Wall clock time and date at job start Tue Mar 31 2020 06:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47157 * 2 1 4 4 C 1.50700 * 109.47329 * 120.00287 * 2 1 3 5 5 H 1.08007 * 120.00054 * 120.00302 * 4 2 1 6 6 C 1.37878 * 119.99957 * 299.99913 * 4 2 1 7 7 N 1.31509 * 120.00160 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99945 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47152 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47257 * 300.00302 * 8 6 4 11 11 H 1.48508 * 109.46841 * 60.00277 * 8 6 4 12 12 N 1.46498 * 109.47320 * 240.00402 * 2 1 3 13 13 C 1.34778 * 119.99963 * 84.99976 * 12 2 1 14 14 O 1.21587 * 120.00135 * 359.97438 * 13 12 2 15 15 N 1.34781 * 119.99798 * 180.02562 * 13 12 2 16 16 C 1.40163 * 119.99656 * 175.37559 * 15 13 12 17 17 C 1.38833 * 120.01125 * 214.81393 * 16 15 13 18 18 C 1.38098 * 119.98153 * 179.79661 * 17 16 15 19 19 C 1.38713 * 120.01554 * 0.47988 * 18 17 16 20 20 O 1.35981 * 119.98761 * 179.72686 * 19 18 17 21 21 C 1.42899 * 116.99640 * 0.02562 * 20 19 18 22 22 C 1.50693 * 109.46759 * 179.97438 * 21 20 19 23 23 C 1.38685 * 120.42095 * 269.72332 * 22 21 20 24 24 C 1.38622 * 118.41830 * 179.78591 * 23 22 21 25 25 C 1.38229 * 119.16439 * 0.51002 * 24 23 22 26 26 N 1.31855 * 120.76494 * 359.72952 * 25 24 23 27 27 C 1.31882 * 121.72173 * 359.97438 * 26 25 24 28 28 C 1.38717 * 120.02770 * 359.74863 * 19 18 17 29 29 C 1.38099 * 120.01290 * 0.02562 * 28 19 18 30 30 H 1.09000 * 109.47316 * 59.99754 * 1 2 3 31 31 H 1.09005 * 109.46457 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47214 * 299.99339 * 1 2 3 33 33 H 0.96996 * 120.00693 * 179.97438 * 7 6 4 34 34 H 0.96998 * 120.00502 * 264.99813 * 12 2 1 35 35 H 0.96992 * 120.00370 * 355.37762 * 15 13 12 36 36 H 1.07997 * 120.00865 * 0.02562 * 17 16 15 37 37 H 1.07997 * 119.99318 * 180.23257 * 18 17 16 38 38 H 1.08988 * 109.47328 * 300.00006 * 21 20 19 39 39 H 1.09001 * 109.46940 * 60.00416 * 21 20 19 40 40 H 1.07994 * 120.78666 * 0.02562 * 23 22 21 41 41 H 1.08002 * 120.41990 * 180.22059 * 24 23 22 42 42 H 1.08001 * 119.61739 * 179.75143 * 25 24 23 43 43 H 1.08000 * 119.61843 * 180.02562 * 27 26 25 44 44 H 1.07995 * 119.99378 * 179.97438 * 28 19 18 45 45 H 1.08002 * 120.00184 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6534 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8295 2.6035 8 14 2.3215 -1.1205 4.0079 9 1 1.8261 -0.4209 5.2204 10 1 1.8260 -2.5205 4.0076 11 1 3.8065 -1.1210 4.0080 12 7 2.0184 -0.6905 -1.1962 13 6 2.1471 -0.0181 -2.3571 14 8 1.8575 1.1615 -2.4118 15 7 2.5959 -0.6535 -3.4577 16 6 2.6382 0.0189 -4.6868 17 6 2.3834 -0.6705 -5.8646 18 6 2.4210 -0.0065 -7.0749 19 6 2.7231 1.3467 -7.1148 20 8 2.7655 1.9987 -8.3074 21 6 2.4879 1.2281 -9.4783 22 6 2.5801 2.1123 -10.6950 23 6 1.4595 2.7824 -11.1626 24 6 1.5923 3.5883 -12.2826 25 6 2.8260 3.6883 -12.8981 26 7 3.8691 3.0326 -12.4285 27 6 3.7810 2.2616 -11.3622 28 6 2.9825 2.0350 -5.9388 29 6 2.9406 1.3732 -4.7274 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3632 -1.0278 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 0.7082 1.1607 3.4844 34 1 2.2491 -1.6316 -1.1528 35 1 2.8896 -1.5760 -3.3993 36 1 2.1521 -1.7250 -5.8340 37 1 2.2191 -0.5418 -7.9909 38 1 3.2132 0.4188 -9.5610 39 1 1.4836 0.8102 -9.4085 40 1 0.5070 2.6817 -10.6638 41 1 0.7416 4.1277 -12.6722 42 1 2.9368 4.3110 -13.7735 43 1 4.6574 1.7402 -11.0065 44 1 3.2181 3.0885 -5.9705 45 1 3.1429 1.9092 -3.8119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159620319.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:20 Heat of formation + Delta-G solvation = 0.992503 kcal Electronic energy + Delta-G solvation = -27337.523042 eV Core-core repulsion = 23320.653736 eV Total energy + Delta-G solvation = -4016.869306 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.80609 -40.29471 -39.38401 -37.43297 -34.98222 -34.07982 -33.32896 -32.39098 -32.19583 -30.98289 -29.37938 -27.98758 -26.93852 -25.26196 -24.04033 -23.40605 -22.58646 -22.11472 -20.93139 -19.82479 -18.40372 -18.16411 -17.58570 -17.32062 -17.03981 -16.36309 -15.88402 -15.47305 -15.18473 -15.03543 -14.82027 -14.30737 -14.26879 -14.12661 -13.86701 -13.52468 -13.45898 -13.09340 -13.07857 -12.73457 -12.55597 -12.38356 -12.01232 -11.78886 -11.37125 -11.11289 -10.99178 -10.96547 -10.74865 -10.34575 -10.30261 -10.24443 -9.91239 -9.70812 -9.56615 -9.39847 -9.06882 -8.90506 -8.57728 -8.03429 -7.51194 -6.13841 -4.23318 0.53127 0.80863 1.37969 1.46229 2.94720 3.19530 3.24577 3.30207 3.32554 3.53222 3.64139 3.98744 4.01497 4.28281 4.29336 4.31139 4.48977 4.50842 4.73326 4.85678 4.86424 4.91240 4.96112 5.13527 5.18669 5.29289 5.34249 5.46383 5.62618 5.71001 5.75214 6.00072 6.02464 6.19732 6.28289 6.45858 6.65521 6.79477 6.96841 7.05235 7.11337 7.23024 7.36896 7.45008 7.49742 7.60478 7.82088 7.98640 8.13896 8.71196 8.83550 9.22712 9.45183 10.92129 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.039292 B = 0.001575 C = 0.001558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.434708 B =17776.054606 C =17969.674045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.280 3.720 3 H 0.050 0.950 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.719 5.719 13 C 0.693 3.307 14 O -0.583 6.583 15 N -0.696 5.696 16 C 0.147 3.853 17 C -0.117 4.117 18 C -0.190 4.190 19 C 0.099 3.901 20 O -0.312 6.312 21 C 0.106 3.894 22 C -0.145 4.145 23 C -0.051 4.051 24 C -0.176 4.176 25 C 0.105 3.895 26 N -0.488 5.488 27 C 0.123 3.877 28 C -0.129 4.129 29 C -0.081 4.081 30 H 0.015 0.985 31 H 0.025 0.975 32 H 0.091 0.909 33 H 0.265 0.735 34 H 0.386 0.614 35 H 0.402 0.598 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.158 0.842 43 H 0.158 0.842 44 H 0.131 0.869 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.312 -1.267 -28.021 28.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.178 3.822 3 H 0.068 0.932 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.370 5.370 13 C 0.393 3.607 14 O -0.461 6.461 15 N -0.345 5.345 16 C 0.051 3.949 17 C -0.138 4.138 18 C -0.209 4.209 19 C 0.054 3.946 20 O -0.226 6.226 21 C 0.031 3.969 22 C -0.147 4.147 23 C -0.077 4.077 24 C -0.195 4.195 25 C -0.052 4.052 26 N -0.196 5.196 27 C -0.034 4.034 28 C -0.148 4.148 29 C -0.101 4.101 30 H 0.034 0.966 31 H 0.045 0.955 32 H 0.109 0.891 33 H 0.075 0.925 34 H 0.218 0.782 35 H 0.236 0.764 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.156 0.844 41 H 0.156 0.844 42 H 0.175 0.825 43 H 0.175 0.825 44 H 0.149 0.851 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.759 0.223 -28.240 28.375 hybrid contribution -0.490 -1.718 1.288 2.203 sum 2.269 -1.495 -26.951 27.088 Atomic orbital electron populations 1.22103 0.98534 0.99076 1.00949 1.18685 0.90867 0.93770 0.78843 0.93233 1.21166 1.32625 1.13312 0.90260 0.92133 1.24875 0.94797 0.94957 0.99017 1.69887 1.35669 1.22384 1.24046 0.86492 0.79151 0.79551 0.81782 1.21110 1.20191 1.20177 1.45863 1.68570 1.13295 1.09261 1.16167 0.78596 0.85507 0.80424 1.90864 1.57140 1.14148 1.83973 1.42813 1.68804 1.16252 1.06621 1.17489 1.00433 0.92510 0.84444 1.20634 1.02071 1.00157 0.90941 1.20885 1.08107 0.93489 0.98417 1.18890 0.99586 0.91016 0.85091 1.86136 1.86274 1.37925 1.12292 1.21397 1.01677 0.92416 0.81457 1.20558 0.95345 1.01224 0.97564 1.21592 0.98790 0.92757 0.94602 1.22191 0.99637 1.00524 0.97197 1.22886 0.88333 0.95484 0.98510 1.67768 1.32394 1.07103 1.12327 1.22755 0.96384 0.93838 0.90422 1.20353 1.04661 1.00515 0.89257 1.21305 0.96943 0.93661 0.98198 0.96579 0.95545 0.89093 0.92468 0.78184 0.76377 0.85647 0.85569 0.90788 0.90957 0.84442 0.84386 0.82509 0.82485 0.85127 0.83092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.26 37.16 0.34 -3.33 16 2 C 0.28 7.06 2.56 -69.08 -0.18 6.89 16 3 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 4 C -0.54 -13.98 8.73 -34.44 -0.30 -14.28 16 5 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.64 11.32 55.43 0.63 -24.01 16 8 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 9 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 N -0.72 -14.69 5.07 -59.81 -0.30 -15.00 16 13 C 0.69 13.83 8.37 -86.91 -0.73 13.11 16 14 O -0.58 -13.88 13.44 5.29 0.07 -13.81 16 15 N -0.70 -10.49 5.35 -14.19 -0.08 -10.56 16 16 C 0.15 2.17 6.30 -83.61 -0.53 1.64 16 17 C -0.12 -1.37 9.96 -39.41 -0.39 -1.76 16 18 C -0.19 -2.05 9.03 -39.46 -0.36 -2.40 16 19 C 0.10 1.22 6.69 -39.23 -0.26 0.96 16 20 O -0.31 -3.50 10.12 -19.68 -0.20 -3.70 16 21 C 0.11 0.82 4.89 36.00 0.18 1.00 16 22 C -0.14 -1.15 5.53 -104.48 -0.58 -1.73 16 23 C -0.05 -0.36 9.86 -39.27 -0.39 -0.75 16 24 C -0.18 -1.07 10.11 -39.44 -0.40 -1.47 16 25 C 0.10 0.74 11.18 -17.54 -0.20 0.55 16 26 N -0.49 -4.55 10.36 -13.25 -0.14 -4.68 16 27 C 0.12 1.04 10.86 -17.55 -0.19 0.85 16 28 C -0.13 -1.78 9.98 -39.46 -0.39 -2.17 16 29 C -0.08 -1.27 8.69 -39.41 -0.34 -1.62 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 33 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.39 6.68 8.56 -40.82 -0.35 6.33 16 35 H 0.40 4.59 8.84 -40.82 -0.36 4.23 16 36 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.13 0.99 6.29 -52.49 -0.33 0.66 16 38 H 0.07 0.45 7.61 -51.94 -0.40 0.06 16 39 H 0.07 0.47 7.61 -51.93 -0.40 0.08 16 40 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.14 0.49 8.06 -52.49 -0.42 0.06 16 42 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 43 H 0.16 1.05 8.06 -52.49 -0.42 0.62 16 44 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 45 H 0.15 2.74 6.22 -52.49 -0.33 2.41 16 LS Contribution 383.29 15.07 5.78 5.78 Total: -1.00 -33.04 383.29 -9.86 -42.90 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -5.79 Total: 10.56 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -4.80 Total: -2.85 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: 0.11 Total: -54.26 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.13 Total: -17.51 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.04 -9.86 -42.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159620319.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.893 kcal (2) G-P(sol) polarization free energy of solvation -33.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds