Wall clock time and date at job start Tue Mar 31 2020 06:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39317 * 119.14437 * 2 1 4 4 C 1.36577 * 119.92247 * 179.97438 * 3 2 1 5 5 C 1.40802 * 118.16200 * 0.02562 * 4 3 2 6 6 C 1.40449 * 121.29469 * 179.97438 * 5 4 3 7 7 C 1.36189 * 119.92059 * 180.02562 * 6 5 4 8 8 C 1.39170 * 120.97302 * 0.02562 * 7 6 5 9 9 C 1.37822 * 120.82774 * 0.02562 * 8 7 6 10 10 N 1.39444 * 120.25776 * 179.97438 * 9 8 7 11 11 C 1.34772 * 120.00028 * 34.77837 * 10 9 8 12 12 O 1.21384 * 120.00166 * 355.33193 * 11 10 9 13 13 C 1.49321 * 119.99917 * 175.33297 * 11 10 9 14 14 O 1.21371 * 119.99774 * 5.93559 * 13 11 10 15 15 N 1.34778 * 120.00296 * 185.93550 * 13 11 10 16 16 C 1.46491 * 119.99773 * 356.45107 * 15 13 11 17 17 C 1.46500 * 120.00089 * 176.45269 * 15 13 11 18 18 H 1.08998 * 109.47444 * 359.97438 * 17 15 13 19 19 C 1.53002 * 109.46622 * 239.99810 * 17 15 13 20 20 C 1.50693 * 109.47359 * 119.99956 * 17 15 13 21 21 H 1.08001 * 119.99711 * 0.02562 * 20 17 15 22 22 C 1.37879 * 120.00392 * 179.97438 * 20 17 15 23 23 N 1.31520 * 119.99645 * 359.97438 * 22 20 17 24 24 Si 1.86801 * 120.00247 * 180.02562 * 22 20 17 25 25 H 1.48506 * 109.46720 * 270.00078 * 24 22 20 26 26 H 1.48499 * 109.47077 * 29.99751 * 24 22 20 27 27 H 1.48497 * 109.46956 * 150.00073 * 24 22 20 28 28 C 1.41278 * 119.48147 * 0.23202 * 9 8 7 29 29 N 1.31110 * 119.14430 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.46855 * 89.99902 * 1 2 3 31 31 H 1.08995 * 109.47201 * 209.99589 * 1 2 3 32 32 H 1.08998 * 109.47143 * 329.99809 * 1 2 3 33 33 H 1.08004 * 120.03653 * 0.02708 * 3 2 1 34 34 H 1.08002 * 120.91785 * 180.02562 * 4 3 2 35 35 H 1.07999 * 120.03714 * 359.97438 * 6 5 4 36 36 H 1.08001 * 119.51049 * 180.02562 * 7 6 5 37 37 H 1.07996 * 119.58799 * 179.97438 * 8 7 6 38 38 H 0.97001 * 119.99518 * 214.77353 * 10 9 8 39 39 H 1.09006 * 109.47516 * 275.97809 * 16 15 13 40 40 H 1.08999 * 109.47460 * 35.97457 * 16 15 13 41 41 H 1.08999 * 109.47778 * 155.97478 * 16 15 13 42 42 H 1.09005 * 109.47104 * 179.97438 * 19 17 15 43 43 H 1.08991 * 109.47610 * 299.99769 * 19 17 15 44 44 H 1.08998 * 109.47263 * 60.00469 * 19 17 15 45 45 H 0.96994 * 119.99805 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1855 1.2168 0.0000 4 6 3.5511 1.2353 0.0005 5 6 4.2325 0.0031 0.0005 6 6 5.6358 -0.0546 0.0005 7 6 6.2660 -1.2618 0.0000 8 6 5.5397 -2.4490 -0.0011 9 6 4.1615 -2.4337 -0.0022 10 7 3.4456 -3.6304 -0.0038 11 6 3.9218 -4.7014 0.6613 12 8 5.0130 -4.6513 1.1906 13 6 3.1070 -5.9498 0.7472 14 8 2.0660 -6.0387 0.1295 15 7 3.5274 -6.9778 1.5107 16 6 4.8209 -6.9014 2.1942 17 6 2.6910 -8.1716 1.6569 18 1 1.7744 -8.0460 1.0806 19 6 2.3415 -8.3716 3.1330 20 6 3.4419 -9.3762 1.1508 21 1 4.4423 -9.2638 0.7598 22 6 2.8522 -10.6219 1.1880 23 7 1.6345 -10.7590 1.6656 24 14 3.7833 -12.1152 0.5613 25 1 3.5051 -12.3005 -0.8857 26 1 5.2402 -11.9106 0.7630 27 1 3.3447 -13.3213 1.3082 28 6 3.4799 -1.1963 -0.0072 29 7 2.1455 -1.1451 -0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5137 32 1 -0.3633 0.8899 0.5138 33 1 1.6321 2.1443 0.0004 34 1 4.0934 2.1693 0.0010 35 1 6.2143 0.8574 0.0001 36 1 7.3454 -1.2985 0.0004 37 1 6.0624 -3.3940 -0.0020 38 1 2.6049 -3.6918 -0.4837 39 1 5.6126 -7.2034 1.5086 40 1 4.9974 -5.8778 2.5246 41 1 4.8152 -7.5661 3.0581 42 1 1.7188 -9.2597 3.2418 43 1 3.2578 -8.4972 3.7096 44 1 1.7983 -7.5004 3.4990 45 1 1.2195 -11.6353 1.6914 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131969852.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:42 Heat of formation + Delta-G solvation = 3.659688 kcal Electronic energy + Delta-G solvation = -29063.693761 eV Core-core repulsion = 25046.940112 eV Total energy + Delta-G solvation = -4016.753648 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.38874 -40.31839 -38.40222 -37.22864 -35.91182 -34.96157 -32.92536 -32.67271 -32.17753 -29.67701 -29.33382 -27.98326 -26.27802 -25.30122 -24.71861 -24.10950 -22.82505 -22.03210 -20.60400 -19.39342 -18.36129 -17.89407 -17.22372 -16.53733 -16.33830 -16.17027 -15.62205 -15.54122 -15.04360 -14.88939 -14.75791 -14.40635 -14.12949 -13.62835 -13.51581 -13.23851 -13.19960 -13.07061 -12.61825 -12.56098 -12.39135 -12.23795 -11.93830 -11.60617 -11.56529 -11.48515 -11.09058 -11.06623 -10.85066 -10.79047 -10.61148 -10.23928 -10.20194 -9.91601 -9.74457 -9.23329 -8.90672 -8.74205 -8.46281 -7.92015 -7.70617 -6.10973 -4.19139 0.15520 0.60056 1.55586 2.00768 2.65061 2.76269 3.26944 3.33282 3.36123 3.65884 3.85441 3.94215 4.00859 4.34903 4.37752 4.49870 4.58538 4.68912 4.78500 4.98548 5.03197 5.18288 5.20781 5.24844 5.36391 5.36769 5.63952 5.69892 5.77073 5.89177 6.01263 6.04359 6.11611 6.23274 6.31569 6.38895 6.56594 6.69096 6.74539 6.77381 6.96588 7.12003 7.30367 7.38982 7.65807 7.70539 7.86705 8.00359 8.09832 8.35362 8.61268 8.86321 9.47001 10.94543 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019046 B = 0.002588 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.739203 B =10816.622816 C =11751.876583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.154 3.846 3 C -0.170 4.170 4 C -0.058 4.058 5 C -0.090 4.090 6 C -0.119 4.119 7 C -0.091 4.091 8 C -0.114 4.114 9 C 0.171 3.829 10 N -0.636 5.636 11 C 0.508 3.492 12 O -0.501 6.501 13 C 0.494 3.506 14 O -0.532 6.532 15 N -0.551 5.551 16 C 0.072 3.928 17 C 0.255 3.745 18 H 0.067 0.933 19 C -0.148 4.148 20 C -0.527 4.527 21 H 0.062 0.938 22 C 0.066 3.934 23 N -0.888 5.888 24 Si 0.901 3.099 25 H -0.279 1.279 26 H -0.273 1.273 27 H -0.285 1.285 28 C 0.118 3.882 29 N -0.470 5.470 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.150 0.850 38 H 0.429 0.571 39 H 0.052 0.948 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.034 0.966 44 H 0.013 0.987 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.476 25.043 -2.286 25.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.001 3.999 3 C -0.189 4.189 4 C -0.083 4.083 5 C -0.093 4.093 6 C -0.139 4.139 7 C -0.109 4.109 8 C -0.136 4.136 9 C 0.074 3.926 10 N -0.281 5.281 11 C 0.293 3.707 12 O -0.376 6.376 13 C 0.274 3.726 14 O -0.411 6.411 15 N -0.282 5.282 16 C -0.071 4.071 17 C 0.155 3.845 18 H 0.085 0.915 19 C -0.207 4.207 20 C -0.565 4.565 21 H 0.080 0.920 22 C -0.137 4.137 23 N -0.526 5.526 24 Si 0.729 3.271 25 H -0.205 1.205 26 H -0.198 1.198 27 H -0.211 1.211 28 C -0.006 4.006 29 N -0.179 5.179 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.155 0.845 34 H 0.158 0.842 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.168 0.832 38 H 0.268 0.732 39 H 0.071 0.929 40 H 0.105 0.895 41 H 0.089 0.911 42 H 0.116 0.884 43 H 0.053 0.947 44 H 0.032 0.968 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.130 23.877 -2.134 24.326 hybrid contribution 0.644 -0.071 -0.487 0.811 sum 4.774 23.806 -2.621 24.421 Atomic orbital electron populations 1.20792 0.88483 1.03827 1.03395 1.21465 0.97202 0.87977 0.93233 1.21711 0.95059 0.99204 1.02964 1.21433 0.94411 0.97094 0.95409 1.18605 0.94757 0.93250 1.02657 1.20902 0.92365 0.98565 1.02034 1.20800 1.00409 0.91563 0.98142 1.21374 0.91845 1.00344 1.00081 1.17466 0.90837 0.83675 1.00639 1.43059 1.26305 1.08518 1.50200 1.21023 0.86773 0.85047 0.77886 1.90627 1.20536 1.82580 1.43860 1.19515 0.86217 0.84108 0.82712 1.90737 1.24139 1.81484 1.44732 1.48255 1.20133 1.16289 1.43474 1.22143 0.84160 1.03255 0.97524 1.19173 0.91290 0.79614 0.94404 0.91547 1.22119 1.00287 1.01314 0.96935 1.21276 1.01798 0.91434 1.42007 0.92029 1.24888 0.94979 0.98879 0.94959 1.69874 1.13322 1.24087 1.45278 0.86443 0.79971 0.81774 0.78925 1.20547 1.19833 1.21063 1.18580 0.89360 0.91712 1.00907 1.67716 1.08009 1.29227 1.12982 0.90049 0.90025 0.90571 0.84542 0.84226 0.85251 0.85041 0.83204 0.73233 0.92944 0.89471 0.91145 0.88418 0.94725 0.96779 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.14 36.01 0.37 -0.47 16 2 C 0.15 1.63 6.78 -82.50 -0.56 1.07 16 3 C -0.17 -1.40 9.64 -39.78 -0.38 -1.78 16 4 C -0.06 -0.48 9.89 -39.21 -0.39 -0.87 16 5 C -0.09 -0.99 5.74 -106.81 -0.61 -1.61 16 6 C -0.12 -1.10 9.76 -39.49 -0.39 -1.49 16 7 C -0.09 -0.91 9.94 -39.97 -0.40 -1.31 16 8 C -0.11 -1.49 8.67 -39.39 -0.34 -1.83 16 9 C 0.17 2.50 6.35 -83.39 -0.53 1.97 16 10 N -0.64 -10.25 5.17 -10.06 -0.05 -10.30 16 11 C 0.51 9.24 7.61 -11.65 -0.09 9.15 16 12 O -0.50 -9.00 10.55 5.47 0.06 -8.94 16 13 C 0.49 10.67 7.73 -11.65 -0.09 10.58 16 14 O -0.53 -12.73 15.82 5.48 0.09 -12.64 16 15 N -0.55 -12.35 2.75 -175.83 -0.48 -12.83 16 16 C 0.07 1.38 8.75 59.84 0.52 1.90 16 17 C 0.25 6.54 2.63 -69.08 -0.18 6.36 16 18 H 0.07 1.93 6.90 -51.93 -0.36 1.57 16 19 C -0.15 -3.55 8.96 37.16 0.33 -3.22 16 20 C -0.53 -14.33 8.37 -34.44 -0.29 -14.62 16 21 H 0.06 1.67 7.65 -52.49 -0.40 1.27 16 22 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 23 N -0.89 -24.92 11.32 55.43 0.63 -24.30 16 24 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 C 0.12 1.62 6.62 -84.69 -0.56 1.06 16 29 N -0.47 -6.43 9.81 -7.10 -0.07 -6.50 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.40 8.07 -51.93 -0.42 -0.01 16 33 H 0.14 0.69 8.06 -52.48 -0.42 0.26 16 34 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 35 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.15 2.08 6.15 -52.49 -0.32 1.76 16 38 H 0.43 6.86 8.06 -40.82 -0.33 6.53 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.09 1.56 5.36 -51.94 -0.28 1.28 16 41 H 0.07 1.32 6.44 -51.93 -0.33 0.99 16 42 H 0.10 2.54 6.07 -51.93 -0.32 2.23 16 43 H 0.03 0.77 6.67 -51.93 -0.35 0.42 16 44 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 373.65 15.07 5.63 5.63 Total: -1.00 -31.85 373.65 -8.53 -40.37 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -5.62 Total: 6.83 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: -3.68 Total: 6.59 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: 0.02 Total: -53.92 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: 0.14 Total: -21.58 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.85 -8.53 -40.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131969852.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.034 kcal (2) G-P(sol) polarization free energy of solvation -31.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds