Wall clock time and date at job start Tue Mar 31 2020 05:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47452 * 2 1 4 4 C 1.53006 * 109.46704 * 120.00171 * 2 1 3 5 5 S 1.81400 * 109.47493 * 65.00129 * 4 2 1 6 6 C 1.81394 * 102.99908 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.46986 * 179.97438 * 6 5 4 8 8 N 1.46503 * 109.47395 * 180.02562 * 7 6 5 9 9 N 1.40065 * 126.03812 * 90.01894 * 8 7 6 10 10 C 1.30825 * 108.34186 * 179.97438 * 9 8 7 11 11 C 1.50703 * 125.85900 * 179.73697 * 10 9 8 12 12 C 1.53005 * 109.47045 * 5.92500 * 11 10 9 13 13 C 1.52994 * 109.47083 * 125.92577 * 11 10 9 14 14 C 1.53000 * 109.47220 * 245.92838 * 11 10 9 15 15 C 1.39814 * 108.28639 * 0.02562 * 10 9 8 16 16 C 1.50699 * 126.08635 * 179.97438 * 15 10 9 17 17 C 1.50700 * 109.47257 * 95.63798 * 16 15 10 18 18 H 1.07999 * 120.00133 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00034 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00115 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99955 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47207 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46721 * 120.00402 * 21 19 17 24 24 H 1.48499 * 109.47182 * 240.00128 * 21 19 17 25 25 C 1.35130 * 126.03477 * 270.00193 * 8 7 6 26 26 O 1.35755 * 126.19189 * 359.97438 * 25 8 7 27 27 H 1.08998 * 109.47197 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46899 * 300.00247 * 1 2 3 29 29 H 1.08999 * 109.46554 * 60.00305 * 1 2 3 30 30 H 1.09001 * 109.47563 * 239.99634 * 2 1 3 31 31 H 1.08992 * 109.47391 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47411 * 300.00075 * 3 2 1 33 33 H 1.09003 * 109.46980 * 59.99854 * 3 2 1 34 34 H 1.08995 * 109.47279 * 304.99414 * 4 2 1 35 35 H 1.09004 * 109.47096 * 185.00039 * 4 2 1 36 36 H 1.09003 * 109.47171 * 60.00222 * 6 5 4 37 37 H 1.08996 * 109.47310 * 299.99692 * 6 5 4 38 38 H 1.08995 * 109.47116 * 60.00066 * 7 6 5 39 39 H 1.09003 * 109.46971 * 299.99666 * 7 6 5 40 40 H 1.09000 * 109.46580 * 60.00180 * 12 11 10 41 41 H 1.09002 * 109.46952 * 179.97438 * 12 11 10 42 42 H 1.09000 * 109.47003 * 300.00172 * 12 11 10 43 43 H 1.09001 * 109.47249 * 60.00179 * 13 11 10 44 44 H 1.09002 * 109.47326 * 180.02562 * 13 11 10 45 45 H 1.09001 * 109.47519 * 299.99848 * 13 11 10 46 46 H 1.08995 * 109.47606 * 64.46532 * 14 11 10 47 47 H 1.09003 * 109.46870 * 184.46802 * 14 11 10 48 48 H 1.09000 * 109.47227 * 304.46249 * 14 11 10 49 49 H 1.09003 * 109.47099 * 215.63941 * 16 15 10 50 50 H 1.08994 * 109.46925 * 335.63384 * 16 15 10 51 51 H 0.97000 * 120.00349 * 179.97438 * 20 19 17 52 52 H 0.96702 * 114.00315 * 90.02491 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 16 1.5601 -2.4692 1.1767 6 6 2.2429 -3.1441 2.7157 7 6 1.9173 -4.6363 2.8068 8 7 2.4683 -5.1813 4.0501 9 7 1.8104 -5.2444 5.2850 10 6 2.6187 -5.7941 6.1545 11 6 2.3116 -6.0477 7.6079 12 6 0.8485 -5.6987 7.8885 13 6 2.5547 -7.5234 7.9306 14 6 3.2196 -5.1786 8.4803 15 6 3.8188 -6.0998 5.5056 16 6 5.0279 -6.7443 6.1330 17 6 4.9910 -8.2302 5.8843 18 1 4.1736 -8.6645 5.3280 19 6 6.0009 -9.0353 6.3670 20 7 6.9961 -8.5066 7.0450 21 14 5.9548 -10.8772 6.0594 22 1 4.7389 -11.2183 5.2782 23 1 7.1627 -11.2819 5.2961 24 1 5.9266 -11.5956 7.3587 25 6 3.7008 -5.7123 4.2079 26 8 4.6493 -5.8369 3.2446 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6054 -0.2618 2.1370 35 1 3.1263 -0.6444 1.2953 36 1 1.8035 -2.6241 3.5669 37 1 3.3241 -3.0066 2.7245 38 1 2.3564 -5.1566 1.9557 39 1 0.8360 -4.7734 2.7983 40 1 0.2017 -6.3179 7.2670 41 1 0.6263 -5.8826 8.9397 42 1 0.6754 -4.6473 7.6586 43 1 3.5970 -7.7721 7.7307 44 1 2.3322 -7.7070 8.9817 45 1 1.9078 -8.1426 7.3091 46 1 2.9907 -4.1270 8.3081 47 1 3.0534 -5.4194 9.5303 48 1 4.2615 -5.3704 8.2241 49 1 5.9327 -6.3247 5.6932 50 1 5.0244 -6.5554 7.2064 51 1 7.7064 -9.0729 7.3849 52 1 5.2413 -5.0754 3.1747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133800943.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:02 Heat of formation + Delta-G solvation = 0.956101 kcal Electronic energy + Delta-G solvation = -27988.244179 eV Core-core repulsion = 24308.076251 eV Total energy + Delta-G solvation = -3680.167928 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.94009 -37.13983 -36.57172 -36.04786 -33.92355 -33.08044 -30.38221 -29.03158 -27.85273 -27.55141 -26.74328 -26.53259 -26.32888 -23.92375 -22.75759 -21.07652 -20.53340 -20.02700 -18.28644 -17.12409 -16.79086 -16.31672 -15.99756 -15.53070 -14.98336 -14.78219 -14.71232 -14.43631 -14.27837 -13.93441 -13.77720 -13.48090 -13.14474 -13.05183 -12.69356 -12.65179 -12.50259 -12.23754 -11.94940 -11.78094 -11.61011 -11.53703 -11.49098 -11.43310 -11.32127 -11.20044 -11.16336 -10.98821 -10.77075 -10.66744 -10.47817 -10.37622 -10.23198 -10.21727 -9.62706 -9.35323 -9.24229 -8.52206 -8.31567 -7.92741 -7.41681 -5.95041 -3.95325 1.21196 2.23401 2.30429 2.91749 3.34340 3.40351 3.43693 3.51483 4.28039 4.39370 4.42429 4.52854 4.58977 4.66357 4.72589 4.99289 5.02474 5.13407 5.18640 5.23550 5.25963 5.31572 5.38787 5.44060 5.45907 5.52725 5.55228 5.64749 5.68260 5.82141 5.86131 5.94001 6.01115 6.14097 6.23559 6.30473 6.36967 6.42760 6.54562 6.61150 6.65710 6.85045 6.89983 7.08593 7.32242 7.39651 7.69701 7.79672 8.02038 8.14732 8.33773 8.47281 9.08385 9.66359 11.14025 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014495 B = 0.002593 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.224959 B =10795.828361 C =11863.436832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.080 4.080 3 C -0.144 4.144 4 C -0.081 4.081 5 S -0.245 6.245 6 C -0.105 4.105 7 C 0.158 3.842 8 N -0.395 5.395 9 N -0.290 5.290 10 C 0.099 3.901 11 C 0.020 3.980 12 C -0.133 4.133 13 C -0.153 4.153 14 C -0.141 4.141 15 C -0.177 4.177 16 C 0.087 3.913 17 C -0.492 4.492 18 H 0.053 0.947 19 C 0.057 3.943 20 N -0.897 5.897 21 Si 0.886 3.114 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.284 1.284 25 C 0.229 3.771 26 O -0.455 6.455 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.107 0.893 44 H 0.047 0.953 45 H 0.047 0.953 46 H 0.046 0.954 47 H 0.057 0.943 48 H 0.074 0.926 49 H 0.019 0.981 50 H 0.037 0.963 51 H 0.259 0.741 52 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.235 17.326 -8.433 21.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.100 4.100 3 C -0.203 4.203 4 C -0.229 4.229 5 S -0.018 6.018 6 C -0.254 4.254 7 C 0.035 3.965 8 N -0.190 5.190 9 N -0.115 5.115 10 C -0.067 4.067 11 C 0.018 3.982 12 C -0.190 4.190 13 C -0.210 4.210 14 C -0.199 4.199 15 C -0.188 4.188 16 C 0.050 3.950 17 C -0.530 4.530 18 H 0.071 0.929 19 C -0.143 4.143 20 N -0.537 5.537 21 Si 0.715 3.285 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.211 1.211 25 C 0.064 3.936 26 O -0.256 6.256 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.125 0.875 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.076 0.924 48 H 0.093 0.907 49 H 0.038 0.962 50 H 0.055 0.945 51 H 0.069 0.931 52 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -11.990 16.704 -9.618 22.700 hybrid contribution 1.821 -0.255 0.682 1.961 sum -10.168 16.449 -8.936 21.303 Atomic orbital electron populations 1.21916 0.94288 1.02816 1.01803 1.20896 0.96746 0.95836 0.96496 1.21846 1.01166 0.95073 1.02232 1.23533 1.03739 0.93437 1.02235 1.86739 1.75886 1.09221 1.29952 1.23828 1.03796 0.99637 0.98150 1.21015 1.01103 0.90350 0.84068 1.48750 1.11752 1.50100 1.08365 1.77229 1.20304 1.25563 0.88381 1.21918 0.92056 0.97107 0.95620 1.18894 0.95217 0.97276 0.86814 1.21783 0.95344 1.01340 1.00544 1.22140 1.06597 0.92743 0.99553 1.21939 1.01073 0.98234 0.98610 1.20612 0.99887 1.07308 0.91040 1.17773 0.87632 0.94160 0.95484 1.21078 1.06977 0.91489 1.33467 0.92880 1.24949 0.95529 0.98315 0.95506 1.69949 1.11258 1.35137 1.37309 0.86612 0.77945 0.86083 0.77900 1.19825 1.21168 1.21051 1.18530 0.83583 1.02230 0.89236 1.84950 1.42390 1.43883 1.54361 0.91433 0.92540 0.92518 0.90212 0.92447 0.92021 0.92447 0.90017 0.90022 0.89243 0.89981 0.88472 0.88473 0.92764 0.92913 0.92887 0.87464 0.93401 0.93402 0.93495 0.92392 0.90702 0.96247 0.94463 0.93126 0.76390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.02 37.16 0.34 -0.71 16 2 C -0.08 -0.56 2.92 -90.62 -0.26 -0.82 16 3 C -0.14 -0.81 9.19 37.15 0.34 -0.47 16 4 C -0.08 -0.65 5.38 37.16 0.20 -0.45 16 5 S -0.24 -2.50 20.55 -107.50 -2.21 -4.70 16 6 C -0.10 -1.19 6.26 37.16 0.23 -0.96 16 7 C 0.16 2.16 6.40 -4.04 -0.03 2.13 16 8 N -0.39 -7.00 3.62 -61.48 -0.22 -7.23 16 9 N -0.29 -5.55 11.86 33.66 0.40 -5.15 16 10 C 0.10 1.97 5.61 -82.43 -0.46 1.51 16 11 C 0.02 0.36 0.75 -155.66 -0.12 0.24 16 12 C -0.13 -2.02 7.96 37.16 0.30 -1.72 16 13 C -0.15 -2.90 8.25 37.15 0.31 -2.59 16 14 C -0.14 -2.30 8.36 37.16 0.31 -1.99 16 15 C -0.18 -3.88 5.11 -104.85 -0.54 -4.42 16 16 C 0.09 2.17 4.42 -29.04 -0.13 2.04 16 17 C -0.49 -13.46 7.49 -34.44 -0.26 -13.72 16 18 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 20 N -0.90 -25.81 13.29 55.43 0.74 -25.07 16 21 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 22 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 C 0.23 4.56 7.92 -16.92 -0.13 4.43 16 26 O -0.46 -8.32 13.53 -18.98 -0.26 -8.57 16 27 H 0.07 0.55 7.14 -51.93 -0.37 0.18 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 36 H 0.09 1.08 8.14 -51.92 -0.42 0.65 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.11 2.41 4.19 -51.93 -0.22 2.19 16 44 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.07 1.37 5.65 -51.93 -0.29 1.08 16 49 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 50 H 0.04 0.94 4.58 -51.93 -0.24 0.70 16 51 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 52 H 0.38 5.02 9.06 45.56 0.41 5.43 16 LS Contribution 423.69 15.07 6.38 6.38 Total: -1.00 -30.95 423.69 -8.89 -39.84 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -8.70 Total: 3.85 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: 0.00 Total: -15.99 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.91 Total: -37.45 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.26 Total: -8.57 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -2.50 SS G_CDS: -2.21 Total: -4.70 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -30.95 -8.89 -39.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133800943.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.792 kcal (2) G-P(sol) polarization free energy of solvation -30.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds