Wall clock time and date at job start Tue Mar 31 2020 06:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47115 * 2 1 4 4 H 1.09003 * 109.47294 * 304.99909 * 3 2 1 5 5 C 1.50703 * 109.47167 * 185.00077 * 3 2 1 6 6 H 1.08001 * 120.00184 * 239.99681 * 5 3 2 7 7 C 1.37877 * 119.99844 * 60.00115 * 5 3 2 8 8 N 1.31520 * 120.00169 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 120.00068 * 359.97438 * 7 5 3 10 10 H 1.48504 * 109.47445 * 270.00200 * 9 7 5 11 11 H 1.48502 * 109.47306 * 30.00421 * 9 7 5 12 12 H 1.48503 * 109.47126 * 150.00250 * 9 7 5 13 13 N 1.46497 * 109.47405 * 65.00393 * 3 2 1 14 14 C 1.34783 * 119.99609 * 275.00052 * 13 3 2 15 15 O 1.21588 * 119.99943 * 359.97438 * 14 13 3 16 16 N 1.34777 * 119.99958 * 179.97438 * 14 13 3 17 17 C 1.39938 * 120.00229 * 173.97327 * 16 14 13 18 18 C 1.38929 * 120.04088 * 333.77143 * 17 16 14 19 19 C 1.38128 * 120.04376 * 179.97438 * 18 17 16 20 20 C 1.38204 * 120.12828 * 359.97438 * 19 18 17 21 21 C 1.38782 * 120.07892 * 359.97438 * 20 19 18 22 22 O 1.35896 * 120.02109 * 180.02562 * 21 20 19 23 23 C 1.35736 * 117.99765 * 255.32147 * 22 21 20 24 24 C 1.39288 * 120.84880 * 354.82805 * 23 22 21 25 25 C 1.37969 * 119.08869 * 179.71023 * 24 23 22 26 26 N 1.31964 * 120.82234 * 0.57752 * 25 24 23 27 27 C 1.31966 * 121.86718 * 359.71511 * 26 25 24 28 28 C 1.37963 * 120.82760 * 359.97438 * 27 26 25 29 29 C 1.38651 * 119.95618 * 359.77015 * 21 20 19 30 30 H 1.08997 * 109.47232 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46769 * 299.99752 * 1 2 3 32 32 H 1.08994 * 109.47337 * 60.00254 * 1 2 3 33 33 H 1.09008 * 109.47095 * 239.99724 * 2 1 3 34 34 H 1.09003 * 109.47209 * 120.00046 * 2 1 3 35 35 H 0.97001 * 120.00007 * 179.97438 * 8 7 5 36 36 H 0.96999 * 120.00407 * 95.00171 * 13 3 2 37 37 H 0.97003 * 119.99616 * 353.97964 * 16 14 13 38 38 H 1.08005 * 119.97678 * 359.97438 * 18 17 16 39 39 H 1.07996 * 119.93244 * 180.02562 * 19 18 17 40 40 H 1.07996 * 119.95851 * 179.97438 * 20 19 18 41 41 H 1.08004 * 120.45737 * 359.97438 * 24 23 22 42 42 H 1.07995 * 119.58943 * 180.29103 * 25 24 23 43 43 H 1.08007 * 119.58800 * 179.97438 * 27 26 25 44 44 H 1.08000 * 120.45886 * 179.97438 * 28 27 26 45 45 H 1.08002 * 120.06173 * 180.27992 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8784 -1.2280 8 7 5.4540 0.8795 -1.3359 9 14 3.0963 0.1088 -2.5701 10 1 2.8754 -1.3273 -2.2634 11 1 1.7876 0.8073 -2.6387 12 1 3.7935 0.2347 -3.8752 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3412 2.6326 0.4317 16 7 0.0784 3.2665 2.5188 17 6 -1.1323 3.9637 2.5981 18 6 -1.6975 4.5086 1.4519 19 6 -2.8929 5.1963 1.5300 20 6 -3.5300 5.3439 2.7476 21 6 -2.9705 4.8008 3.8957 22 8 -3.5983 4.9462 5.0922 23 6 -3.0903 5.8452 5.9732 24 6 -1.9003 6.5166 5.7024 25 6 -1.4200 7.4274 6.6207 26 7 -2.0672 7.6566 7.7476 27 6 -3.1941 7.0363 8.0425 28 6 -3.7427 6.1158 7.1736 29 6 -1.7735 4.1053 3.8203 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 5.8770 0.4810 -2.1126 36 1 2.2720 2.1232 1.9977 37 1 0.6611 3.2167 3.2927 38 1 -1.2019 4.3943 0.4991 39 1 -3.3308 5.6188 0.6378 40 1 -4.4642 5.8825 2.8056 41 1 -1.3631 6.3299 4.7842 42 1 -0.5006 7.9559 6.4168 43 1 -3.6930 7.2519 8.9759 44 1 -4.6650 5.6113 7.4211 45 1 -1.3389 3.6781 4.7120 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157437684.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:37 Heat of formation + Delta-G solvation = 18.837612 kcal Electronic energy + Delta-G solvation = -28624.608618 eV Core-core repulsion = 24608.513133 eV Total energy + Delta-G solvation = -4016.095484 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.46121 -40.43857 -39.39607 -37.90895 -35.73171 -34.44842 -32.52941 -32.05191 -31.65334 -31.53540 -30.38083 -29.23766 -27.43070 -24.51111 -23.84285 -23.22840 -22.64458 -22.45326 -21.02401 -19.98845 -19.16864 -18.52849 -17.75248 -16.77353 -16.52347 -16.37683 -16.06714 -16.02438 -15.60956 -15.33409 -14.77169 -14.72052 -14.44507 -14.16415 -14.00170 -13.82742 -13.55876 -13.41036 -13.08400 -12.79148 -12.46201 -12.18451 -12.04411 -11.88999 -11.75338 -11.57347 -11.16736 -10.96917 -10.70132 -10.44995 -9.98689 -9.90900 -9.73859 -9.59423 -9.48073 -9.38657 -9.30017 -8.93134 -8.83912 -8.34014 -8.01399 -6.28019 -4.31380 0.74204 0.85966 1.00424 1.11598 2.66462 2.89531 3.18506 3.30977 3.34983 3.36135 3.47922 3.75571 4.12602 4.24965 4.35310 4.52218 4.56832 4.70686 4.82310 4.86861 4.94299 5.05512 5.08713 5.26755 5.37050 5.40270 5.41949 5.56440 5.71376 5.90609 5.96960 5.98907 6.09273 6.14437 6.17934 6.29314 6.39359 6.55373 6.63696 6.72579 6.79321 6.87447 7.01491 7.17914 7.19084 7.35771 7.42177 7.65332 8.15996 8.46603 8.69404 8.90960 9.32020 10.83839 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021612 B = 0.002267 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.286593 B =12348.752505 C =12994.929837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.141 4.141 3 C 0.259 3.741 4 H 0.051 0.949 5 C -0.537 4.537 6 H 0.080 0.920 7 C 0.080 3.920 8 N -0.890 5.890 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.259 1.259 12 H -0.294 1.294 13 N -0.708 5.708 14 C 0.695 3.305 15 O -0.574 6.574 16 N -0.691 5.691 17 C 0.202 3.798 18 C -0.123 4.123 19 C -0.083 4.083 20 C -0.146 4.146 21 C 0.093 3.907 22 O -0.249 6.249 23 C 0.166 3.834 24 C -0.248 4.248 25 C 0.134 3.866 26 N -0.509 5.509 27 C 0.130 3.870 28 C -0.203 4.203 29 C -0.176 4.176 30 H 0.031 0.969 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.268 0.732 36 H 0.393 0.607 37 H 0.406 0.594 38 H 0.157 0.843 39 H 0.134 0.866 40 H 0.129 0.871 41 H 0.143 0.857 42 H 0.159 0.841 43 H 0.163 0.837 44 H 0.143 0.857 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.867 10.169 14.412 24.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.179 4.179 3 C 0.156 3.844 4 H 0.069 0.931 5 C -0.575 4.575 6 H 0.098 0.902 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.713 3.287 10 H -0.202 1.202 11 H -0.184 1.184 12 H -0.221 1.221 13 N -0.359 5.359 14 C 0.395 3.605 15 O -0.452 6.452 16 N -0.338 5.338 17 C 0.104 3.896 18 C -0.143 4.143 19 C -0.101 4.101 20 C -0.165 4.165 21 C 0.050 3.950 22 O -0.159 6.159 23 C 0.115 3.885 24 C -0.268 4.268 25 C -0.022 4.022 26 N -0.221 5.221 27 C -0.026 4.026 28 C -0.224 4.224 29 C -0.198 4.198 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.227 0.773 37 H 0.241 0.759 38 H 0.174 0.826 39 H 0.152 0.848 40 H 0.147 0.853 41 H 0.161 0.839 42 H 0.177 0.823 43 H 0.180 0.820 44 H 0.161 0.839 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.105 10.468 13.956 24.432 hybrid contribution -0.014 -1.338 -0.633 1.481 sum -17.119 9.129 13.323 23.535 Atomic orbital electron populations 1.21852 0.96821 0.99018 1.02264 1.22321 0.94453 0.99972 1.01179 1.19107 0.95548 0.88235 0.81542 0.93098 1.21011 0.88455 1.40103 1.07966 0.90170 1.24821 0.94888 0.95080 0.97659 1.69862 1.08689 1.44268 1.29852 0.86904 0.80945 0.79994 0.80902 1.20205 1.18393 1.22101 1.45495 1.13083 1.58387 1.18889 1.16050 0.83496 0.78646 0.82264 1.90875 1.51629 1.64323 1.38349 1.42862 1.20699 1.55192 1.15015 1.17301 0.86421 0.92464 0.93403 1.21690 0.96722 0.96278 0.99646 1.20967 0.94602 0.97567 0.96992 1.21110 1.01691 1.01862 0.91868 1.18207 0.93231 0.99999 0.83518 1.84401 1.52396 1.55016 1.24069 1.19561 0.91726 0.87722 0.89508 1.22413 0.98108 1.02301 1.04000 1.22631 0.98236 0.93161 0.88164 1.67738 1.08773 1.26040 1.19576 1.22648 0.91130 0.90563 0.98259 1.21525 1.03524 1.03564 0.93773 1.20938 0.95988 1.04885 0.98005 0.95029 0.93036 0.92797 0.92650 0.92307 0.92182 0.77328 0.75902 0.82603 0.84773 0.85295 0.83903 0.82339 0.81994 0.83925 0.85126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 8.51 37.16 0.32 -2.46 16 2 C -0.14 -2.99 5.11 -26.73 -0.14 -3.13 16 3 C 0.26 5.80 1.83 -69.08 -0.13 5.67 16 4 H 0.05 1.26 6.63 -51.93 -0.34 0.92 16 5 C -0.54 -13.88 9.31 -34.44 -0.32 -14.20 16 6 H 0.08 2.18 7.98 -52.49 -0.42 1.76 16 7 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 8 N -0.89 -25.67 13.96 55.43 0.77 -24.90 16 9 Si 0.88 21.07 24.41 -169.99 -4.15 16.92 16 10 H -0.28 -6.39 6.83 56.52 0.39 -6.01 16 11 H -0.26 -6.10 6.53 56.52 0.37 -5.73 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 N -0.71 -12.85 5.03 -59.81 -0.30 -13.15 16 14 C 0.69 11.94 6.91 -86.91 -0.60 11.33 16 15 O -0.57 -11.46 10.74 5.29 0.06 -11.40 16 16 N -0.69 -9.02 5.37 -14.24 -0.08 -9.09 16 17 C 0.20 2.59 6.40 -83.72 -0.54 2.05 16 18 C -0.12 -1.64 8.70 -39.37 -0.34 -1.99 16 19 C -0.08 -0.90 10.03 -39.63 -0.40 -1.30 16 20 C -0.15 -1.53 9.98 -39.39 -0.39 -1.92 16 21 C 0.09 1.04 4.71 -39.23 -0.18 0.85 16 22 O -0.25 -2.78 10.00 -3.10 -0.03 -2.81 16 23 C 0.17 1.67 6.67 -38.80 -0.26 1.42 16 24 C -0.25 -2.34 9.01 -39.29 -0.35 -2.70 16 25 C 0.13 1.21 11.17 -17.59 -0.20 1.02 16 26 N -0.51 -5.06 10.36 -13.33 -0.14 -5.19 16 27 C 0.13 1.05 11.17 -17.59 -0.20 0.85 16 28 C -0.20 -1.70 10.08 -39.29 -0.40 -2.10 16 29 C -0.18 -1.98 8.39 -39.24 -0.33 -2.31 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.99 5.65 -51.93 -0.29 0.70 16 32 H 0.05 1.11 7.84 -51.93 -0.41 0.70 16 33 H 0.06 1.25 3.21 -51.92 -0.17 1.08 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.39 6.20 8.56 -40.82 -0.35 5.86 16 37 H 0.41 4.02 8.81 -40.82 -0.36 3.66 16 38 H 0.16 2.43 5.90 -52.48 -0.31 2.12 16 39 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 41 H 0.14 1.32 6.17 -52.48 -0.32 0.99 16 42 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.16 0.80 8.06 -52.48 -0.42 0.38 16 44 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 45 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 367.48 15.07 5.54 5.54 Total: -1.00 -31.40 367.48 -8.42 -39.82 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -5.54 Total: 11.10 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -4.55 Total: -6.83 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: 0.26 Total: -52.33 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.03 Total: -14.21 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.15 Total: 16.92 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.40 -8.42 -39.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157437684.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.657 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds