -51.93 -0.31 1.06 16 41 H 0.08 1.62 7.17 -51.93 -0.37 1.25 16 42 H 0.06 1.38 4.73 -51.93 -0.25 1.14 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.05 1.06 7.50 -51.93 -0.39 0.67 16 45 H 0.27 8.00 8.73 -40.82 -0.36 7.65 16 LS Contribution 370.34 15.07 5.58 5.58 Total: -1.00 -32.84 370.34 -7.99 -40.83 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -5.73 Total: 6.51 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -3.69 Total: 2.49 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: 0.15 Total: -54.71 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: 0.15 Total: -21.01 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -4.45 Total: 20.32 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.84 -7.99 -40.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131969600.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.856 kcal (2) G-P(sol) polarization free energy of solvation -32.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds