Wall clock time and date at job start Tue Mar 31 2020 06:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47290 * 2 1 4 4 C 1.50694 * 109.47485 * 239.99438 * 2 1 3 5 5 H 1.08003 * 120.00453 * 245.57244 * 4 2 1 6 6 C 1.37876 * 119.99728 * 65.57066 * 4 2 1 7 7 N 1.31513 * 120.00024 * 197.30312 * 6 4 2 8 8 Si 1.86804 * 120.00114 * 17.57760 * 6 4 2 9 9 H 1.48498 * 109.47123 * 179.72539 * 8 6 4 10 10 H 1.48500 * 109.47279 * 299.72564 * 8 6 4 11 11 H 1.48502 * 109.46752 * 59.72427 * 8 6 4 12 12 N 1.46504 * 109.46990 * 119.99521 * 2 1 3 13 13 C 1.34776 * 120.00388 * 275.00315 * 12 2 1 14 14 O 1.21600 * 119.99817 * 359.97438 * 13 12 2 15 15 N 1.34772 * 120.00403 * 180.02562 * 13 12 2 16 16 C 1.40150 * 120.00262 * 184.69618 * 15 13 12 17 17 C 1.38841 * 120.01077 * 323.39571 * 16 15 13 18 18 C 1.38095 * 119.98318 * 179.79666 * 17 16 15 19 19 C 1.38720 * 120.01327 * 0.47774 * 18 17 16 20 20 O 1.35986 * 119.98320 * 179.72855 * 19 18 17 21 21 C 1.42898 * 116.99914 * 0.02562 * 20 19 18 22 22 C 1.50698 * 109.47079 * 180.02562 * 21 20 19 23 23 C 1.38672 * 120.41865 * 269.72260 * 22 21 20 24 24 C 1.38629 * 118.41856 * 179.78041 * 23 22 21 25 25 C 1.38231 * 119.16334 * 0.51451 * 24 23 22 26 26 N 1.31856 * 120.75860 * 359.72563 * 25 24 23 27 27 C 1.31877 * 121.73050 * 359.97438 * 26 25 24 28 28 C 1.38705 * 120.02952 * 359.75259 * 19 18 17 29 29 C 1.38097 * 120.01480 * 0.02562 * 28 19 18 30 30 H 1.08999 * 109.47636 * 186.29312 * 1 2 3 31 31 H 1.09005 * 109.47203 * 306.29602 * 1 2 3 32 32 H 1.09006 * 109.47129 * 66.28920 * 1 2 3 33 33 H 0.96996 * 120.00119 * 355.01534 * 7 6 4 34 34 H 0.97001 * 119.99696 * 94.99671 * 12 2 1 35 35 H 0.97005 * 119.99639 * 4.68844 * 15 13 12 36 36 H 1.07997 * 120.00706 * 0.02562 * 17 16 15 37 37 H 1.08004 * 119.99297 * 180.23406 * 18 17 16 38 38 H 1.09004 * 109.47556 * 299.99978 * 21 20 19 39 39 H 1.09003 * 109.47253 * 60.00186 * 21 20 19 40 40 H 1.08000 * 120.79200 * 0.02562 * 23 22 21 41 41 H 1.08002 * 120.41611 * 180.22178 * 24 23 22 42 42 H 1.07995 * 119.61730 * 179.74744 * 25 24 23 43 43 H 1.07998 * 119.62336 * 180.02562 * 27 26 25 44 44 H 1.08002 * 119.99262 * 179.97438 * 28 19 18 45 45 H 1.08000 * 120.00478 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.5770 -1.6381 -1.1337 6 6 1.7966 -0.1763 -2.4794 7 7 1.9193 -0.9295 -3.5504 8 14 1.3103 1.6191 -2.6508 9 1 1.1219 1.9459 -4.0871 10 1 0.0416 1.8606 -1.9177 11 1 2.3808 2.4781 -2.0839 12 7 2.0183 -0.6905 1.1963 13 6 2.1469 -0.0182 2.3572 14 8 1.8581 1.1618 2.4117 15 7 2.5966 -0.6533 3.4576 16 6 2.6374 0.0184 4.6870 17 6 2.9681 1.3661 4.7313 18 6 3.0041 2.0284 5.9425 19 6 2.7195 1.3451 7.1157 20 8 2.7605 1.9966 8.3087 21 6 3.1031 3.3836 8.2789 22 6 3.0987 3.9323 9.6825 23 6 1.9419 4.4763 10.2200 24 6 1.9833 4.9649 11.5166 25 6 3.1706 4.9038 12.2219 26 7 4.2527 4.3839 11.6768 27 6 4.2486 3.9044 10.4483 28 6 2.3938 -0.0025 7.0726 29 6 2.3530 -0.6649 5.8615 30 1 -0.3634 -1.0214 0.1126 31 1 -0.3634 0.6084 0.8283 32 1 -0.3634 0.4133 -0.9410 33 1 2.2452 -1.8394 -3.4688 34 1 2.2489 -1.6317 1.1528 35 1 2.8920 -1.5754 3.3986 36 1 3.1936 1.8972 3.8183 37 1 3.2576 3.0777 5.9768 38 1 4.0961 3.5034 7.8456 39 1 2.3752 3.9248 7.6745 40 1 1.0294 4.5148 9.6435 41 1 1.1002 5.3922 11.9684 42 1 3.2121 5.2860 13.2311 43 1 5.1546 3.4858 10.0356 44 1 2.1728 -0.5340 7.9864 45 1 2.0997 -1.7142 5.8281 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159620421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:22 Heat of formation + Delta-G solvation = -22.024321 kcal Electronic energy + Delta-G solvation = -27498.102281 eV Core-core repulsion = 23480.234890 eV Total energy + Delta-G solvation = -4017.867391 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.73975 -41.27176 -40.51954 -38.61702 -36.85582 -35.43476 -34.46793 -33.97672 -32.78433 -31.99423 -31.56762 -29.36522 -27.67361 -26.86278 -24.58296 -24.38653 -23.95648 -22.74294 -22.26182 -21.53650 -20.21126 -19.29043 -19.04432 -18.34809 -18.08713 -17.64939 -17.15463 -16.62737 -16.36328 -16.18553 -15.88983 -15.58310 -15.34664 -15.11632 -14.91811 -14.63311 -14.58198 -14.41252 -14.14019 -14.05851 -13.93339 -13.78798 -13.51513 -13.41033 -13.30960 -12.57793 -12.43032 -12.32675 -11.99472 -11.90814 -11.67033 -11.26309 -11.12088 -10.88154 -10.81102 -10.46817 -10.46666 -10.10341 -9.98113 -9.95514 -8.82530 -8.66067 -6.44569 -0.02404 0.27132 0.33573 0.40224 1.46691 1.51699 1.68061 1.76647 2.12258 2.22261 2.41914 2.82940 2.92080 3.01396 3.35349 3.46348 3.69415 3.77168 3.89526 3.93799 4.00149 4.02868 4.21956 4.35925 4.40976 4.46134 4.49338 4.57029 4.62201 4.72864 4.78713 4.80179 4.90479 5.04347 5.09408 5.12110 5.22366 5.32563 5.38152 5.44475 5.49158 5.61617 5.63489 5.69574 5.87482 6.00137 6.16135 6.41545 6.52675 6.94739 7.13985 7.29139 7.59561 8.59620 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.024574 B = 0.001767 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.135585 B =15840.494921 C =16466.562203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.262 3.738 3 H 0.024 0.976 4 C -0.613 4.613 5 H 0.041 0.959 6 C -0.004 4.004 7 N -0.926 5.926 8 Si 1.073 2.927 9 H -0.282 1.282 10 H -0.247 1.247 11 H -0.274 1.274 12 N -0.714 5.714 13 C 0.695 3.305 14 O -0.622 6.622 15 N -0.676 5.676 16 C 0.115 3.885 17 C -0.100 4.100 18 C -0.190 4.190 19 C 0.106 3.894 20 O -0.318 6.318 21 C 0.102 3.898 22 C -0.154 4.154 23 C -0.060 4.060 24 C -0.171 4.171 25 C 0.095 3.905 26 N -0.517 5.517 27 C 0.108 3.892 28 C -0.132 4.132 29 C -0.099 4.099 30 H 0.051 0.949 31 H 0.037 0.963 32 H 0.056 0.944 33 H 0.258 0.742 34 H 0.402 0.598 35 H 0.420 0.580 36 H 0.116 0.884 37 H 0.144 0.856 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.152 0.848 41 H 0.167 0.833 42 H 0.181 0.819 43 H 0.164 0.836 44 H 0.154 0.846 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.669 7.264 31.426 32.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.157 3.843 3 H 0.042 0.958 4 C -0.651 4.651 5 H 0.060 0.940 6 C -0.205 4.205 7 N -0.561 5.561 8 Si 0.895 3.105 9 H -0.208 1.208 10 H -0.172 1.172 11 H -0.199 1.199 12 N -0.366 5.366 13 C 0.395 3.605 14 O -0.503 6.503 15 N -0.326 5.326 16 C 0.021 3.979 17 C -0.121 4.121 18 C -0.209 4.209 19 C 0.061 3.939 20 O -0.233 6.233 21 C 0.027 3.973 22 C -0.156 4.156 23 C -0.086 4.086 24 C -0.191 4.191 25 C -0.062 4.062 26 N -0.226 5.226 27 C -0.048 4.048 28 C -0.151 4.151 29 C -0.119 4.119 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.237 0.763 35 H 0.258 0.742 36 H 0.134 0.866 37 H 0.161 0.839 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.170 0.830 41 H 0.184 0.816 42 H 0.198 0.802 43 H 0.182 0.818 44 H 0.171 0.829 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.676 9.327 30.954 32.336 hybrid contribution 0.283 -2.146 -0.248 2.179 sum 0.959 7.181 30.706 31.549 Atomic orbital electron populations 1.22390 0.97686 1.00764 1.00328 1.18623 0.91243 0.92816 0.81611 0.95850 1.22233 1.40704 1.09786 0.92376 0.94027 1.26805 0.94191 1.07817 0.91719 1.70984 1.43104 1.09751 1.32260 0.83686 0.78793 0.71444 0.76567 1.20778 1.17156 1.19934 1.45261 1.69122 1.13957 1.08237 1.16205 0.78301 0.85010 0.80976 1.90838 1.58891 1.15729 1.84794 1.42421 1.67595 1.17002 1.05582 1.17689 1.02717 0.92764 0.84747 1.21090 0.98484 0.94410 0.98114 1.21227 1.07122 1.01267 0.91255 1.19018 0.98261 0.92547 0.84117 1.86106 1.85224 1.24216 1.27755 1.21600 1.02410 0.79574 0.93746 1.20580 0.95876 1.02375 0.96783 1.21901 0.97950 0.93109 0.95653 1.22514 1.00694 1.00940 0.94909 1.23380 0.88035 0.93739 1.01006 1.67767 1.31536 1.10797 1.12476 1.22937 0.98203 0.94261 0.89423 1.20436 1.04295 0.91551 0.98852 1.20938 0.99933 1.01523 0.89533 0.92950 0.94409 0.92479 0.93247 0.76276 0.74188 0.86636 0.83881 0.89626 0.89899 0.82990 0.81551 0.80181 0.81842 0.82862 0.82271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.72 9.16 71.98 0.66 -6.06 16 2 C 0.26 12.37 2.14 44.24 0.09 12.47 16 3 H 0.02 1.21 6.23 -2.39 -0.01 1.19 16 4 C -0.61 -32.90 9.00 25.60 0.23 -32.67 16 5 H 0.04 2.35 7.96 -2.91 -0.02 2.33 16 6 C 0.00 -0.24 5.29 84.65 0.45 0.20 16 7 N -0.93 -55.32 13.70 21.45 0.29 -55.03 16 8 Si 1.07 49.79 26.29 68.60 1.80 51.59 16 9 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 10 H -0.25 -10.45 5.76 99.48 0.57 -9.88 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 12 N -0.71 -27.96 5.07 -461.42 -2.34 -30.30 16 13 C 0.69 26.22 8.37 179.06 1.50 27.72 16 14 O -0.62 -27.99 13.53 -4.03 -0.05 -28.05 16 15 N -0.68 -18.86 5.35 -317.06 -1.70 -20.55 16 16 C 0.12 3.12 6.28 38.10 0.24 3.35 16 17 C -0.10 -2.96 8.68 22.38 0.19 -2.76 16 18 C -0.19 -4.46 9.03 22.35 0.20 -4.26 16 19 C 0.11 2.28 6.69 22.50 0.15 2.43 16 20 O -0.32 -6.21 10.12 -93.39 -0.95 -7.16 16 21 C 0.10 1.49 4.89 71.24 0.35 1.83 16 22 C -0.15 -2.26 5.53 -19.77 -0.11 -2.37 16 23 C -0.06 -0.72 9.86 22.47 0.22 -0.50 16 24 C -0.17 -1.66 10.11 22.36 0.23 -1.43 16 25 C 0.09 1.16 11.18 84.69 0.95 2.11 16 26 N -0.52 -9.10 10.36 -195.84 -2.03 -11.13 16 27 C 0.11 1.75 10.86 84.67 0.92 2.67 16 28 C -0.13 -2.59 9.98 22.35 0.22 -2.36 16 29 C -0.10 -2.01 9.96 22.38 0.22 -1.78 16 30 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.06 2.55 4.88 -2.38 -0.01 2.53 16 33 H 0.26 15.44 8.73 -92.71 -0.81 14.63 16 34 H 0.40 13.67 8.54 -92.71 -0.79 12.87 16 35 H 0.42 8.58 8.84 -92.70 -0.82 7.76 16 36 H 0.12 4.08 6.33 -2.91 -0.02 4.06 16 37 H 0.14 2.75 6.29 -2.91 -0.02 2.73 16 38 H 0.09 1.06 7.61 -2.39 -0.02 1.04 16 39 H 0.08 1.06 7.61 -2.39 -0.02 1.05 16 40 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 41 H 0.17 0.58 8.06 -2.91 -0.02 0.55 16 42 H 0.18 1.13 8.06 -2.91 -0.02 1.11 16 43 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 44 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 45 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -73.38 379.07 1.01 -72.36 By element: Atomic # 1 Polarization: 30.41 SS G_CDS: -0.74 Total: 29.67 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 6.72 Total: -1.42 kcal Atomic # 7 Polarization: -111.24 SS G_CDS: -5.77 Total: -117.01 kcal Atomic # 8 Polarization: -34.20 SS G_CDS: -1.00 Total: -35.20 kcal Atomic # 14 Polarization: 49.79 SS G_CDS: 1.80 Total: 51.59 kcal Total: -73.38 1.01 -72.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159620421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.340 kcal (2) G-P(sol) polarization free energy of solvation -73.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds