Wall clock time and date at job start Tue Mar 31 2020 05:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47497 * 27.14128 * 3 2 1 5 5 N 1.46897 * 109.47270 * 174.87551 * 4 3 2 6 6 C 1.46901 * 110.99898 * 199.71242 * 5 4 3 7 7 C 1.50692 * 109.46934 * 66.04927 * 6 5 4 8 8 H 1.07999 * 120.00418 * 359.97438 * 7 6 5 9 9 C 1.37886 * 120.00052 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99557 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00280 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47129 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46973 * 120.00180 * 11 9 7 14 14 H 1.48494 * 109.47229 * 240.00131 * 11 9 7 15 15 C 1.46900 * 110.99727 * 75.75844 * 5 4 3 16 16 C 1.50707 * 109.47111 * 199.75818 * 15 5 4 17 17 C 1.38219 * 119.98491 * 264.44445 * 16 15 5 18 18 C 1.38449 * 119.99577 * 179.97438 * 17 16 15 19 19 F 1.35098 * 120.01936 * 180.02562 * 18 17 16 20 20 C 1.38464 * 119.95494 * 359.97438 * 18 17 16 21 21 C 1.38263 * 119.96732 * 0.02562 * 20 18 17 22 22 Br 1.89098 * 119.99697 * 179.97438 * 21 20 18 23 23 C 1.38212 * 119.97723 * 84.41971 * 16 15 5 24 24 H 1.09002 * 109.47101 * 267.13622 * 3 2 1 25 25 H 1.09001 * 109.46876 * 147.14087 * 3 2 1 26 26 H 1.09004 * 109.47071 * 54.87542 * 4 3 2 27 27 H 1.09001 * 109.47051 * 294.88007 * 4 3 2 28 28 H 1.09003 * 109.47143 * 186.04869 * 6 5 4 29 29 H 1.09003 * 109.47182 * 306.04853 * 6 5 4 30 30 H 0.96996 * 119.99809 * 179.97438 * 10 9 7 31 31 H 1.09002 * 109.47060 * 79.76270 * 15 5 4 32 32 H 1.08993 * 109.47375 * 319.76139 * 15 5 4 33 33 H 1.08002 * 120.00200 * 359.97438 * 17 16 15 34 34 H 1.08001 * 120.01435 * 180.27751 * 20 18 17 35 35 H 1.07993 * 119.98179 * 0.04019 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.2828 -0.6580 5 7 4.5824 -1.2273 -0.7689 6 6 5.0701 -2.1754 -1.7795 7 6 4.5909 -1.7474 -3.1425 8 1 3.9843 -0.8600 -3.2477 9 6 4.9268 -2.4886 -4.2556 10 7 5.6650 -3.5695 -4.1275 11 14 4.3321 -1.9584 -5.9452 12 1 3.5239 -0.7190 -5.8191 13 1 5.5017 -1.6990 -6.8226 14 1 3.4986 -3.0355 -6.5370 15 6 5.2185 -1.4714 0.5325 16 6 6.6303 -0.9445 0.5083 17 6 7.6803 -1.7954 0.2187 18 6 8.9773 -1.3114 0.1959 19 9 10.0039 -2.1425 -0.0876 20 6 9.2213 0.0252 0.4629 21 6 8.1697 0.8748 0.7524 22 35 8.5020 2.7001 1.1178 23 6 6.8742 0.3895 0.7753 24 1 2.9713 0.0522 1.0264 25 1 2.9709 0.8641 -0.5576 26 1 2.6824 -1.3798 -1.6522 27 1 2.8326 -2.1413 -0.0504 28 1 6.1599 -2.1920 -1.7662 29 1 4.6888 -3.1720 -1.5567 30 1 5.9010 -4.0911 -4.9105 31 1 5.2340 -2.5425 0.7341 32 1 4.6542 -0.9627 1.3139 33 1 7.4891 -2.8376 0.0102 34 1 10.2322 0.4046 0.4410 35 1 6.0531 1.0534 1.0017 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177705237.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:54 Heat of formation + Delta-G solvation = -8.012316 kcal Electronic energy + Delta-G solvation = -20698.907207 eV Core-core repulsion = 17270.919398 eV Total energy + Delta-G solvation = -3427.987809 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.028 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.93271 -40.42918 -38.59098 -37.31525 -34.74640 -33.74299 -32.48839 -31.68926 -30.19479 -29.02757 -26.57799 -24.83864 -23.50863 -22.93007 -21.42680 -18.60299 -18.36882 -18.15174 -17.50739 -17.16444 -16.69657 -16.59698 -16.16307 -16.07469 -15.16354 -15.13312 -14.73708 -14.44524 -14.26295 -13.99113 -13.73738 -13.66307 -13.37277 -13.25831 -13.07123 -12.76378 -12.60249 -12.43056 -12.23621 -12.13152 -11.77581 -11.71048 -11.43534 -11.27924 -11.13106 -10.56107 -9.80120 -9.61781 -8.99259 -8.15331 -6.21588 -0.00687 0.13726 0.55897 1.41350 1.44637 1.54752 1.83217 1.91789 2.38632 2.45991 3.07135 3.20151 3.24056 3.62852 3.75438 3.94849 4.09857 4.22286 4.28215 4.30566 4.41685 4.65831 4.69050 4.82207 4.94212 5.04235 5.09488 5.12681 5.16947 5.35880 5.41230 5.49503 5.72603 5.77619 6.13394 6.35106 6.63546 6.71935 6.95976 7.47419 8.95409 Molecular weight = 340.03amu Principal moments of inertia in cm(-1) A = 0.008839 B = 0.004237 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3167.082459 B = 6607.510828 C = 8188.201580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C 0.242 3.758 3 C -0.013 4.013 4 C 0.064 3.936 5 N -0.526 5.526 6 C 0.205 3.795 7 C -0.512 4.512 8 H 0.068 0.932 9 C 0.005 3.995 10 N -0.933 5.933 11 Si 0.952 3.048 12 H -0.261 1.261 13 H -0.285 1.285 14 H -0.286 1.286 15 C 0.084 3.916 16 C -0.033 4.033 17 C -0.138 4.138 18 C 0.085 3.915 19 F -0.146 7.146 20 C -0.132 4.132 21 C -0.072 4.072 22 Br -0.028 7.028 23 C -0.071 4.071 24 H 0.144 0.856 25 H 0.132 0.868 26 H 0.065 0.935 27 H 0.040 0.960 28 H 0.018 0.982 29 H -0.035 1.035 30 H 0.260 0.740 31 H 0.039 0.961 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.154 0.846 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.568 11.579 14.939 20.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.184 5.184 2 C -0.074 4.074 3 C -0.053 4.053 4 C -0.066 4.066 5 N -0.250 5.250 6 C 0.079 3.921 7 C -0.551 4.551 8 H 0.086 0.914 9 C -0.193 4.193 10 N -0.574 5.574 11 Si 0.778 3.222 12 H -0.185 1.185 13 H -0.211 1.211 14 H -0.212 1.212 15 C -0.044 4.044 16 C -0.035 4.035 17 C -0.158 4.158 18 C 0.065 3.935 19 F -0.125 7.125 20 C -0.153 4.153 21 C -0.151 4.151 22 Br 0.058 6.942 23 C -0.092 4.092 24 H 0.162 0.838 25 H 0.150 0.850 26 H 0.083 0.917 27 H 0.059 0.941 28 H 0.036 0.964 29 H -0.018 1.018 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.172 0.828 35 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 5.222 12.577 14.815 20.123 hybrid contribution 0.429 -1.934 -1.356 2.401 sum 5.651 10.643 13.458 18.064 Atomic orbital electron populations 1.81214 1.14959 1.10783 1.11435 1.29682 0.95646 0.91173 0.90929 1.19461 0.78686 1.00963 1.06152 1.21855 0.88170 0.95554 1.00971 1.61913 1.04687 1.52810 1.05559 1.19439 0.95031 0.87950 0.89647 1.21556 1.31432 1.09995 0.92107 0.91354 1.25734 0.95633 0.95144 1.02824 1.70065 1.39074 1.17515 1.30778 0.85590 0.78009 0.78456 0.80152 1.18517 1.21074 1.21173 1.21278 0.90732 0.99409 0.92953 1.19702 0.95033 0.92992 0.95790 1.21347 0.91513 1.01823 1.01093 1.17658 0.84342 0.88471 1.02986 1.91480 1.58052 1.71603 1.91379 1.21107 1.00923 0.91063 1.02182 1.21586 0.95532 0.91933 1.06081 1.96725 1.96319 1.07292 1.93880 1.21257 0.95545 0.94849 0.97501 0.83828 0.84989 0.91680 0.94150 0.96433 1.01755 0.93091 0.94236 0.85592 0.85667 0.82782 0.81536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -15.64 18.54 20.01 0.37 -15.27 16 2 C 0.24 5.90 15.43 89.44 1.38 7.28 16 3 C -0.01 -0.23 5.75 28.79 0.17 -0.06 16 4 C 0.06 1.77 4.75 86.30 0.41 2.18 16 5 N -0.53 -16.81 4.34 -905.36 -3.93 -20.74 16 6 C 0.21 9.35 4.54 85.55 0.39 9.74 16 7 C -0.51 -26.18 8.23 25.60 0.21 -25.96 16 8 H 0.07 3.38 7.31 -2.91 -0.02 3.36 16 9 C 0.00 0.25 5.46 84.66 0.46 0.71 16 10 N -0.93 -53.86 13.29 21.45 0.28 -53.58 16 11 Si 0.95 42.88 29.54 68.60 2.03 44.91 16 12 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 14 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 15 C 0.08 2.03 4.95 85.56 0.42 2.46 16 16 C -0.03 -0.87 5.03 -19.87 -0.10 -0.97 16 17 C -0.14 -4.14 8.38 22.32 0.19 -3.96 16 18 C 0.09 2.49 7.30 22.37 0.16 2.65 16 19 F -0.15 -4.58 17.27 44.97 0.78 -3.81 16 20 C -0.13 -3.24 9.77 22.33 0.22 -3.02 16 21 C -0.07 -1.60 6.22 22.30 0.14 -1.47 16 22 Br -0.03 -0.52 33.70 -20.37 -0.69 -1.20 16 23 C -0.07 -1.55 9.46 22.29 0.21 -1.34 16 24 H 0.14 1.42 6.89 -2.39 -0.02 1.40 16 25 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.06 2.26 6.57 -2.39 -0.02 2.24 16 27 H 0.04 1.06 8.00 -2.39 -0.02 1.04 16 28 H 0.02 0.88 6.33 -2.39 -0.02 0.86 16 29 H -0.04 -1.79 8.12 -2.39 -0.02 -1.81 16 30 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 31 H 0.04 1.04 7.90 -2.39 -0.02 1.02 16 32 H 0.13 1.89 6.54 -2.39 -0.02 1.87 16 33 H 0.13 4.05 7.99 -2.91 -0.02 4.03 16 34 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 35 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -64.80 331.49 4.22 -60.58 By element: Atomic # 1 Polarization: -0.24 SS G_CDS: 1.12 Total: 0.87 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: 4.26 Total: -11.77 kcal Atomic # 7 Polarization: -86.31 SS G_CDS: -3.28 Total: -89.59 kcal Atomic # 9 Polarization: -4.58 SS G_CDS: 0.78 Total: -3.81 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 35 Polarization: -0.52 SS G_CDS: -0.69 Total: -1.20 kcal Total: -64.80 4.22 -60.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177705237.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.568 kcal (2) G-P(sol) polarization free energy of solvation -64.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds