Wall clock time and date at job start Tue Mar 31 2020 05:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39341 * 119.12833 * 2 1 4 4 C 1.36579 * 119.93532 * 180.02562 * 3 2 1 5 5 C 1.40767 * 118.15121 * 0.02562 * 4 3 2 6 6 C 1.40430 * 121.38492 * 180.02562 * 5 4 3 7 7 C 1.36135 * 119.61525 * 179.97438 * 6 5 4 8 8 C 1.50700 * 119.56340 * 180.02562 * 7 6 5 9 9 N 1.46901 * 109.47290 * 90.87719 * 8 7 6 10 10 C 1.46896 * 111.00307 * 192.19809 * 9 8 7 11 11 C 1.50692 * 109.47579 * 173.97222 * 10 9 8 12 12 H 1.08008 * 119.99745 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00372 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00106 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00208 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47135 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47350 * 119.99459 * 15 13 11 18 18 H 1.48498 * 109.47044 * 239.99902 * 15 13 11 19 19 C 1.46898 * 111.00177 * 68.23783 * 9 8 7 20 20 C 1.52999 * 109.46904 * 55.44840 * 19 9 8 21 21 H 1.08998 * 110.75448 * 309.01977 * 20 19 9 22 22 C 1.55565 * 110.84057 * 185.34400 * 20 19 9 23 23 C 1.54944 * 100.82937 * 207.68560 * 22 20 19 24 24 O 1.43648 * 105.21995 * 36.43904 * 23 22 20 25 25 C 1.43231 * 109.97581 * 335.52461 * 24 23 22 26 26 C 1.39361 * 120.87239 * 0.27874 * 7 6 5 27 27 C 1.36074 * 121.06057 * 359.45215 * 26 7 6 28 28 C 1.40593 * 119.74788 * 0.51782 * 27 26 7 29 29 N 1.31082 * 119.12770 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.46815 * 269.97930 * 1 2 3 31 31 H 1.09000 * 109.46956 * 29.97479 * 1 2 3 32 32 H 1.08991 * 109.47000 * 149.97881 * 1 2 3 33 33 H 1.08000 * 120.02787 * 0.02562 * 3 2 1 34 34 H 1.07993 * 120.92299 * 179.97438 * 4 3 2 35 35 H 1.08004 * 120.19237 * 0.02562 * 6 5 4 36 36 H 1.08999 * 109.47078 * 330.87233 * 8 7 6 37 37 H 1.09001 * 109.46934 * 210.86985 * 8 7 6 38 38 H 1.09006 * 109.47094 * 293.97589 * 10 9 8 39 39 H 1.09000 * 109.47122 * 53.96907 * 10 9 8 40 40 H 0.96997 * 120.00078 * 180.02562 * 14 13 11 41 41 H 1.08997 * 109.47492 * 295.45001 * 19 9 8 42 42 H 1.09001 * 109.47026 * 175.44300 * 19 9 8 43 43 H 1.08999 * 111.22452 * 89.78216 * 22 20 19 44 44 H 1.09006 * 111.13149 * 325.54311 * 22 20 19 45 45 H 1.08997 * 110.30795 * 277.47592 * 23 22 20 46 46 H 1.08998 * 110.31002 * 155.40636 * 23 22 20 47 47 H 1.08995 * 109.83100 * 121.22228 * 25 24 23 48 48 H 1.08997 * 109.83393 * 242.20259 * 25 24 23 49 49 H 1.07999 * 119.46745 * 179.72571 * 26 7 6 50 50 H 1.08006 * 120.12265 * 180.25397 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2172 0.0000 4 6 3.5510 1.2364 -0.0005 5 6 4.2325 0.0047 -0.0016 6 6 5.6355 -0.0547 -0.0017 7 6 6.2576 -1.2656 -0.0022 8 6 7.7633 -1.3281 -0.0017 9 7 8.2512 -1.3705 1.3833 10 6 9.7011 -1.1414 1.4379 11 6 10.1406 -1.0445 2.8761 12 1 9.4152 -1.1429 3.6702 13 6 11.4685 -0.8294 3.1782 14 7 12.3518 -0.7092 2.2113 15 14 12.0134 -0.7100 4.9611 16 1 10.8363 -0.8784 5.8508 17 1 13.0073 -1.7756 5.2474 18 1 12.6295 0.6194 5.2024 19 6 7.8941 -2.6409 2.0286 20 6 8.4243 -3.8055 1.1900 21 1 8.1232 -3.6996 0.1478 22 6 7.9495 -5.1678 1.7720 23 6 9.0956 -6.0997 1.3039 24 8 10.2891 -5.3059 1.3976 25 6 9.9597 -3.9147 1.3098 26 6 5.5203 -2.4483 -0.0085 27 6 4.1598 -2.4275 -0.0032 28 6 3.4809 -1.1963 -0.0021 29 7 2.1451 -1.1450 -0.0005 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3633 -0.8897 -0.5141 33 1 1.6316 2.1444 0.0004 34 1 4.0928 2.1706 -0.0010 35 1 6.2177 0.8550 -0.0005 36 1 8.1637 -0.4459 -0.5012 37 1 8.0899 -2.2241 -0.5294 38 1 10.2184 -1.9705 0.9550 39 1 9.9420 -0.2125 0.9211 40 1 13.2861 -0.5581 2.4238 41 1 6.8097 -2.7153 2.1092 42 1 8.3361 -2.6794 3.0243 43 1 6.9957 -5.4706 1.3399 44 1 7.8921 -5.1318 2.8599 45 1 8.9304 -6.4143 0.2735 46 1 9.1671 -6.9691 1.9575 47 1 10.2982 -3.3972 2.2073 48 1 10.4312 -3.4779 0.4295 49 1 6.0372 -3.3965 -0.0133 50 1 3.6035 -3.3533 -0.0041 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225477380.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:03 Heat of formation + Delta-G solvation = 17.322929 kcal Electronic energy + Delta-G solvation = -29841.191579 eV Core-core repulsion = 26026.289419 eV Total energy + Delta-G solvation = -3814.902160 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.88770 -39.51423 -37.88494 -36.24992 -33.52379 -32.91010 -32.32901 -31.53820 -30.19892 -29.01909 -28.47166 -27.01045 -25.77708 -23.94076 -23.80296 -22.05370 -21.99219 -21.64297 -20.95848 -19.43745 -18.00413 -16.82288 -16.52530 -16.29839 -16.19609 -15.48942 -15.02883 -14.78685 -14.59266 -14.38757 -14.32059 -14.24620 -14.03316 -13.64045 -13.12233 -13.03761 -12.98389 -12.87195 -12.66972 -12.38934 -12.34315 -11.66891 -11.54946 -11.45659 -11.40596 -11.32578 -11.00639 -10.94344 -10.88258 -10.70124 -10.57972 -10.54128 -10.25535 -10.00953 -9.85694 -9.51659 -9.25994 -8.94153 -8.60101 -8.45506 -8.08414 -7.26528 -6.08447 -4.09319 0.43974 0.82805 2.05857 2.90936 3.28938 3.37376 3.40793 4.09714 4.12128 4.36555 4.39862 4.52457 4.68086 4.74913 4.78965 4.85860 5.05354 5.06850 5.18570 5.22220 5.27482 5.29614 5.30922 5.37249 5.38170 5.43621 5.53507 5.60034 5.72004 5.73419 5.85684 5.88417 5.90746 5.95278 6.04328 6.05184 6.12008 6.19613 6.22442 6.34449 6.37754 6.40896 6.57165 6.71052 6.78107 6.92339 6.94215 7.20795 7.26937 7.56156 7.72617 7.91624 7.99201 8.10826 8.45215 8.97795 9.54808 11.01750 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012282 B = 0.003128 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.171060 B = 8949.801725 C =10466.308140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.148 3.852 3 C -0.180 4.180 4 C -0.052 4.052 5 C -0.103 4.103 6 C -0.080 4.080 7 C -0.058 4.058 8 C 0.080 3.920 9 N -0.525 5.525 10 C 0.172 3.828 11 C -0.508 4.508 12 H 0.063 0.937 13 C 0.060 3.940 14 N -0.893 5.893 15 Si 0.892 3.108 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.071 3.929 20 C -0.158 4.158 21 H 0.077 0.923 22 C -0.148 4.148 23 C 0.051 3.949 24 O -0.393 6.393 25 C 0.052 3.948 26 C -0.085 4.085 27 C -0.103 4.103 28 C 0.128 3.872 29 N -0.478 5.478 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.133 0.867 34 H 0.138 0.862 35 H 0.131 0.869 36 H 0.078 0.922 37 H 0.042 0.958 38 H 0.017 0.983 39 H 0.028 0.972 40 H 0.261 0.739 41 H 0.059 0.941 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.050 0.950 46 H 0.075 0.925 47 H 0.108 0.892 48 H 0.065 0.935 49 H 0.126 0.874 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.604 -1.488 -6.294 19.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.006 4.006 3 C -0.200 4.200 4 C -0.078 4.078 5 C -0.105 4.105 6 C -0.099 4.099 7 C -0.059 4.059 8 C -0.048 4.048 9 N -0.248 5.248 10 C 0.048 3.952 11 C -0.547 4.547 12 H 0.081 0.919 13 C -0.142 4.142 14 N -0.532 5.532 15 Si 0.720 3.280 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.211 1.211 19 C -0.058 4.058 20 C -0.178 4.178 21 H 0.096 0.904 22 C -0.186 4.186 23 C -0.025 4.025 24 O -0.313 6.313 25 C -0.023 4.023 26 C -0.105 4.105 27 C -0.122 4.122 28 C 0.007 3.993 29 N -0.187 5.187 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.151 0.849 34 H 0.156 0.844 35 H 0.149 0.851 36 H 0.097 0.903 37 H 0.060 0.940 38 H 0.034 0.966 39 H 0.046 0.954 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.108 0.892 43 H 0.093 0.907 44 H 0.097 0.903 45 H 0.068 0.932 46 H 0.093 0.907 47 H 0.126 0.874 48 H 0.083 0.917 49 H 0.144 0.856 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -18.781 -1.975 -6.037 19.826 hybrid contribution 1.100 0.425 0.430 1.255 sum -17.681 -1.550 -5.607 18.613 Atomic orbital electron populations 1.20740 0.88962 1.03351 1.03082 1.21408 0.96926 0.88354 0.93867 1.21639 0.95056 0.99039 1.04238 1.21494 0.94381 0.97471 0.94414 1.18847 0.94891 0.93857 1.02869 1.20859 0.91954 0.98443 0.98643 1.19724 0.96449 0.92587 0.97113 1.21180 0.89503 1.01415 0.92713 1.62385 1.18876 1.31028 1.12493 1.20216 0.79983 0.96947 0.98096 1.21110 0.92657 1.49092 0.91817 0.91892 1.24938 0.96690 0.95314 0.97251 1.69945 1.02401 1.49335 1.31478 0.86528 0.78729 0.77627 0.85112 1.19678 1.21005 1.21063 1.22146 0.98933 0.85759 0.98926 1.23537 0.96804 0.96493 1.00985 0.90446 1.23284 0.98487 0.94937 1.01918 1.23230 0.85138 0.94607 0.99565 1.88419 1.29840 1.18009 1.95036 1.23852 0.93409 0.80752 1.04266 1.20923 0.93499 0.98448 0.97646 1.20669 0.93842 0.96223 1.01450 1.18792 0.88844 0.93053 0.98660 1.67817 1.08632 1.28752 1.13493 0.90374 0.90739 0.90529 0.84894 0.84400 0.85064 0.90329 0.93986 0.96601 0.95401 0.92881 0.92222 0.89214 0.90736 0.90282 0.93218 0.90654 0.87393 0.91683 0.85591 0.85130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 10.14 36.01 0.37 -0.43 16 2 C 0.15 1.68 6.78 -82.50 -0.56 1.12 16 3 C -0.18 -1.83 9.64 -39.77 -0.38 -2.21 16 4 C -0.05 -0.59 9.90 -39.23 -0.39 -0.98 16 5 C -0.10 -1.42 5.74 -106.80 -0.61 -2.03 16 6 C -0.08 -1.12 9.38 -39.51 -0.37 -1.49 16 7 C -0.06 -0.85 4.93 -104.96 -0.52 -1.37 16 8 C 0.08 1.30 4.84 -4.98 -0.02 1.27 16 9 N -0.53 -10.19 4.71 -237.52 -1.12 -11.30 16 10 C 0.17 4.04 4.17 -4.98 -0.02 4.01 16 11 C -0.51 -13.19 7.00 -34.45 -0.24 -13.44 16 12 H 0.06 1.65 6.88 -52.48 -0.36 1.29 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.89 -25.23 13.29 55.43 0.74 -24.49 16 15 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 16 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 C 0.07 1.25 4.31 -3.83 -0.02 1.24 16 20 C -0.16 -2.54 2.17 -88.53 -0.19 -2.73 16 21 H 0.08 1.18 4.90 -51.93 -0.25 0.92 16 22 C -0.15 -2.00 6.64 -24.34 -0.16 -2.17 16 23 C 0.05 0.74 7.77 38.18 0.30 1.04 16 24 O -0.39 -7.58 11.36 -35.23 -0.40 -7.98 16 25 C 0.05 1.03 5.42 37.89 0.21 1.24 16 26 C -0.09 -1.13 7.96 -39.94 -0.32 -1.45 16 27 C -0.10 -1.38 9.98 -39.47 -0.39 -1.77 16 28 C 0.13 1.85 6.60 -84.86 -0.56 1.29 16 29 N -0.48 -6.66 10.24 -7.22 -0.07 -6.73 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.13 1.73 8.06 -52.48 -0.42 1.31 16 36 H 0.08 1.28 7.86 -51.93 -0.41 0.87 16 37 H 0.04 0.66 5.55 -51.93 -0.29 0.38 16 38 H 0.02 0.40 3.93 -51.93 -0.20 0.19 16 39 H 0.03 0.72 7.99 -51.93 -0.41 0.31 16 40 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.06 0.98 6.47 -51.93 -0.34 0.64 16 42 H 0.09 1.79 6.15 -51.93 -0.32 1.47 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.08 1.08 8.04 -51.93 -0.42 0.66 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 47 H 0.11 2.49 5.56 -51.93 -0.29 2.21 16 48 H 0.07 1.37 6.78 -51.93 -0.35 1.02 16 49 H 0.13 1.52 6.55 -52.49 -0.34 1.18 16 50 H 0.13 1.53 8.06 -52.48 -0.42 1.11 16 LS Contribution 385.27 15.07 5.81 5.81 Total: -1.00 -30.13 385.27 -11.41 -41.54 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -7.35 Total: 4.43 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -3.99 Total: -17.33 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: -0.46 Total: -42.53 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -0.40 Total: -7.98 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.13 -11.41 -41.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225477380.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.864 kcal (2) G-P(sol) polarization free energy of solvation -30.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds