Wall clock time and date at job start Tue Mar 31 2020 06:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47290 * 2 1 4 4 C 1.50694 * 109.47485 * 239.99438 * 2 1 3 5 5 H 1.08003 * 120.00453 * 245.57244 * 4 2 1 6 6 C 1.37876 * 119.99728 * 65.57066 * 4 2 1 7 7 N 1.31513 * 120.00024 * 197.30312 * 6 4 2 8 8 Si 1.86804 * 120.00114 * 17.57760 * 6 4 2 9 9 H 1.48498 * 109.47123 * 179.72539 * 8 6 4 10 10 H 1.48500 * 109.47279 * 299.72564 * 8 6 4 11 11 H 1.48502 * 109.46752 * 59.72427 * 8 6 4 12 12 N 1.46504 * 109.46990 * 119.99521 * 2 1 3 13 13 C 1.34776 * 120.00388 * 275.00315 * 12 2 1 14 14 O 1.21600 * 119.99817 * 359.97438 * 13 12 2 15 15 N 1.34772 * 120.00403 * 180.02562 * 13 12 2 16 16 C 1.40150 * 120.00262 * 184.69618 * 15 13 12 17 17 C 1.38841 * 120.01077 * 323.39571 * 16 15 13 18 18 C 1.38095 * 119.98318 * 179.79666 * 17 16 15 19 19 C 1.38720 * 120.01327 * 0.47774 * 18 17 16 20 20 O 1.35986 * 119.98320 * 179.72855 * 19 18 17 21 21 C 1.42898 * 116.99914 * 0.02562 * 20 19 18 22 22 C 1.50698 * 109.47079 * 180.02562 * 21 20 19 23 23 C 1.38672 * 120.41865 * 269.72260 * 22 21 20 24 24 C 1.38629 * 118.41856 * 179.78041 * 23 22 21 25 25 C 1.38231 * 119.16334 * 0.51451 * 24 23 22 26 26 N 1.31856 * 120.75860 * 359.72563 * 25 24 23 27 27 C 1.31877 * 121.73050 * 359.97438 * 26 25 24 28 28 C 1.38705 * 120.02952 * 359.75259 * 19 18 17 29 29 C 1.38097 * 120.01480 * 0.02562 * 28 19 18 30 30 H 1.08999 * 109.47636 * 186.29312 * 1 2 3 31 31 H 1.09005 * 109.47203 * 306.29602 * 1 2 3 32 32 H 1.09006 * 109.47129 * 66.28920 * 1 2 3 33 33 H 0.96996 * 120.00119 * 355.01534 * 7 6 4 34 34 H 0.97001 * 119.99696 * 94.99671 * 12 2 1 35 35 H 0.97005 * 119.99639 * 4.68844 * 15 13 12 36 36 H 1.07997 * 120.00706 * 0.02562 * 17 16 15 37 37 H 1.08004 * 119.99297 * 180.23406 * 18 17 16 38 38 H 1.09004 * 109.47556 * 299.99978 * 21 20 19 39 39 H 1.09003 * 109.47253 * 60.00186 * 21 20 19 40 40 H 1.08000 * 120.79200 * 0.02562 * 23 22 21 41 41 H 1.08002 * 120.41611 * 180.22178 * 24 23 22 42 42 H 1.07995 * 119.61730 * 179.74744 * 25 24 23 43 43 H 1.07998 * 119.62336 * 180.02562 * 27 26 25 44 44 H 1.08002 * 119.99262 * 179.97438 * 28 19 18 45 45 H 1.08000 * 120.00478 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.5770 -1.6381 -1.1337 6 6 1.7966 -0.1763 -2.4794 7 7 1.9193 -0.9295 -3.5504 8 14 1.3103 1.6191 -2.6508 9 1 1.1219 1.9459 -4.0871 10 1 0.0416 1.8606 -1.9177 11 1 2.3808 2.4781 -2.0839 12 7 2.0183 -0.6905 1.1963 13 6 2.1469 -0.0182 2.3572 14 8 1.8581 1.1618 2.4117 15 7 2.5966 -0.6533 3.4576 16 6 2.6374 0.0184 4.6870 17 6 2.9681 1.3661 4.7313 18 6 3.0041 2.0284 5.9425 19 6 2.7195 1.3451 7.1157 20 8 2.7605 1.9966 8.3087 21 6 3.1031 3.3836 8.2789 22 6 3.0987 3.9323 9.6825 23 6 1.9419 4.4763 10.2200 24 6 1.9833 4.9649 11.5166 25 6 3.1706 4.9038 12.2219 26 7 4.2527 4.3839 11.6768 27 6 4.2486 3.9044 10.4483 28 6 2.3938 -0.0025 7.0726 29 6 2.3530 -0.6649 5.8615 30 1 -0.3634 -1.0214 0.1126 31 1 -0.3634 0.6084 0.8283 32 1 -0.3634 0.4133 -0.9410 33 1 2.2452 -1.8394 -3.4688 34 1 2.2489 -1.6317 1.1528 35 1 2.8920 -1.5754 3.3986 36 1 3.1936 1.8972 3.8183 37 1 3.2576 3.0777 5.9768 38 1 4.0961 3.5034 7.8456 39 1 2.3752 3.9248 7.6745 40 1 1.0294 4.5148 9.6435 41 1 1.1002 5.3922 11.9684 42 1 3.2121 5.2860 13.2311 43 1 5.1546 3.4858 10.0356 44 1 2.1728 -0.5340 7.9864 45 1 2.0997 -1.7142 5.8281 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159620421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:23 Heat of formation + Delta-G solvation = 0.617172 kcal Electronic energy + Delta-G solvation = -27497.120472 eV Core-core repulsion = 23480.234890 eV Total energy + Delta-G solvation = -4016.885582 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.84060 -40.37699 -39.48144 -37.54736 -35.16379 -34.17285 -33.37086 -32.46749 -32.22304 -31.05419 -29.91941 -28.29185 -26.94814 -24.85342 -24.05470 -23.42246 -22.90149 -21.84056 -20.96203 -19.88075 -18.54157 -18.37809 -17.69467 -17.44657 -17.05835 -16.90667 -16.31137 -15.48339 -15.33587 -14.94375 -14.71223 -14.51772 -14.25076 -14.03180 -13.87442 -13.54116 -13.46604 -13.23716 -13.15490 -12.81717 -12.70185 -12.50357 -12.21838 -11.96937 -11.80185 -11.53404 -11.36631 -11.04439 -10.49846 -10.32100 -10.07932 -9.93549 -9.85520 -9.78466 -9.57632 -9.52720 -9.12135 -9.00888 -8.35598 -8.29253 -7.62977 -6.61685 -4.25039 0.51450 0.79241 1.27698 1.40879 2.89948 3.08346 3.36884 3.42959 3.50133 3.51219 3.58609 3.88985 3.96951 4.26573 4.28377 4.39155 4.47629 4.49436 4.72415 4.75665 4.83953 4.87368 4.94398 5.12378 5.14589 5.24800 5.28038 5.35495 5.53911 5.61116 5.74004 5.87195 5.97358 6.18226 6.31643 6.35608 6.40695 6.48319 6.54267 6.65783 6.87405 6.92952 7.11827 7.29677 7.35864 7.44301 7.48108 7.75082 8.20729 8.57873 8.70524 9.07382 9.44077 10.79311 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.024574 B = 0.001767 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.135585 B =15840.494921 C =16466.562203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.258 3.742 3 H 0.042 0.958 4 C -0.618 4.618 5 H 0.061 0.939 6 C 0.039 3.961 7 N -0.897 5.897 8 Si 1.042 2.958 9 H -0.283 1.283 10 H -0.271 1.271 11 H -0.280 1.280 12 N -0.713 5.713 13 C 0.694 3.306 14 O -0.587 6.587 15 N -0.695 5.695 16 C 0.143 3.857 17 C -0.078 4.078 18 C -0.188 4.188 19 C 0.102 3.898 20 O -0.312 6.312 21 C 0.105 3.895 22 C -0.144 4.144 23 C -0.051 4.051 24 C -0.176 4.176 25 C 0.105 3.895 26 N -0.488 5.488 27 C 0.123 3.877 28 C -0.132 4.132 29 C -0.113 4.113 30 H 0.043 0.957 31 H 0.030 0.970 32 H 0.062 0.938 33 H 0.269 0.731 34 H 0.391 0.609 35 H 0.403 0.597 36 H 0.145 0.855 37 H 0.128 0.872 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.158 0.842 43 H 0.158 0.842 44 H 0.131 0.869 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.685 6.847 28.702 29.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.154 3.846 3 H 0.059 0.941 4 C -0.656 4.656 5 H 0.079 0.921 6 C -0.167 4.167 7 N -0.530 5.530 8 Si 0.870 3.130 9 H -0.209 1.209 10 H -0.197 1.197 11 H -0.206 1.206 12 N -0.364 5.364 13 C 0.394 3.606 14 O -0.466 6.466 15 N -0.344 5.344 16 C 0.048 3.952 17 C -0.099 4.099 18 C -0.207 4.207 19 C 0.057 3.943 20 O -0.227 6.227 21 C 0.029 3.971 22 C -0.146 4.146 23 C -0.077 4.077 24 C -0.196 4.196 25 C -0.052 4.052 26 N -0.196 5.196 27 C -0.034 4.034 28 C -0.151 4.151 29 C -0.134 4.134 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.223 0.777 35 H 0.238 0.762 36 H 0.163 0.837 37 H 0.146 0.854 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.156 0.844 41 H 0.156 0.844 42 H 0.175 0.825 43 H 0.175 0.825 44 H 0.148 0.852 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.670 8.957 28.168 29.605 hybrid contribution -0.091 -2.024 0.387 2.062 sum 1.579 6.934 28.555 29.427 Atomic orbital electron populations 1.22521 0.98947 1.00121 1.00401 1.18934 0.90408 0.93937 0.81276 0.94060 1.22070 1.41836 1.10646 0.91053 0.92069 1.25687 0.94265 1.05124 0.91672 1.70882 1.40845 1.09918 1.31328 0.84074 0.77664 0.75049 0.76222 1.20887 1.19717 1.20584 1.45580 1.68594 1.13482 1.08721 1.16161 0.78483 0.85466 0.80443 1.90858 1.57447 1.14123 1.84123 1.42744 1.68661 1.16423 1.06538 1.17463 1.00720 0.92620 0.84421 1.21205 0.96687 0.93734 0.98273 1.21132 1.07302 1.00428 0.91841 1.18883 0.99274 0.92140 0.84051 1.86104 1.85420 1.22833 1.28347 1.21432 1.01563 0.80840 0.93223 1.20554 0.95484 1.01739 0.96861 1.21595 0.97736 0.93420 0.94992 1.22192 1.00048 1.01925 0.95392 1.22886 0.88166 0.94277 0.99890 1.67765 1.30166 1.09699 1.11951 1.22759 0.97557 0.93798 0.89264 1.20089 1.05277 0.91618 0.98094 1.20696 1.01670 1.00353 0.90696 0.93779 0.95120 0.91881 0.92111 0.77652 0.76199 0.83722 0.85435 0.90643 0.90762 0.84433 0.84389 0.82506 0.82472 0.85155 0.85155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 9.16 37.15 0.34 -3.30 16 2 C 0.26 6.14 2.14 -69.09 -0.15 5.99 16 3 H 0.04 1.07 6.23 -51.93 -0.32 0.74 16 4 C -0.62 -16.48 9.00 -34.44 -0.31 -16.79 16 5 H 0.06 1.70 7.96 -52.48 -0.42 1.28 16 6 C 0.04 1.09 5.29 -17.82 -0.09 1.00 16 7 N -0.90 -26.39 13.70 55.43 0.76 -25.63 16 8 Si 1.04 24.84 26.29 -169.99 -4.47 20.37 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 10 H -0.27 -6.06 5.76 56.52 0.33 -5.73 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.71 -14.16 5.07 -59.82 -0.30 -14.46 16 13 C 0.69 13.27 8.37 -86.92 -0.73 12.54 16 14 O -0.59 -13.16 13.53 5.28 0.07 -13.08 16 15 N -0.70 -10.09 5.35 -14.19 -0.08 -10.17 16 16 C 0.14 2.02 6.28 -83.61 -0.52 1.50 16 17 C -0.08 -1.16 8.68 -39.41 -0.34 -1.50 16 18 C -0.19 -2.30 9.03 -39.46 -0.36 -2.66 16 19 C 0.10 1.19 6.69 -39.23 -0.26 0.93 16 20 O -0.31 -3.36 10.12 -19.70 -0.20 -3.56 16 21 C 0.11 0.85 4.89 36.00 0.18 1.02 16 22 C -0.14 -1.15 5.53 -104.48 -0.58 -1.73 16 23 C -0.05 -0.36 9.86 -39.28 -0.39 -0.75 16 24 C -0.18 -1.06 10.11 -39.44 -0.40 -1.46 16 25 C 0.10 0.73 11.18 -17.54 -0.20 0.53 16 26 N -0.49 -4.50 10.36 -13.25 -0.14 -4.64 16 27 C 0.12 1.04 10.86 -17.55 -0.19 0.85 16 28 C -0.13 -1.47 9.98 -39.46 -0.39 -1.87 16 29 C -0.11 -1.30 9.96 -39.41 -0.39 -1.70 16 30 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 1.45 4.88 -51.93 -0.25 1.20 16 33 H 0.27 7.82 8.73 -40.82 -0.36 7.47 16 34 H 0.39 6.77 8.54 -40.82 -0.35 6.43 16 35 H 0.40 4.48 8.84 -40.82 -0.36 4.12 16 36 H 0.15 2.45 6.33 -52.49 -0.33 2.12 16 37 H 0.13 1.28 6.29 -52.48 -0.33 0.95 16 38 H 0.08 0.51 7.61 -51.93 -0.40 0.12 16 39 H 0.07 0.54 7.61 -51.93 -0.40 0.14 16 40 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 41 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 42 H 0.16 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 44 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 45 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 379.07 15.07 5.71 5.71 Total: -1.00 -33.70 379.07 -9.20 -42.90 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -5.77 Total: 9.95 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -4.79 Total: -7.39 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 0.24 Total: -54.90 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.13 Total: -16.65 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -4.47 Total: 20.37 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.70 -9.20 -42.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159620421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.513 kcal (2) G-P(sol) polarization free energy of solvation -33.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds