Wall clock time and date at job start Tue Mar 31 2020 06:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38137 * 120.03402 * 2 1 4 4 C 1.38258 * 120.07223 * 180.29909 * 3 2 1 5 5 C 1.38310 * 120.13801 * 359.72269 * 4 3 2 6 6 C 1.38092 * 120.07067 * 0.02562 * 5 4 3 7 7 C 1.38848 * 120.03704 * 179.74705 * 2 1 3 8 8 N 1.39934 * 120.07163 * 359.97438 * 7 2 1 9 9 C 1.34771 * 120.00205 * 154.90761 * 8 7 2 10 10 O 1.21584 * 119.99843 * 354.38176 * 9 8 7 11 11 N 1.34779 * 120.00268 * 174.37431 * 9 8 7 12 12 C 1.39562 * 120.00283 * 180.02562 * 11 9 8 13 13 N 1.32276 * 119.72936 * 0.28977 * 12 11 9 14 14 C 1.31971 * 121.69068 * 180.29003 * 13 12 11 15 15 C 1.38070 * 120.95145 * 359.68372 * 14 13 12 16 16 C 1.38786 * 119.35853 * 0.02562 * 15 14 13 17 17 C 1.38783 * 118.44656 * 0.02562 * 16 15 14 18 18 O 1.35988 * 120.49388 * 179.97438 * 17 16 15 19 19 C 1.42898 * 117.00026 * 359.97438 * 18 17 16 20 20 C 1.53005 * 109.46998 * 180.02562 * 19 18 17 21 21 C 1.50692 * 109.47007 * 180.02562 * 20 19 18 22 22 H 1.08002 * 120.00364 * 359.97438 * 21 20 19 23 23 C 1.37884 * 119.99797 * 180.02562 * 21 20 19 24 24 N 1.31522 * 119.99816 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 120.00230 * 359.97438 * 23 21 20 26 26 H 1.48508 * 109.46933 * 90.00001 * 25 23 21 27 27 H 1.48497 * 109.47613 * 210.00325 * 25 23 21 28 28 H 1.48508 * 109.47102 * 330.00719 * 25 23 21 29 29 H 1.08998 * 109.46925 * 270.24692 * 1 2 3 30 30 H 1.08999 * 109.47638 * 30.25459 * 1 2 3 31 31 H 1.09002 * 109.46965 * 150.24954 * 1 2 3 32 32 H 1.08005 * 119.96763 * 0.02593 * 3 2 1 33 33 H 1.07996 * 119.93188 * 179.74870 * 4 3 2 34 34 H 1.08000 * 119.96258 * 180.02562 * 5 4 3 35 35 H 1.07991 * 120.03633 * 180.02562 * 6 5 4 36 36 H 0.96999 * 119.99752 * 334.91310 * 8 7 2 37 37 H 0.97005 * 119.99640 * 0.02562 * 11 9 8 38 38 H 1.08004 * 119.52478 * 179.70538 * 14 13 12 39 39 H 1.08003 * 120.31820 * 179.97438 * 15 14 13 40 40 H 1.07998 * 120.77640 * 180.02562 * 16 15 14 41 41 H 1.08995 * 109.47499 * 59.99746 * 19 18 17 42 42 H 1.09004 * 109.46731 * 299.99642 * 19 18 17 43 43 H 1.09001 * 109.47012 * 300.00102 * 20 19 18 44 44 H 1.09003 * 109.47192 * 59.99748 * 20 19 18 45 45 H 0.96995 * 119.99785 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1959 0.0000 4 6 3.5810 1.1968 -0.0062 5 6 4.2762 0.0012 -0.0067 6 6 3.5909 -1.1977 -0.0015 7 6 2.2020 -1.2020 0.0053 8 7 1.5046 -2.4152 0.0112 9 6 2.0850 -3.5285 -0.4788 10 8 3.1724 -3.4600 -1.0184 11 7 1.4601 -4.7177 -0.3706 12 6 2.0613 -5.8707 -0.8776 13 7 3.2472 -5.7910 -1.4581 14 6 3.8483 -6.8553 -1.9557 15 6 3.2602 -8.1023 -1.8826 16 6 2.0185 -8.2345 -1.2768 17 6 1.4091 -7.0982 -0.7633 18 8 0.1924 -7.1799 -0.1616 19 6 -0.4105 -8.4735 -0.0900 20 6 -1.7645 -8.3668 0.6145 21 6 -2.4000 -9.7311 0.6906 22 1 -1.8895 -10.5884 0.2773 23 6 -3.6337 -9.8846 1.2868 24 7 -4.1886 -11.0752 1.3527 25 14 -4.5171 -8.4017 2.0008 26 1 -5.3750 -7.7863 0.9564 27 1 -5.3610 -8.8315 3.1446 28 1 -3.5175 -7.4081 2.4689 29 1 -0.3633 0.0044 1.0277 30 1 -0.3634 0.8877 -0.5178 31 1 -0.3633 -0.8922 -0.5100 32 1 1.6584 2.1313 0.0004 33 1 4.1192 2.1331 -0.0103 34 1 5.3562 0.0052 -0.0112 35 1 4.1343 -2.1309 -0.0014 36 1 0.6035 -2.4548 0.3679 37 1 0.5924 -4.7722 0.0596 38 1 4.8145 -6.7493 -2.4266 39 1 3.7611 -8.9663 -2.2936 40 1 1.5377 -9.1990 -1.2066 41 1 0.2388 -9.1465 0.4699 42 1 -0.5554 -8.8630 -1.0977 43 1 -1.6201 -7.9770 1.6221 44 1 -2.4137 -7.6939 0.0542 45 1 -5.0563 -11.1833 1.7724 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188768960.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:24 Heat of formation + Delta-G solvation = 11.840303 kcal Electronic energy + Delta-G solvation = -28275.803145 eV Core-core repulsion = 24259.404235 eV Total energy + Delta-G solvation = -4016.398910 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.31488 -40.37018 -38.87182 -37.91163 -35.20457 -34.88636 -33.48402 -32.78111 -31.74525 -31.04645 -30.02192 -28.92630 -27.05658 -25.69256 -24.21348 -23.05975 -22.66732 -21.57595 -20.97931 -20.55165 -18.84969 -18.48774 -17.89680 -17.10073 -16.61712 -16.18343 -16.08977 -15.83184 -15.58731 -15.01940 -14.85304 -14.38622 -14.30833 -14.10476 -14.06522 -14.02404 -13.67085 -13.29710 -13.13686 -12.68781 -12.61099 -12.39021 -12.24730 -12.10959 -11.66501 -11.43420 -11.29232 -11.04313 -11.00445 -10.61860 -10.40970 -10.23402 -10.19588 -9.97115 -9.48245 -9.32470 -9.19913 -8.87807 -8.72768 -8.21176 -7.75650 -6.23414 -4.25292 1.04455 1.21641 1.29282 1.35960 2.18867 2.95642 3.19153 3.27225 3.29585 3.37471 3.66104 3.69203 3.94691 4.28638 4.51535 4.60211 4.65175 4.87309 4.89900 4.97759 5.03038 5.10211 5.13677 5.22779 5.30569 5.34105 5.38809 5.50407 5.66850 5.71268 5.74880 5.87553 5.95601 6.03401 6.11805 6.18511 6.25108 6.31218 6.34427 6.43271 6.49253 6.66630 6.89914 6.91409 7.07556 7.42784 7.49327 7.61080 8.08115 8.27469 8.36674 8.76800 9.36020 10.88985 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010898 B = 0.002652 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.615893 B =10553.898667 C =12973.884680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.122 4.122 3 C -0.101 4.101 4 C -0.141 4.141 5 C -0.104 4.104 6 C -0.128 4.128 7 C 0.173 3.827 8 N -0.682 5.682 9 C 0.696 3.304 10 O -0.513 6.513 11 N -0.657 5.657 12 C 0.344 3.656 13 N -0.441 5.441 14 C 0.079 3.921 15 C -0.159 4.159 16 C -0.144 4.144 17 C 0.067 3.933 18 O -0.321 6.321 19 C 0.073 3.927 20 C -0.007 4.007 21 C -0.530 4.530 22 H 0.075 0.925 23 C 0.073 3.927 24 N -0.895 5.895 25 Si 0.881 3.119 26 H -0.275 1.275 27 H -0.285 1.285 28 H -0.264 1.264 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.149 0.851 36 H 0.407 0.593 37 H 0.421 0.579 38 H 0.158 0.842 39 H 0.136 0.864 40 H 0.147 0.853 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.028 0.972 44 H 0.023 0.977 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.888 20.018 -3.373 24.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.125 4.125 3 C -0.119 4.119 4 C -0.160 4.160 5 C -0.123 4.123 6 C -0.148 4.148 7 C 0.077 3.923 8 N -0.330 5.330 9 C 0.396 3.604 10 O -0.383 6.383 11 N -0.307 5.307 12 C 0.110 3.890 13 N -0.156 5.156 14 C -0.078 4.078 15 C -0.180 4.180 16 C -0.171 4.171 17 C 0.015 3.985 18 O -0.234 6.234 19 C -0.001 4.001 20 C -0.045 4.045 21 C -0.567 4.567 22 H 0.093 0.907 23 C -0.130 4.130 24 N -0.533 5.533 25 Si 0.708 3.292 26 H -0.201 1.201 27 H -0.211 1.211 28 H -0.188 1.188 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.167 0.833 36 H 0.243 0.757 37 H 0.258 0.742 38 H 0.175 0.825 39 H 0.154 0.846 40 H 0.165 0.835 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.046 0.954 44 H 0.042 0.958 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.957 20.898 -3.743 25.970 hybrid contribution -1.901 -0.586 0.746 2.124 sum 13.056 20.312 -2.997 24.331 Atomic orbital electron populations 1.20732 0.91036 1.03071 1.02366 1.19580 0.96003 0.91687 1.05261 1.20781 0.94168 0.96644 1.00330 1.21085 0.94206 0.98074 1.02680 1.21052 0.99925 0.91910 0.99364 1.21491 0.92469 1.00072 1.00785 1.17369 0.91351 0.83432 1.00148 1.42677 1.19194 1.06538 1.64541 1.15911 0.84579 0.79945 0.79984 1.91002 1.18896 1.83894 1.44539 1.42438 1.23512 1.04271 1.60468 1.17418 0.90720 0.82909 0.97943 1.67605 1.06195 1.32136 1.09650 1.22437 0.99849 0.87240 0.98266 1.21925 0.95716 0.99217 1.01160 1.21629 0.96719 0.98359 1.00346 1.19473 0.88146 0.93018 0.97869 1.86043 1.28356 1.35871 1.73113 1.23148 0.95835 0.80142 1.00925 1.19583 0.89975 0.98892 0.96023 1.20805 1.03875 0.92375 1.39681 0.90705 1.24944 0.96949 0.95957 0.95163 1.69888 1.17242 1.22197 1.43952 0.86749 0.79974 0.83258 0.79190 1.20053 1.21134 1.18831 0.91074 0.91037 0.91807 0.85882 0.86203 0.85887 0.83340 0.75658 0.74187 0.82470 0.84592 0.83496 0.92257 0.92294 0.95400 0.95836 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 9.45 36.01 0.34 -0.48 16 2 C -0.12 -1.18 5.90 -104.43 -0.62 -1.80 16 3 C -0.10 -0.88 9.70 -39.61 -0.38 -1.27 16 4 C -0.14 -1.26 10.04 -39.55 -0.40 -1.66 16 5 C -0.10 -1.06 10.04 -39.61 -0.40 -1.46 16 6 C -0.13 -1.58 8.72 -39.39 -0.34 -1.93 16 7 C 0.17 2.00 6.41 -83.69 -0.54 1.46 16 8 N -0.68 -7.49 4.98 -14.23 -0.07 -7.56 16 9 C 0.70 9.77 8.33 -86.92 -0.72 9.05 16 10 O -0.51 -8.74 11.76 5.29 0.06 -8.68 16 11 N -0.66 -8.96 5.40 -15.68 -0.08 -9.05 16 12 C 0.34 5.35 7.45 -154.45 -1.15 4.20 16 13 N -0.44 -7.01 7.87 -12.23 -0.10 -7.11 16 14 C 0.08 1.01 11.17 -17.55 -0.20 0.82 16 15 C -0.16 -1.86 10.10 -39.44 -0.40 -2.26 16 16 C -0.14 -1.97 9.14 -39.18 -0.36 -2.32 16 17 C 0.07 1.03 6.72 -38.92 -0.26 0.77 16 18 O -0.32 -5.39 9.39 -19.70 -0.18 -5.57 16 19 C 0.07 1.35 4.70 37.16 0.17 1.52 16 20 C -0.01 -0.16 4.41 -27.88 -0.12 -0.28 16 21 C -0.53 -14.10 9.66 -34.44 -0.33 -14.43 16 22 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 23 C 0.07 2.00 5.47 -17.81 -0.10 1.90 16 24 N -0.90 -26.25 13.96 55.43 0.77 -25.48 16 25 Si 0.88 20.46 27.47 -169.99 -4.67 15.79 16 26 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 28 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 31 H 0.06 0.45 6.99 -51.93 -0.36 0.09 16 32 H 0.12 0.80 8.06 -52.48 -0.42 0.37 16 33 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 34 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.15 2.12 5.79 -52.49 -0.30 1.81 16 36 H 0.41 3.31 7.43 -40.82 -0.30 3.00 16 37 H 0.42 4.86 8.07 -40.82 -0.33 4.53 16 38 H 0.16 1.56 8.06 -52.48 -0.42 1.14 16 39 H 0.14 1.17 8.06 -52.48 -0.42 0.74 16 40 H 0.15 1.87 6.44 -52.49 -0.34 1.53 16 41 H 0.06 1.05 7.70 -51.93 -0.40 0.65 16 42 H 0.06 1.04 7.70 -51.93 -0.40 0.64 16 43 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 44 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 45 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 376.67 15.07 5.68 5.68 Total: -1.00 -33.01 376.67 -10.14 -43.15 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -5.75 Total: 7.00 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -5.80 Total: -8.17 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: 0.52 Total: -49.20 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.12 Total: -14.25 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.67 Total: 15.79 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.01 -10.14 -43.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188768960.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.991 kcal (2) G-P(sol) polarization free energy of solvation -33.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds