Wall clock time and date at job start Tue Mar 31 2020 05:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47497 * 27.14128 * 3 2 1 5 5 N 1.46897 * 109.47270 * 174.87551 * 4 3 2 6 6 C 1.46901 * 110.99898 * 199.71242 * 5 4 3 7 7 C 1.50692 * 109.46934 * 66.04927 * 6 5 4 8 8 H 1.07999 * 120.00418 * 359.97438 * 7 6 5 9 9 C 1.37886 * 120.00052 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99557 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00280 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47129 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46973 * 120.00180 * 11 9 7 14 14 H 1.48494 * 109.47229 * 240.00131 * 11 9 7 15 15 C 1.46900 * 110.99727 * 75.75844 * 5 4 3 16 16 C 1.50707 * 109.47111 * 199.75818 * 15 5 4 17 17 C 1.38219 * 119.98491 * 264.44445 * 16 15 5 18 18 C 1.38449 * 119.99577 * 179.97438 * 17 16 15 19 19 F 1.35098 * 120.01936 * 180.02562 * 18 17 16 20 20 C 1.38464 * 119.95494 * 359.97438 * 18 17 16 21 21 C 1.38263 * 119.96732 * 0.02562 * 20 18 17 22 22 Br 1.89098 * 119.99697 * 179.97438 * 21 20 18 23 23 C 1.38212 * 119.97723 * 84.41971 * 16 15 5 24 24 H 1.09002 * 109.47101 * 267.13622 * 3 2 1 25 25 H 1.09001 * 109.46876 * 147.14087 * 3 2 1 26 26 H 1.09004 * 109.47071 * 54.87542 * 4 3 2 27 27 H 1.09001 * 109.47051 * 294.88007 * 4 3 2 28 28 H 1.09003 * 109.47143 * 186.04869 * 6 5 4 29 29 H 1.09003 * 109.47182 * 306.04853 * 6 5 4 30 30 H 0.96996 * 119.99809 * 179.97438 * 10 9 7 31 31 H 1.09002 * 109.47060 * 79.76270 * 15 5 4 32 32 H 1.08993 * 109.47375 * 319.76139 * 15 5 4 33 33 H 1.08002 * 120.00200 * 359.97438 * 17 16 15 34 34 H 1.08001 * 120.01435 * 180.27751 * 20 18 17 35 35 H 1.07993 * 119.98179 * 0.04019 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.2828 -0.6580 5 7 4.5824 -1.2273 -0.7689 6 6 5.0701 -2.1754 -1.7795 7 6 4.5909 -1.7474 -3.1425 8 1 3.9843 -0.8600 -3.2477 9 6 4.9268 -2.4886 -4.2556 10 7 5.6650 -3.5695 -4.1275 11 14 4.3321 -1.9584 -5.9452 12 1 3.5239 -0.7190 -5.8191 13 1 5.5017 -1.6990 -6.8226 14 1 3.4986 -3.0355 -6.5370 15 6 5.2185 -1.4714 0.5325 16 6 6.6303 -0.9445 0.5083 17 6 7.6803 -1.7954 0.2187 18 6 8.9773 -1.3114 0.1959 19 9 10.0039 -2.1425 -0.0876 20 6 9.2213 0.0252 0.4629 21 6 8.1697 0.8748 0.7524 22 35 8.5020 2.7001 1.1178 23 6 6.8742 0.3895 0.7753 24 1 2.9713 0.0522 1.0264 25 1 2.9709 0.8641 -0.5576 26 1 2.6824 -1.3798 -1.6522 27 1 2.8326 -2.1413 -0.0504 28 1 6.1599 -2.1920 -1.7662 29 1 4.6888 -3.1720 -1.5567 30 1 5.9010 -4.0911 -4.9105 31 1 5.2340 -2.5425 0.7341 32 1 4.6542 -0.9627 1.3139 33 1 7.4891 -2.8376 0.0102 34 1 10.2322 0.4046 0.4410 35 1 6.0531 1.0534 1.0017 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177705237.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:54 Heat of formation + Delta-G solvation = 7.537857 kcal Electronic energy + Delta-G solvation = -20698.232901 eV Core-core repulsion = 17270.919398 eV Total energy + Delta-G solvation = -3427.313502 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.028 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.78364 -39.34928 -37.37876 -36.10665 -32.89281 -32.65136 -31.45358 -30.40571 -29.20246 -27.44677 -25.28782 -23.24974 -22.44393 -21.72495 -20.11590 -17.37461 -17.13894 -16.62651 -16.31953 -16.12917 -15.53015 -15.12196 -14.82186 -14.67566 -14.04816 -13.75755 -13.56586 -13.30901 -13.07063 -12.67751 -12.49416 -12.27621 -12.10293 -12.02560 -11.72145 -11.41821 -11.16837 -10.94767 -10.78270 -10.72827 -10.65925 -10.40325 -10.33884 -9.97380 -9.31010 -8.75731 -8.59943 -8.51753 -7.57169 -6.12362 -4.13835 1.04038 1.18298 1.51490 2.91687 2.96296 3.26476 3.35071 3.38320 3.47573 4.13847 4.30344 4.37086 4.66327 4.93239 5.03751 5.08138 5.22098 5.26306 5.32120 5.34604 5.45902 5.67216 5.72651 5.79509 5.97468 6.08490 6.11551 6.17888 6.43590 6.52208 6.82459 7.05668 7.14079 7.64224 7.73861 7.85969 7.99288 8.34525 8.93058 9.51225 10.98365 Molecular weight = 340.03amu Principal moments of inertia in cm(-1) A = 0.008839 B = 0.004237 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3167.082459 B = 6607.510828 C = 8188.201580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C 0.218 3.782 3 C -0.028 4.028 4 C 0.065 3.935 5 N -0.529 5.529 6 C 0.190 3.810 7 C -0.511 4.511 8 H 0.066 0.934 9 C 0.059 3.941 10 N -0.895 5.895 11 Si 0.894 3.106 12 H -0.271 1.271 13 H -0.284 1.284 14 H -0.285 1.285 15 C 0.084 3.916 16 C -0.024 4.024 17 C -0.120 4.120 18 C 0.105 3.895 19 F -0.136 7.136 20 C -0.135 4.135 21 C -0.067 4.067 22 Br -0.049 7.049 23 C -0.080 4.080 24 H 0.100 0.900 25 H 0.117 0.883 26 H 0.099 0.901 27 H 0.033 0.967 28 H 0.039 0.961 29 H -0.006 1.006 30 H 0.262 0.738 31 H 0.046 0.954 32 H 0.079 0.921 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.944 9.124 13.725 17.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.100 4.100 3 C -0.068 4.068 4 C -0.065 4.065 5 N -0.253 5.253 6 C 0.066 3.934 7 C -0.550 4.550 8 H 0.084 0.916 9 C -0.143 4.143 10 N -0.535 5.535 11 Si 0.722 3.278 12 H -0.196 1.196 13 H -0.210 1.210 14 H -0.211 1.211 15 C -0.044 4.044 16 C -0.026 4.026 17 C -0.140 4.140 18 C 0.085 3.915 19 F -0.114 7.114 20 C -0.156 4.156 21 C -0.146 4.146 22 Br 0.036 6.964 23 C -0.100 4.100 24 H 0.118 0.882 25 H 0.135 0.865 26 H 0.117 0.883 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.012 0.988 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.160 0.840 34 H 0.157 0.843 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.611 10.100 13.584 17.832 hybrid contribution 0.269 -1.211 -1.046 1.622 sum 5.880 8.889 12.538 16.456 Atomic orbital electron populations 1.81180 1.13275 1.09222 1.09528 1.29339 0.95417 0.92675 0.92559 1.19431 0.80592 1.02960 1.03846 1.21913 0.89588 0.92900 1.02111 1.62072 1.03460 1.54995 1.04754 1.19851 0.96483 0.88209 0.88866 1.21145 1.32576 1.10520 0.90719 0.91630 1.24955 0.95170 0.94926 0.99287 1.69945 1.37292 1.16156 1.30064 0.86498 0.78582 0.78632 0.84094 1.19583 1.20979 1.21112 1.21124 0.90510 0.98926 0.93851 1.19626 0.95319 0.92394 0.95282 1.21303 0.90593 1.02076 1.00028 1.17463 0.84613 0.87713 1.01703 1.91514 1.57696 1.71132 1.91102 1.20913 0.99775 0.91808 1.03115 1.21390 0.95588 0.90875 1.06750 1.96697 1.96342 1.09292 1.94065 1.20964 0.94717 0.95324 0.99010 0.88227 0.86475 0.88303 0.94830 0.94316 0.98797 0.92871 0.93607 0.90235 0.84022 0.84304 0.84325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.37 18.54 42.16 0.78 -6.59 16 2 C 0.22 2.94 15.43 -20.76 -0.32 2.62 16 3 C -0.03 -0.30 5.75 -29.52 -0.17 -0.47 16 4 C 0.06 0.96 4.75 -3.82 -0.02 0.94 16 5 N -0.53 -8.87 4.34 -237.51 -1.03 -9.90 16 6 C 0.19 4.26 4.54 -4.98 -0.02 4.24 16 7 C -0.51 -12.97 8.23 -34.44 -0.28 -13.25 16 8 H 0.07 1.64 7.31 -52.49 -0.38 1.26 16 9 C 0.06 1.56 5.46 -17.81 -0.10 1.46 16 10 N -0.90 -25.13 13.29 55.43 0.74 -24.39 16 11 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 C 0.08 1.12 4.95 -4.97 -0.02 1.09 16 16 C -0.02 -0.34 5.03 -104.63 -0.53 -0.86 16 17 C -0.12 -1.78 8.38 -39.51 -0.33 -2.11 16 18 C 0.11 1.52 7.30 -39.42 -0.29 1.23 16 19 F -0.14 -2.06 17.27 2.25 0.04 -2.02 16 20 C -0.14 -1.75 9.77 -39.49 -0.39 -2.13 16 21 C -0.07 -0.83 6.22 -39.53 -0.25 -1.07 16 22 Br -0.05 -0.53 33.70 -68.01 -2.29 -2.83 16 23 C -0.08 -0.99 9.46 -39.55 -0.37 -1.37 16 24 H 0.10 0.81 6.89 -51.93 -0.36 0.45 16 25 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.10 1.75 6.57 -51.93 -0.34 1.41 16 27 H 0.03 0.47 8.00 -51.93 -0.42 0.06 16 28 H 0.04 0.93 6.33 -51.93 -0.33 0.61 16 29 H -0.01 -0.14 8.12 -51.93 -0.42 -0.56 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.05 0.62 7.90 -51.93 -0.41 0.21 16 32 H 0.08 0.80 6.54 -51.93 -0.34 0.46 16 33 H 0.14 2.13 7.99 -52.49 -0.42 1.71 16 34 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.14 1.46 8.06 -52.49 -0.42 1.03 16 LS Contribution 331.49 15.07 5.00 5.00 Total: -1.00 -28.94 331.49 -8.70 -37.64 By element: Atomic # 1 Polarization: 0.85 SS G_CDS: -3.82 Total: -2.97 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -3.09 Total: -9.69 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 0.49 Total: -40.88 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 35 Polarization: -0.53 SS G_CDS: -2.29 Total: -2.83 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.94 -8.70 -37.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177705237.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.179 kcal (2) G-P(sol) polarization free energy of solvation -28.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds