Wall clock time and date at job start Tue Mar 31 2020 05:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39226 * 119.61380 * 2 1 4 4 C 1.36203 * 121.04080 * 179.97438 * 3 2 1 5 5 C 1.40453 * 119.82133 * 0.08713 * 4 3 2 6 6 N 1.34021 * 120.77177 * 179.91599 * 5 4 3 7 7 C 1.30806 * 121.93655 * 180.02562 * 6 5 4 8 8 C 1.40477 * 121.62389 * 0.27395 * 7 6 5 9 9 C 1.47350 * 120.33117 * 179.72180 * 8 7 6 10 10 O 1.21619 * 119.99822 * 145.32320 * 9 8 7 11 11 N 1.34777 * 120.00481 * 325.32436 * 9 8 7 12 12 C 1.46499 * 119.99615 * 6.61519 * 11 9 8 13 13 C 1.50706 * 109.47103 * 106.16755 * 12 11 9 14 14 H 1.08002 * 120.00003 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99519 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99108 * 179.97438 * 15 13 12 17 17 Si 1.86792 * 120.00474 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47471 * 89.99873 * 17 15 13 19 19 H 1.48493 * 109.47166 * 210.00302 * 17 15 13 20 20 H 1.48506 * 109.47171 * 330.00189 * 17 15 13 21 21 C 1.46501 * 120.00150 * 186.61122 * 11 9 8 22 22 C 1.52999 * 109.46745 * 94.92017 * 21 11 9 23 23 C 1.53004 * 117.49611 * 247.02204 * 22 21 11 24 24 C 1.53003 * 117.49374 * 178.36635 * 22 21 11 25 25 C 1.39943 * 119.32702 * 359.43035 * 8 7 6 26 26 O 1.35248 * 121.09664 * 180.24267 * 25 8 7 27 27 C 1.41340 * 117.80213 * 0.57132 * 25 8 7 28 28 C 1.36279 * 119.61184 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.47454 * 269.98000 * 1 2 3 30 30 H 1.08996 * 109.47198 * 29.98262 * 1 2 3 31 31 H 1.09007 * 109.46603 * 149.98127 * 1 2 3 32 32 H 1.07996 * 119.47825 * 0.02562 * 3 2 1 33 33 H 1.08004 * 120.09157 * 180.02562 * 4 3 2 34 34 H 1.07994 * 119.18656 * 179.97438 * 7 6 5 35 35 H 1.09006 * 109.46818 * 226.16164 * 12 11 9 36 36 H 1.08996 * 109.47543 * 346.16517 * 12 11 9 37 37 H 0.97004 * 119.99504 * 179.97438 * 16 15 13 38 38 H 1.08999 * 109.46949 * 214.92482 * 21 11 9 39 39 H 1.09003 * 109.46941 * 334.92261 * 21 11 9 40 40 H 1.08999 * 115.55291 * 32.69753 * 22 21 11 41 41 H 1.08998 * 117.49682 * 0.02562 * 23 22 21 42 42 H 1.09001 * 117.49493 * 145.01975 * 23 22 21 43 43 H 1.09002 * 117.49663 * 214.97826 * 24 22 21 44 44 H 1.09003 * 117.50378 * 0.02562 * 24 22 21 45 45 H 0.96702 * 113.99920 * 270.34090 * 26 25 8 46 46 H 1.08003 * 120.17923 * 0.02797 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.2104 0.0000 4 6 3.5566 1.2443 0.0005 5 6 4.2852 0.0435 -0.0008 6 7 5.6254 0.0547 -0.0020 7 6 6.3265 -1.0496 -0.0037 8 6 5.7115 -2.3126 -0.0101 9 6 6.5292 -3.5383 -0.0181 10 8 6.1468 -4.5282 0.5760 11 7 7.7009 -3.5626 -0.6837 12 6 8.2320 -2.3327 -1.2766 13 6 9.3933 -1.8387 -0.4528 14 1 9.7042 -2.3859 0.4249 15 6 10.0586 -0.6881 -0.8197 16 7 11.0717 -0.2568 -0.1004 17 14 9.5212 0.2579 -2.3381 18 1 8.5000 1.2665 -1.9573 19 1 10.6952 0.9433 -2.9355 20 1 8.9411 -0.6842 -3.3287 21 6 8.4434 -4.8187 -0.8142 22 6 8.0897 -5.4841 -2.1458 23 6 7.3168 -6.8036 -2.0929 24 6 8.7955 -6.7976 -2.4885 25 6 4.3145 -2.3947 -0.0027 26 8 3.6852 -3.5919 -0.0035 27 6 3.5830 -1.1854 -0.0013 28 6 2.1804 -1.1848 -0.0005 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3633 -0.8899 -0.5142 32 1 1.6403 2.1370 0.0004 33 1 4.0747 2.1920 0.0009 34 1 7.4047 -0.9888 -0.0050 35 1 8.5682 -2.5354 -2.2935 36 1 7.4513 -1.5724 -1.2967 37 1 11.5400 0.5525 -0.3587 38 1 9.5134 -4.6132 -0.7835 39 1 8.1776 -5.4848 0.0067 40 1 7.8672 -4.8031 -2.9672 41 1 7.0601 -7.1973 -1.1094 42 1 6.5861 -6.9906 -2.8797 43 1 9.0370 -6.9808 -3.5356 44 1 9.5116 -7.1879 -1.7653 45 1 3.5019 -3.9392 -0.8872 46 1 1.6370 -2.1182 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170594491.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:00 Heat of formation + Delta-G solvation = 25.151751 kcal Electronic energy + Delta-G solvation = -29793.609891 eV Core-core repulsion = 25843.214119 eV Total energy + Delta-G solvation = -3950.395772 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.09108 -39.36217 -37.83890 -37.16236 -36.80230 -34.99952 -32.58829 -32.48181 -31.70764 -30.41468 -28.63605 -26.96039 -26.71540 -24.12575 -23.08793 -22.43162 -22.13729 -21.93550 -20.70312 -19.19438 -18.88186 -17.57512 -17.26900 -17.06629 -16.12916 -15.95979 -15.49718 -14.93327 -14.75030 -14.51490 -14.39204 -14.20465 -14.13060 -13.85261 -13.73676 -13.52976 -13.31442 -13.03342 -12.58153 -12.46970 -12.06260 -11.98867 -11.61216 -11.55599 -11.47497 -11.33762 -11.10307 -10.98425 -10.72849 -10.55425 -10.43506 -10.17029 -10.07033 -9.71403 -9.68152 -9.51723 -9.06792 -8.84995 -8.52067 -8.06424 -7.83511 -6.33139 -4.37725 0.31309 0.77353 1.86473 2.76040 3.17321 3.21966 3.27191 3.40470 3.59191 3.88335 4.06625 4.18542 4.19597 4.47271 4.62142 4.69442 4.85609 4.96497 4.97397 5.00925 5.13256 5.15982 5.20369 5.27108 5.32693 5.39953 5.55763 5.61400 5.68297 5.76710 5.78734 5.85128 6.00517 6.04686 6.07161 6.13723 6.21144 6.26507 6.29463 6.33435 6.44529 6.54925 6.59907 6.63740 6.86852 7.14746 7.32722 7.52209 7.94922 8.15539 8.30204 8.69332 8.78009 9.24215 10.78083 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009445 B = 0.004633 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2963.928319 B = 6041.659148 C = 8347.658833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.101 4.101 3 C -0.093 4.093 4 C -0.096 4.096 5 C 0.149 3.851 6 N -0.488 5.488 7 C 0.165 3.835 8 C -0.210 4.210 9 C 0.564 3.436 10 O -0.541 6.541 11 N -0.580 5.580 12 C 0.182 3.818 13 C -0.551 4.551 14 H 0.085 0.915 15 C 0.086 3.914 16 N -0.877 5.877 17 Si 0.857 3.143 18 H -0.261 1.261 19 H -0.280 1.280 20 H -0.263 1.263 21 C 0.150 3.850 22 C -0.162 4.162 23 C -0.178 4.178 24 C -0.176 4.176 25 C 0.216 3.784 26 O -0.467 6.467 27 C -0.138 4.138 28 C -0.081 4.081 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.128 0.872 33 H 0.138 0.862 34 H 0.216 0.784 35 H 0.033 0.967 36 H 0.049 0.951 37 H 0.270 0.730 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.395 0.605 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.245 -2.346 -4.977 17.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.101 4.101 3 C -0.113 4.113 4 C -0.115 4.115 5 C 0.028 3.972 6 N -0.197 5.197 7 C -0.005 4.005 8 C -0.216 4.216 9 C 0.351 3.649 10 O -0.420 6.420 11 N -0.309 5.309 12 C 0.061 3.939 13 C -0.589 4.589 14 H 0.103 0.897 15 C -0.120 4.120 16 N -0.513 5.513 17 Si 0.682 3.318 18 H -0.185 1.185 19 H -0.205 1.205 20 H -0.188 1.188 21 C 0.027 3.973 22 C -0.182 4.182 23 C -0.215 4.215 24 C -0.214 4.214 25 C 0.161 3.839 26 O -0.277 6.277 27 C -0.141 4.141 28 C -0.100 4.100 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.146 0.854 33 H 0.156 0.844 34 H 0.232 0.768 35 H 0.051 0.949 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.120 0.880 41 H 0.114 0.886 42 H 0.104 0.896 43 H 0.109 0.891 44 H 0.113 0.887 45 H 0.253 0.747 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -15.925 -1.805 -4.047 16.530 hybrid contribution -0.420 -0.201 -1.359 1.436 sum -16.345 -2.006 -5.406 17.332 Atomic orbital electron populations 1.20784 0.90881 1.02750 1.02387 1.19609 0.96342 0.92906 1.01256 1.20805 0.93935 0.97681 0.98860 1.20818 0.93446 0.97087 1.00112 1.19067 0.90044 0.92092 0.95997 1.68245 1.05566 1.30856 1.15048 1.24812 1.03638 0.85216 0.86864 1.21558 0.93743 0.96846 1.09438 1.17703 0.81220 0.86561 0.79438 1.90745 1.71821 1.35503 1.43923 1.47695 1.19772 1.10365 1.53068 1.20592 0.95614 0.82635 0.95074 1.21299 1.13896 1.10537 1.13167 0.89731 1.24862 0.94213 0.96702 0.96235 1.69874 1.20030 1.22981 1.38370 0.87110 0.79469 0.81396 0.83777 1.18518 1.20520 1.18767 1.20911 0.97061 0.84863 0.94491 1.22759 1.04623 0.90478 1.00301 1.23001 0.94141 1.01631 1.02745 1.22901 0.95410 1.01263 1.01833 1.18747 0.88521 0.84746 0.91893 1.84647 1.78130 1.31993 1.32948 1.19073 0.95071 0.93138 1.06786 1.20721 0.91987 0.98335 0.98922 0.91135 0.91486 0.91554 0.85392 0.84389 0.76814 0.94924 0.93377 0.91976 0.89108 0.90124 0.87983 0.88604 0.89568 0.89108 0.88711 0.74689 0.85118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 9.99 36.01 0.36 -0.48 16 2 C -0.10 -1.11 5.85 -104.96 -0.61 -1.72 16 3 C -0.09 -1.04 9.58 -39.95 -0.38 -1.42 16 4 C -0.10 -1.33 9.97 -39.48 -0.39 -1.73 16 5 C 0.15 2.55 6.60 -84.82 -0.56 1.99 16 6 N -0.49 -9.67 10.30 -11.15 -0.11 -9.79 16 7 C 0.17 3.40 8.56 -17.15 -0.15 3.25 16 8 C -0.21 -4.11 5.52 -104.71 -0.58 -4.69 16 9 C 0.56 11.68 7.28 -12.55 -0.09 11.58 16 10 O -0.54 -12.06 15.46 -11.91 -0.18 -12.24 16 11 N -0.58 -11.71 2.51 -176.35 -0.44 -12.15 16 12 C 0.18 3.93 3.79 -5.19 -0.02 3.91 16 13 C -0.55 -13.93 8.10 -34.44 -0.28 -14.20 16 14 H 0.08 2.38 8.06 -52.49 -0.42 1.95 16 15 C 0.09 2.25 5.47 -17.82 -0.10 2.15 16 16 N -0.88 -24.62 13.96 55.43 0.77 -23.85 16 17 Si 0.86 19.37 27.47 -169.99 -4.67 14.71 16 18 H -0.26 -5.89 7.11 56.52 0.40 -5.49 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.26 -5.65 6.54 56.52 0.37 -5.28 16 21 C 0.15 2.70 5.73 -4.04 -0.02 2.67 16 22 C -0.16 -2.48 6.01 -90.62 -0.54 -3.02 16 23 C -0.18 -2.39 10.18 -26.69 -0.27 -2.66 16 24 C -0.18 -2.23 10.25 -26.69 -0.27 -2.51 16 25 C 0.22 3.68 6.75 -37.76 -0.25 3.43 16 26 O -0.47 -7.02 11.53 -34.61 -0.40 -7.42 16 27 C -0.14 -2.20 5.75 -106.70 -0.61 -2.81 16 28 C -0.08 -1.03 9.19 -39.53 -0.36 -1.39 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 31 H 0.07 0.45 8.07 -51.92 -0.42 0.03 16 32 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.14 1.74 8.06 -52.48 -0.42 1.32 16 34 H 0.22 4.85 4.03 -52.49 -0.21 4.63 16 35 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 36 H 0.05 1.05 3.10 -52.86 -0.16 0.88 16 37 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.09 1.69 7.86 -51.93 -0.41 1.28 16 39 H 0.08 1.48 6.96 -51.93 -0.36 1.12 16 40 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 41 H 0.10 1.34 8.04 -51.93 -0.42 0.93 16 42 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.39 4.02 9.06 45.56 0.41 4.43 16 46 H 0.13 1.42 7.66 -52.48 -0.40 1.01 16 LS Contribution 379.80 15.07 5.72 5.72 Total: -1.00 -31.09 379.80 -9.77 -40.86 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -5.31 Total: 11.79 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -5.15 Total: -7.64 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.22 Total: -45.78 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.58 Total: -19.66 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.67 Total: 14.71 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.09 -9.77 -40.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170594491.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.016 kcal (2) G-P(sol) polarization free energy of solvation -31.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds