Wall clock time and date at job start Tue Mar 31 2020 06:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47133 * 2 1 4 4 H 1.09007 * 109.46945 * 55.00404 * 3 2 1 5 5 C 1.50697 * 109.47067 * 174.99679 * 3 2 1 6 6 H 1.08009 * 119.99639 * 119.72661 * 5 3 2 7 7 C 1.37878 * 120.00576 * 300.00448 * 5 3 2 8 8 N 1.31510 * 120.00294 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99629 * 359.97438 * 7 5 3 10 10 H 1.48495 * 109.47006 * 90.00119 * 9 7 5 11 11 H 1.48501 * 109.47295 * 210.00078 * 9 7 5 12 12 H 1.48498 * 109.47463 * 329.99853 * 9 7 5 13 13 N 1.46497 * 109.47053 * 295.00399 * 3 2 1 14 14 C 1.34777 * 120.00261 * 84.99930 * 13 3 2 15 15 O 1.21592 * 120.00003 * 359.97438 * 14 13 3 16 16 N 1.34778 * 119.99864 * 179.97438 * 14 13 3 17 17 C 1.39943 * 119.99884 * 175.58725 * 16 14 13 18 18 C 1.38929 * 120.03995 * 35.14476 * 17 16 14 19 19 C 1.38132 * 120.04042 * 180.02562 * 18 17 16 20 20 C 1.38197 * 120.12843 * 0.02562 * 19 18 17 21 21 C 1.38790 * 120.08266 * 359.97438 * 20 19 18 22 22 O 1.35891 * 120.02201 * 180.02562 * 21 20 19 23 23 C 1.35729 * 118.00059 * 255.42699 * 22 21 20 24 24 C 1.39290 * 120.84937 * 354.87106 * 23 22 21 25 25 C 1.37969 * 119.09056 * 179.70399 * 24 23 22 26 26 N 1.31966 * 120.81948 * 0.58189 * 25 24 23 27 27 C 1.31964 * 121.87179 * 359.70947 * 26 25 24 28 28 C 1.37967 * 120.82366 * 359.97438 * 27 26 25 29 29 C 1.38643 * 119.95374 * 359.76812 * 21 20 19 30 30 H 1.08997 * 109.47622 * 299.99728 * 1 2 3 31 31 H 1.09003 * 109.47139 * 60.00019 * 1 2 3 32 32 H 1.09004 * 109.47366 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47068 * 240.00776 * 2 1 3 34 34 H 1.08994 * 109.47358 * 120.00008 * 2 1 3 35 35 H 0.96997 * 120.00295 * 180.02562 * 8 7 5 36 36 H 0.96998 * 119.99665 * 264.99400 * 13 3 2 37 37 H 0.97004 * 120.00019 * 355.58050 * 16 14 13 38 38 H 1.08000 * 119.98045 * 359.97438 * 18 17 16 39 39 H 1.08001 * 119.93315 * 180.02562 * 19 18 17 40 40 H 1.08004 * 119.96359 * 180.02562 * 20 19 18 41 41 H 1.08001 * 120.45183 * 359.97438 * 24 23 22 42 42 H 1.07999 * 119.59051 * 180.29286 * 25 24 23 43 43 H 1.08001 * 119.58221 * 180.02562 * 27 26 25 44 44 H 1.08004 * 120.45210 * 179.97438 * 28 27 26 45 45 H 1.07997 * 120.06817 * 180.27202 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8419 5 6 3.5418 1.4443 0.1239 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8784 1.2280 8 7 5.4539 0.8804 1.3363 9 14 3.0963 0.1100 2.5707 10 1 2.8744 -1.3260 2.2645 11 1 3.7940 0.2358 3.8755 12 1 1.7881 0.8093 2.6396 13 7 1.6523 2.0975 -1.2517 14 6 0.4350 2.6644 -1.3669 15 8 -0.3417 2.6318 -0.4319 16 7 0.0786 3.2674 -2.5183 17 6 -1.2167 3.7746 -2.6708 18 6 -1.8772 4.3335 -1.5839 19 6 -3.1560 4.8336 -1.7342 20 6 -3.7818 4.7791 -2.9652 21 6 -3.1269 4.2219 -4.0545 22 8 -3.7432 4.1694 -5.2645 23 6 -4.2271 2.9719 -5.6817 24 6 -4.0020 1.8136 -4.9417 25 6 -4.5158 0.6166 -5.3964 26 7 -5.2024 0.5596 -6.5219 27 6 -5.4315 1.6337 -7.2535 28 6 -4.9568 2.8690 -6.8636 29 6 -1.8413 3.7238 -3.9087 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 5.8770 0.4819 2.1129 36 1 2.2718 2.1232 -1.9977 37 1 0.7201 3.3500 -3.2413 38 1 -1.3909 4.3762 -0.6205 39 1 -3.6677 5.2681 -0.8882 40 1 -4.7816 5.1713 -3.0798 41 1 -3.4367 1.8526 -4.0222 42 1 -4.3502 -0.2857 -4.8265 43 1 -5.9984 1.5446 -8.1684 44 1 -5.1475 3.7441 -7.4672 45 1 -1.3282 3.2938 -4.7562 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157437539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:34 Heat of formation + Delta-G solvation = 17.951638 kcal Electronic energy + Delta-G solvation = -28870.533634 eV Core-core repulsion = 24854.399731 eV Total energy + Delta-G solvation = -4016.133903 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.44514 -40.39269 -39.37633 -37.90952 -35.71837 -34.41370 -32.51671 -32.03485 -31.63903 -31.50593 -30.38575 -29.23486 -27.42606 -24.48788 -23.81444 -23.22234 -22.61782 -22.43370 -21.02276 -19.97548 -19.15351 -18.52229 -17.72200 -16.75033 -16.51669 -16.36650 -16.15868 -15.99414 -15.54074 -15.24780 -14.88962 -14.70468 -14.37113 -14.16936 -13.99415 -13.82688 -13.56428 -13.33271 -13.04609 -12.82671 -12.43816 -12.21214 -12.04666 -11.87336 -11.66801 -11.52324 -11.17160 -10.97051 -10.70087 -10.38655 -9.98130 -9.87507 -9.75926 -9.55644 -9.49591 -9.33876 -9.28940 -8.94033 -8.83561 -8.36448 -8.04531 -6.27442 -4.30728 0.77700 0.86342 1.02204 1.09208 2.61602 2.98119 3.18970 3.31382 3.35307 3.37035 3.50896 3.73980 4.16413 4.25553 4.38018 4.55280 4.61409 4.70362 4.84740 4.86172 4.96219 5.06130 5.07617 5.25616 5.39063 5.40884 5.45233 5.57810 5.74954 5.91149 5.97430 5.98579 6.09762 6.16398 6.18709 6.29533 6.38843 6.55861 6.63813 6.72945 6.79854 6.87980 7.02000 7.17856 7.20434 7.36673 7.43232 7.69004 8.17229 8.48383 8.70194 8.93510 9.32735 10.84478 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017488 B = 0.002519 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.717122 B =11114.756479 C =11807.163846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.140 4.140 3 C 0.260 3.740 4 H 0.051 0.949 5 C -0.537 4.537 6 H 0.080 0.920 7 C 0.080 3.920 8 N -0.891 5.891 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.259 1.259 13 N -0.709 5.709 14 C 0.696 3.304 15 O -0.576 6.576 16 N -0.695 5.695 17 C 0.197 3.803 18 C -0.114 4.114 19 C -0.086 4.086 20 C -0.142 4.142 21 C 0.089 3.911 22 O -0.250 6.250 23 C 0.165 3.835 24 C -0.246 4.246 25 C 0.135 3.865 26 N -0.508 5.508 27 C 0.129 3.871 28 C -0.203 4.203 29 C -0.169 4.169 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.030 0.970 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.268 0.732 36 H 0.393 0.607 37 H 0.406 0.594 38 H 0.152 0.848 39 H 0.134 0.866 40 H 0.129 0.871 41 H 0.144 0.856 42 H 0.160 0.840 43 H 0.163 0.837 44 H 0.143 0.857 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.024 5.717 -14.098 24.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.179 4.179 3 C 0.156 3.844 4 H 0.069 0.931 5 C -0.575 4.575 6 H 0.098 0.902 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.713 3.287 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.359 5.359 14 C 0.396 3.604 15 O -0.454 6.454 16 N -0.343 5.343 17 C 0.100 3.900 18 C -0.135 4.135 19 C -0.104 4.104 20 C -0.161 4.161 21 C 0.047 3.953 22 O -0.160 6.160 23 C 0.114 3.886 24 C -0.266 4.266 25 C -0.021 4.021 26 N -0.220 5.220 27 C -0.027 4.027 28 C -0.224 4.224 29 C -0.190 4.190 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.226 0.774 37 H 0.241 0.759 38 H 0.169 0.831 39 H 0.152 0.848 40 H 0.147 0.853 41 H 0.161 0.839 42 H 0.177 0.823 43 H 0.180 0.820 44 H 0.161 0.839 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -19.760 4.959 -13.425 24.398 hybrid contribution 0.774 0.290 0.352 0.898 sum -18.986 5.249 -13.073 23.642 Atomic orbital electron populations 1.21848 0.96839 0.98970 1.02240 1.22314 0.94453 0.99977 1.01155 1.19095 0.95505 0.88223 0.81573 0.93126 1.21020 0.88486 1.40181 1.07856 0.90191 1.24818 0.94881 0.95080 0.97661 1.69856 1.08703 1.44280 1.29866 0.86903 0.80950 0.79994 0.80898 1.20195 1.22120 1.18388 1.45470 1.13389 1.58187 1.18893 1.16042 0.83562 0.78604 0.82179 1.90891 1.51822 1.64783 1.37909 1.42822 1.11920 1.61110 1.18400 1.17262 0.85146 0.94289 0.93264 1.21615 0.95508 0.96155 1.00189 1.20964 0.94594 0.98368 0.96501 1.21121 1.00675 1.03001 0.91347 1.18218 0.91062 1.02178 0.83827 1.84380 1.69627 1.28556 1.33389 1.19542 0.91456 0.84374 0.93248 1.22443 1.06912 0.93527 1.03767 1.22644 0.90847 0.96974 0.91646 1.67741 1.15658 1.32081 1.06565 1.22650 0.95040 0.86823 0.98176 1.21512 1.03097 1.00739 0.97035 1.21065 0.95039 1.05036 0.97877 0.92823 0.93042 0.95053 0.92321 0.92671 0.92187 0.77362 0.75877 0.83061 0.84768 0.85260 0.83856 0.82319 0.81994 0.83935 0.85092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 8.51 37.15 0.32 -2.43 16 2 C -0.14 -2.99 5.11 -26.73 -0.14 -3.12 16 3 C 0.26 5.82 1.83 -69.08 -0.13 5.69 16 4 H 0.05 1.26 6.63 -51.93 -0.34 0.91 16 5 C -0.54 -13.92 9.31 -34.44 -0.32 -14.24 16 6 H 0.08 2.18 7.98 -52.48 -0.42 1.76 16 7 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 8 N -0.89 -25.74 13.96 55.43 0.77 -24.97 16 9 Si 0.88 21.11 24.41 -169.99 -4.15 16.96 16 10 H -0.28 -6.40 6.83 56.52 0.39 -6.01 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.26 -6.11 6.53 56.52 0.37 -5.74 16 13 N -0.71 -12.90 5.03 -59.81 -0.30 -13.20 16 14 C 0.70 11.94 6.97 -86.92 -0.61 11.33 16 15 O -0.58 -11.47 10.92 5.29 0.06 -11.41 16 16 N -0.69 -9.06 5.34 -14.24 -0.08 -9.14 16 17 C 0.20 2.51 6.29 -83.71 -0.53 1.99 16 18 C -0.11 -1.50 8.69 -39.36 -0.34 -1.84 16 19 C -0.09 -0.92 10.03 -39.64 -0.40 -1.31 16 20 C -0.14 -1.47 9.98 -39.39 -0.39 -1.86 16 21 C 0.09 1.00 4.71 -39.23 -0.18 0.81 16 22 O -0.25 -2.78 10.00 -3.06 -0.03 -2.81 16 23 C 0.17 1.74 6.67 -38.80 -0.26 1.48 16 24 C -0.25 -2.60 9.01 -39.29 -0.35 -2.96 16 25 C 0.13 1.38 11.17 -17.59 -0.20 1.18 16 26 N -0.51 -5.44 10.36 -13.33 -0.14 -5.58 16 27 C 0.13 1.11 11.17 -17.59 -0.20 0.91 16 28 C -0.20 -1.77 10.08 -39.29 -0.40 -2.17 16 29 C -0.17 -1.89 8.43 -39.24 -0.33 -2.22 16 30 H 0.05 1.10 7.84 -51.93 -0.41 0.69 16 31 H 0.05 0.98 5.64 -51.93 -0.29 0.69 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.06 1.25 3.22 -51.93 -0.17 1.08 16 35 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.39 6.24 8.56 -40.82 -0.35 5.89 16 37 H 0.41 4.08 8.84 -40.82 -0.36 3.72 16 38 H 0.15 2.30 6.23 -52.49 -0.33 1.97 16 39 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 41 H 0.14 1.58 6.18 -52.49 -0.32 1.25 16 42 H 0.16 1.31 8.06 -52.49 -0.42 0.88 16 43 H 0.16 0.87 8.06 -52.49 -0.42 0.44 16 44 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 45 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 367.96 15.07 5.55 5.55 Total: -1.00 -31.33 367.96 -8.42 -39.75 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -5.56 Total: 11.54 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -4.55 Total: -6.69 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: 0.26 Total: -52.89 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: 0.03 Total: -14.22 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.15 Total: 16.96 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.33 -8.42 -39.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157437539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.703 kcal (2) G-P(sol) polarization free energy of solvation -31.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds