Wall clock time and date at job start Tue Mar 31 2020 05:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86789 * 120.00160 * 2 1 4 4 H 1.48502 * 109.47006 * 269.99498 * 3 2 1 5 5 H 1.48499 * 109.47462 * 29.99396 * 3 2 1 6 6 H 1.48505 * 109.47377 * 149.99987 * 3 2 1 7 7 C 1.37878 * 119.99614 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00393 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00038 * 180.02562 * 7 2 1 10 10 N 1.46501 * 109.47355 * 180.02562 * 9 7 2 11 11 C 1.34778 * 119.99919 * 99.51981 * 10 9 7 12 12 O 1.21555 * 119.99800 * 177.28396 * 11 10 9 13 13 C 1.47834 * 120.00040 * 357.28853 * 11 10 9 14 14 C 1.40029 * 120.55716 * 158.47840 * 13 11 10 15 15 C 1.38356 * 118.28450 * 179.73347 * 14 13 11 16 16 C 1.38354 * 119.30803 * 0.52034 * 15 14 13 17 17 N 1.31931 * 121.07590 * 359.74408 * 16 15 14 18 18 C 1.31695 * 121.87859 * 359.97438 * 17 16 15 19 19 C 1.46501 * 119.99600 * 279.79950 * 10 9 7 20 20 C 1.52992 * 109.47136 * 304.27532 * 19 10 9 21 21 C 1.52997 * 109.47149 * 180.02562 * 20 19 10 22 22 C 1.53000 * 109.47181 * 300.00129 * 21 20 19 23 23 C 1.52997 * 109.46857 * 59.99908 * 22 21 20 24 24 C 1.53002 * 109.47230 * 60.00459 * 23 22 21 25 25 C 1.53000 * 109.46826 * 299.99560 * 24 23 22 26 26 C 1.53001 * 109.47352 * 60.00328 * 21 20 19 27 27 C 1.52999 * 109.46605 * 184.28016 * 19 10 9 28 28 C 1.52993 * 109.47288 * 64.28062 * 19 10 9 29 29 H 0.96995 * 119.99703 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47216 * 59.99583 * 9 7 2 31 31 H 1.08999 * 109.46848 * 300.00004 * 9 7 2 32 32 H 1.07994 * 120.85751 * 359.97438 * 14 13 11 33 33 H 1.07999 * 120.34449 * 180.25885 * 15 14 13 34 34 H 1.07999 * 119.46575 * 179.76330 * 16 15 14 35 35 H 1.07999 * 119.71290 * 180.02562 * 18 17 16 36 36 H 1.09003 * 109.47571 * 300.00588 * 20 19 10 37 37 H 1.09004 * 109.47422 * 60.00603 * 20 19 10 38 38 H 1.09005 * 109.47402 * 180.02562 * 21 20 19 39 39 H 1.08997 * 109.47286 * 300.00146 * 22 21 20 40 40 H 1.09007 * 109.47209 * 180.02562 * 22 21 20 41 41 H 1.09009 * 109.46851 * 179.97438 * 23 22 21 42 42 H 1.09005 * 109.47134 * 180.02562 * 24 23 22 43 43 H 1.08993 * 109.47478 * 59.99591 * 24 23 22 44 44 H 1.08997 * 109.47286 * 179.97438 * 25 24 23 45 45 H 1.08993 * 109.47492 * 180.02562 * 26 21 20 46 46 H 1.08995 * 109.47008 * 59.99746 * 26 21 20 47 47 H 1.09004 * 109.47513 * 299.99696 * 27 19 10 48 48 H 1.08995 * 109.47712 * 60.00066 * 27 19 10 49 49 H 1.09003 * 109.47390 * 299.99495 * 28 19 10 50 50 H 1.09000 * 109.47591 * 59.99544 * 28 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 7 3.9998 -2.5755 0.0010 11 6 4.4068 -3.1462 -1.1501 12 8 4.8581 -4.2749 -1.1425 13 6 4.3046 -2.3995 -2.4219 14 6 5.0978 -2.7527 -3.5206 15 6 4.9598 -2.0256 -4.6895 16 6 4.0593 -0.9761 -4.7320 17 7 3.3288 -0.6625 -3.6791 18 6 3.4200 -1.3278 -2.5462 19 6 4.0398 -3.3383 1.2511 20 6 4.8612 -2.5722 2.2899 21 6 4.9036 -3.3691 3.5952 22 6 3.4794 -3.5686 4.1174 23 6 2.6580 -4.3347 3.0786 24 6 3.3031 -5.6983 2.8230 25 6 4.7273 -5.4988 2.3008 26 6 5.5488 -4.7327 3.3397 27 6 4.6847 -4.7020 0.9958 28 6 2.6155 -3.5373 1.7730 29 1 -0.4849 0.8400 -0.0004 30 1 3.8745 -0.6802 0.8910 31 1 3.8752 -0.6806 -0.8888 32 1 5.7963 -3.5739 -3.4582 33 1 5.5519 -2.2721 -5.5585 34 1 3.9523 -0.4044 -5.6420 35 1 2.8048 -1.0412 -1.7061 36 1 5.8760 -2.4303 1.9181 37 1 4.4019 -1.6005 2.4718 38 1 5.4885 -2.8231 4.3355 39 1 3.0197 -2.5972 4.2995 40 1 3.5096 -4.1360 5.0477 41 1 1.6434 -4.4772 3.4508 42 1 2.7181 -6.2439 2.0825 43 1 3.3332 -6.2660 3.7529 44 1 5.1871 -6.4702 2.1191 45 1 5.5785 -5.3006 4.2695 46 1 6.5634 -4.5905 2.9677 47 1 4.0995 -5.2479 0.2557 48 1 5.6994 -4.5603 0.6241 49 1 2.1560 -2.5657 1.9549 50 1 2.0302 -4.0830 1.0329 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133705787.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:36 Heat of formation + Delta-G solvation = 16.708486 kcal Electronic energy + Delta-G solvation = -32321.834268 eV Core-core repulsion = 28506.905463 eV Total energy + Delta-G solvation = -3814.928805 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.86417 -41.38082 -39.70772 -37.29363 -34.77221 -33.72285 -33.49043 -33.33085 -33.17668 -31.12450 -29.96598 -26.89937 -26.75733 -25.54120 -24.66845 -24.17263 -22.62469 -22.33652 -22.10048 -20.44190 -19.10882 -18.38039 -18.17116 -17.96472 -17.48209 -16.75777 -16.35709 -16.06985 -15.71596 -15.39221 -15.33116 -15.01422 -14.91600 -14.71935 -14.51377 -14.25149 -14.23192 -14.00893 -13.93888 -13.89522 -13.55125 -13.22206 -13.19576 -13.15855 -12.70381 -12.39060 -12.31209 -11.96579 -11.85243 -11.71267 -11.67275 -11.59567 -11.54117 -11.19069 -10.91803 -10.83892 -10.65103 -10.51707 -10.41963 -10.01367 -9.79198 -9.34682 -8.37466 -6.42993 -0.23382 0.29527 1.33441 1.39168 1.42079 1.85681 2.11688 2.27234 2.85539 2.97438 3.42597 3.63935 3.65112 3.81801 3.85566 3.93956 4.05201 4.10587 4.17854 4.22453 4.30765 4.35006 4.35854 4.40128 4.48644 4.50758 4.53384 4.55108 4.69145 4.78281 4.82094 4.89316 4.91408 4.92840 5.01168 5.08049 5.16844 5.20157 5.21689 5.22540 5.24202 5.26985 5.32377 5.33928 5.45154 5.46814 5.61780 5.65873 5.69763 5.75198 5.85346 6.10343 6.54900 6.66623 7.01960 7.14759 7.25759 8.76265 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010958 B = 0.005725 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.658968 B = 4889.494080 C = 6619.295625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.042 3.958 3 Si 0.909 3.091 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.242 1.242 7 C -0.532 4.532 8 H 0.050 0.950 9 C 0.191 3.809 10 N -0.579 5.579 11 C 0.554 3.446 12 O -0.566 6.566 13 C -0.216 4.216 14 C -0.030 4.030 15 C -0.176 4.176 16 C 0.106 3.894 17 N -0.525 5.525 18 C 0.079 3.921 19 C 0.180 3.820 20 C -0.116 4.116 21 C -0.077 4.077 22 C -0.103 4.103 23 C -0.084 4.084 24 C -0.102 4.102 25 C -0.094 4.094 26 C -0.100 4.100 27 C -0.076 4.076 28 C -0.107 4.107 29 H 0.271 0.729 30 H 0.042 0.958 31 H 0.052 0.948 32 H 0.153 0.847 33 H 0.183 0.817 34 H 0.191 0.809 35 H 0.209 0.791 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.045 0.955 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.086 0.914 46 H 0.062 0.938 47 H 0.051 0.949 48 H 0.058 0.942 49 H 0.063 0.937 50 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.774 -5.864 2.790 14.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.160 4.160 3 Si 0.732 3.268 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.165 1.165 7 C -0.570 4.570 8 H 0.068 0.932 9 C 0.069 3.931 10 N -0.306 5.306 11 C 0.343 3.657 12 O -0.449 6.449 13 C -0.221 4.221 14 C -0.056 4.056 15 C -0.195 4.195 16 C -0.050 4.050 17 N -0.234 5.234 18 C -0.075 4.075 19 C 0.096 3.904 20 C -0.154 4.154 21 C -0.096 4.096 22 C -0.140 4.140 23 C -0.103 4.103 24 C -0.140 4.140 25 C -0.113 4.113 26 C -0.138 4.138 27 C -0.114 4.114 28 C -0.146 4.146 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.170 0.830 33 H 0.200 0.800 34 H 0.208 0.792 35 H 0.224 0.776 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.110 0.890 39 H 0.073 0.927 40 H 0.106 0.894 41 H 0.087 0.913 42 H 0.064 0.936 43 H 0.104 0.896 44 H 0.097 0.903 45 H 0.104 0.896 46 H 0.081 0.919 47 H 0.070 0.930 48 H 0.076 0.924 49 H 0.081 0.919 50 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 12.250 -5.613 2.773 13.757 hybrid contribution -0.137 0.395 -0.473 0.631 sum 12.113 -5.218 2.300 13.388 Atomic orbital electron populations 1.69989 1.07907 1.28517 1.49185 1.25563 0.95288 1.02009 0.93183 0.86267 0.80391 0.80219 0.79907 1.18809 1.20191 1.16479 1.21280 0.90209 0.93911 1.51585 0.93161 1.20403 0.93795 0.80050 0.98820 1.47948 1.60773 1.14641 1.07255 1.18361 0.77689 0.85714 0.83930 1.90727 1.48602 1.18863 1.86686 1.21227 1.03325 1.00765 0.96742 1.21917 0.95181 0.97398 0.91112 1.22461 1.01126 0.96725 0.99227 1.23777 0.89816 0.94337 0.97111 1.67978 1.24366 1.30478 1.00600 1.25823 0.94812 0.89489 0.97419 1.20508 0.95550 0.91719 0.82574 1.21875 0.99024 0.98841 0.95681 1.21053 0.96891 0.96363 0.95261 1.21532 0.94535 1.00032 0.97947 1.21101 0.99458 0.95387 0.94342 1.21525 0.95343 0.95902 1.01198 1.21317 0.96194 0.98990 0.94805 1.21528 0.98092 0.95054 0.99078 1.21859 1.00286 0.93392 0.95872 1.21867 0.95431 1.00530 0.96729 0.91907 0.94003 0.93075 0.82968 0.79968 0.79192 0.77579 0.92129 0.92438 0.89039 0.92742 0.89412 0.91331 0.93629 0.89605 0.90300 0.89595 0.91894 0.93030 0.92383 0.91854 0.95741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.21 13.96 21.45 0.30 -52.91 16 2 C 0.04 2.25 5.30 84.65 0.45 2.70 16 3 Si 0.91 40.52 27.31 68.60 1.87 42.39 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.24 -9.85 6.54 99.48 0.65 -9.20 16 7 C -0.53 -27.72 5.94 25.60 0.15 -27.57 16 8 H 0.05 2.98 6.85 -2.91 -0.02 2.96 16 9 C 0.19 8.57 3.45 85.63 0.30 8.86 16 10 N -0.58 -24.49 2.45 -782.48 -1.92 -26.41 16 11 C 0.55 23.68 7.47 86.78 0.65 24.33 16 12 O -0.57 -24.53 11.83 -3.89 -0.05 -24.57 16 13 C -0.22 -8.66 5.64 -19.99 -0.11 -8.77 16 14 C -0.03 -0.93 9.72 22.73 0.22 -0.71 16 15 C -0.18 -4.40 10.10 22.33 0.23 -4.17 16 16 C 0.11 3.09 11.17 84.71 0.95 4.04 16 17 N -0.52 -21.05 10.35 -194.75 -2.01 -23.06 16 18 C 0.08 3.45 8.75 85.02 0.74 4.20 16 19 C 0.18 6.68 0.86 3.60 0.00 6.68 16 20 C -0.12 -3.68 4.32 30.59 0.13 -3.54 16 21 C -0.08 -1.86 3.19 -10.79 -0.03 -1.90 16 22 C -0.10 -2.55 5.19 30.59 0.16 -2.39 16 23 C -0.08 -2.48 3.19 -10.78 -0.03 -2.52 16 24 C -0.10 -2.66 5.19 30.59 0.16 -2.50 16 25 C -0.09 -2.49 3.19 -10.81 -0.03 -2.52 16 26 C -0.10 -2.18 5.19 30.60 0.16 -2.03 16 27 C -0.08 -2.67 2.83 30.58 0.09 -2.58 16 28 C -0.11 -4.18 3.39 30.61 0.10 -4.08 16 29 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 30 H 0.04 1.83 5.40 -2.39 -0.01 1.81 16 31 H 0.05 2.34 3.76 -2.39 -0.01 2.33 16 32 H 0.15 4.25 7.88 -2.91 -0.02 4.23 16 33 H 0.18 2.73 8.06 -2.91 -0.02 2.71 16 34 H 0.19 3.82 8.06 -2.91 -0.02 3.80 16 35 H 0.21 10.18 2.18 -2.91 -0.01 10.17 16 36 H 0.06 1.87 8.14 -2.39 -0.02 1.86 16 37 H 0.06 1.97 6.66 -2.38 -0.02 1.95 16 38 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 39 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 41 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 42 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 43 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.05 2.11 6.45 -2.39 -0.02 2.10 16 48 H 0.06 2.14 6.92 -2.39 -0.02 2.12 16 49 H 0.06 2.85 6.29 -2.39 -0.01 2.83 16 50 H 0.02 1.07 8.00 -2.39 -0.02 1.06 16 Total: -1.00 -65.59 356.98 3.36 -62.23 By element: Atomic # 1 Polarization: 35.91 SS G_CDS: 0.90 Total: 36.81 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: 4.27 Total: -14.48 kcal Atomic # 7 Polarization: -98.75 SS G_CDS: -3.64 Total: -102.38 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.05 Total: -24.57 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 1.87 Total: 42.39 kcal Total: -65.59 3.36 -62.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133705787.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.943 kcal (2) G-P(sol) polarization free energy of solvation -65.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds