Wall clock time and date at job start Tue Mar 31 2020 05:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47299 * 2 1 4 4 H 1.08994 * 109.46956 * 55.00050 * 3 2 1 5 5 N 1.46496 * 109.46975 * 295.00505 * 3 2 1 6 6 C 1.34773 * 120.00649 * 84.99486 * 5 3 2 7 7 S 1.71208 * 119.99482 * 0.02562 * 6 5 3 8 8 N 1.34776 * 120.00408 * 179.97438 * 6 5 3 9 9 C 1.39145 * 119.99528 * 174.26512 * 8 6 5 10 10 C 1.39500 * 119.83990 * 319.00048 * 9 8 6 11 11 C 1.36364 * 120.16511 * 179.76042 * 10 9 8 12 12 C 1.40873 * 119.82890 * 0.53996 * 11 10 9 13 13 C 1.41142 * 120.15821 * 179.69714 * 12 11 10 14 14 H 1.08008 * 119.99766 * 205.27681 * 13 12 11 15 15 C 1.39883 * 120.00613 * 25.27452 * 13 12 11 16 16 N 1.30884 * 119.99400 * 16.90545 * 15 13 12 17 17 Si 1.86799 * 120.00401 * 196.91096 * 15 13 12 18 18 H 1.48490 * 109.47358 * 59.99679 * 17 15 13 19 19 H 1.48496 * 109.47223 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.46706 * 299.99847 * 17 15 13 21 21 C 1.40875 * 119.68190 * 359.71491 * 12 11 10 22 22 C 1.36363 * 119.82758 * 0.02562 * 21 12 11 23 23 C 1.50699 * 109.47188 * 175.00191 * 3 2 1 24 24 C 1.38236 * 119.99809 * 79.72900 * 23 3 2 25 25 C 1.38237 * 119.99471 * 179.78926 * 24 23 3 26 26 C 1.38237 * 119.99991 * 0.43618 * 25 24 23 27 27 C 1.38225 * 120.00307 * 359.81668 * 26 25 24 28 28 C 1.38234 * 119.99865 * 359.97438 * 27 26 25 29 29 H 1.09005 * 109.46811 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47592 * 59.99948 * 1 2 3 31 31 H 1.08998 * 109.46949 * 299.99351 * 1 2 3 32 32 H 1.08994 * 109.47524 * 120.00427 * 2 1 3 33 33 H 1.09006 * 109.47249 * 240.00086 * 2 1 3 34 34 H 0.97008 * 119.99695 * 264.99496 * 5 3 2 35 35 H 0.96997 * 120.00219 * 354.27270 * 8 6 5 36 36 H 1.07997 * 119.92251 * 359.97438 * 10 9 8 37 37 H 1.08005 * 120.08321 * 180.25197 * 11 10 9 38 38 H 0.97005 * 119.99900 * 180.02562 * 16 15 13 39 39 H 1.07993 * 120.08569 * 179.97438 * 21 12 11 40 40 H 1.07997 * 119.91980 * 179.97438 * 22 21 12 41 41 H 1.08000 * 120.00097 * 359.97438 * 24 23 3 42 42 H 1.07998 * 119.99877 * 180.27377 * 25 24 23 43 43 H 1.07997 * 119.99398 * 179.83888 * 26 25 24 44 44 H 1.07999 * 120.00658 * 179.97438 * 27 26 25 45 45 H 1.08002 * 120.00338 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6524 2.0975 -1.2517 6 6 0.4351 2.6644 -1.3669 7 16 -0.6581 2.6196 -0.0500 8 7 0.0787 3.2674 -2.5184 9 6 -1.2174 3.7471 -2.6802 10 6 -2.2984 2.9950 -2.2199 11 6 -3.5710 3.4610 -2.3707 12 6 -3.7933 4.6999 -3.0033 13 6 -5.1080 5.1859 -3.1688 14 1 -5.3314 5.8782 -3.9672 15 6 -6.1219 4.7709 -2.2989 16 7 -5.8151 4.2126 -1.1555 17 14 -7.9134 5.0134 -2.7691 18 1 -8.1984 4.2796 -4.0281 19 1 -8.7845 4.4937 -1.6845 20 1 -8.1814 6.4605 -2.9680 21 6 -2.6970 5.4512 -3.4704 22 6 -1.4297 4.9749 -3.3078 23 6 3.5419 1.4443 0.1238 24 6 4.3272 1.1975 -0.9868 25 6 5.7050 1.2035 -0.8741 26 6 6.2972 1.4473 0.3510 27 6 5.5118 1.6888 1.4625 28 6 4.1342 1.6872 1.3490 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 2.2719 2.1232 -1.9978 35 1 0.7256 3.3669 -3.2342 36 1 -2.1268 2.0430 -1.7398 37 1 -4.4068 2.8796 -2.0101 38 1 -6.5181 3.9245 -0.5524 39 1 -2.8599 6.4016 -3.9568 40 1 -0.5882 5.5494 -3.6657 41 1 3.8644 1.0030 -1.9430 42 1 6.3186 1.0150 -1.7426 43 1 7.3735 1.4493 0.4395 44 1 5.9745 1.8789 2.4198 45 1 3.5205 1.8755 2.2175 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225479871.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:06 Heat of formation + Delta-G solvation = 71.711770 kcal Electronic energy + Delta-G solvation = -25990.322920 eV Core-core repulsion = 22484.699013 eV Total energy + Delta-G solvation = -3505.623907 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.17637 -38.91025 -37.49111 -35.65479 -33.51338 -32.09422 -31.25349 -31.19528 -29.52316 -28.93870 -26.43547 -24.82811 -23.66519 -22.70759 -22.27445 -21.41276 -20.96228 -20.33046 -18.22242 -17.51156 -17.32956 -16.65955 -15.79999 -15.44166 -15.29952 -14.95200 -14.90165 -14.64261 -13.96558 -13.74998 -13.68037 -13.58308 -13.11183 -12.78924 -12.59658 -12.17907 -12.09936 -12.00052 -11.78605 -11.46185 -11.38359 -11.23281 -11.09001 -11.00045 -10.89638 -10.81833 -10.52779 -10.23651 -9.89154 -9.65359 -9.33297 -9.23704 -9.05069 -8.82653 -7.66876 -7.27268 -6.79139 -6.66220 -6.13592 -4.31903 0.99617 1.08449 1.75490 2.48761 2.84206 3.06997 3.08278 3.10343 3.16168 3.27774 3.50269 3.92600 4.01294 4.33089 4.56116 4.63534 4.68083 4.80928 5.06817 5.15911 5.20956 5.27041 5.46691 5.66580 5.69177 5.70693 5.80936 5.95613 6.07371 6.12574 6.19556 6.21889 6.26087 6.37432 6.39792 6.51807 6.64411 6.67602 6.97775 7.02658 7.05184 7.13948 7.24333 7.32583 7.61735 7.68859 7.96112 8.06441 8.21313 8.28742 8.64783 8.87489 8.98113 10.17233 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.025855 B = 0.002411 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.686075 B =11611.225480 C =12172.586990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C 0.190 3.810 4 H 0.122 0.878 5 N -0.694 5.694 6 C 0.535 3.465 7 S -0.617 6.617 8 N -0.593 5.593 9 C -0.037 4.037 10 C -0.039 4.039 11 C -0.164 4.164 12 C 0.119 3.881 13 C -0.453 4.453 14 H 0.078 0.922 15 C 0.073 3.927 16 N -0.774 5.774 17 Si 0.909 3.091 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.265 1.265 21 C -0.226 4.226 22 C -0.082 4.082 23 C -0.088 4.088 24 C -0.117 4.117 25 C -0.118 4.118 26 C -0.122 4.122 27 C -0.116 4.116 28 C -0.103 4.103 29 H 0.032 0.968 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.388 0.612 35 H 0.388 0.612 36 H 0.111 0.889 37 H 0.120 0.880 38 H 0.284 0.716 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.118 0.882 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.622 -7.547 0.710 21.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C 0.085 3.915 4 H 0.140 0.860 5 N -0.327 5.327 6 C 0.178 3.822 7 S -0.488 6.488 8 N -0.212 5.212 9 C -0.129 4.129 10 C -0.060 4.060 11 C -0.185 4.185 12 C 0.116 3.884 13 C -0.482 4.482 14 H 0.097 0.903 15 C -0.147 4.147 16 N -0.398 5.398 17 Si 0.733 3.267 18 H -0.188 1.188 19 H -0.202 1.202 20 H -0.190 1.190 21 C -0.247 4.247 22 C -0.102 4.102 23 C -0.089 4.089 24 C -0.136 4.136 25 C -0.136 4.136 26 C -0.140 4.140 27 C -0.134 4.134 28 C -0.122 4.122 29 H 0.051 0.949 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.225 0.775 35 H 0.224 0.776 36 H 0.129 0.871 37 H 0.138 0.862 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.104 0.896 41 H 0.136 0.864 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.142 0.858 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 18.712 -7.681 1.930 20.319 hybrid contribution 0.569 0.298 -1.479 1.613 sum 19.281 -7.383 0.451 20.651 Atomic orbital electron populations 1.22376 0.93087 0.99602 1.05409 1.21911 0.98298 0.93923 1.01682 1.20228 0.89105 0.94731 0.87474 0.86008 1.44909 1.13839 1.56967 1.17012 1.22420 0.86849 0.82981 0.89950 1.93282 1.50396 1.77288 1.27796 1.41979 1.13184 1.53635 1.12408 1.16888 0.80232 0.98422 1.17396 1.20502 0.91632 0.98779 0.95111 1.20873 0.95105 0.96941 1.05568 1.17707 0.92381 0.90265 0.88020 1.19581 0.92767 1.23555 1.12261 0.90346 1.25977 1.01746 0.93136 0.93792 1.69879 1.35861 1.28121 1.05950 0.86356 0.81273 0.79735 0.79331 1.18777 1.20241 1.18992 1.20466 0.91810 1.00414 1.11989 1.19986 0.96513 0.92942 1.00784 1.20023 0.94808 0.99847 0.94191 1.20939 0.93891 1.00616 0.98138 1.21120 0.94622 1.00045 0.97770 1.21180 0.99897 0.99955 0.92976 1.21172 0.93670 0.99741 0.98821 1.21073 0.94964 0.98989 0.97151 0.94873 0.91873 0.89696 0.91129 0.92683 0.77510 0.77643 0.87122 0.86202 0.90522 0.88685 0.89613 0.86444 0.86032 0.86086 0.85793 0.85365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 8.09 37.16 0.30 -1.88 16 2 C -0.12 -1.39 5.59 -26.73 -0.15 -1.54 16 3 C 0.19 2.23 2.41 -69.08 -0.17 2.07 16 4 H 0.12 1.72 6.68 -51.93 -0.35 1.37 16 5 N -0.69 -8.56 4.98 -56.65 -0.28 -8.85 16 6 C 0.54 8.98 6.47 -86.92 -0.56 8.42 16 7 S -0.62 -13.12 19.71 -107.50 -2.12 -15.24 16 8 N -0.59 -9.99 5.29 -11.28 -0.06 -10.05 16 9 C -0.04 -0.79 5.94 -83.59 -0.50 -1.28 16 10 C -0.04 -0.93 7.76 -39.79 -0.31 -1.24 16 11 C -0.16 -4.31 8.63 -39.26 -0.34 -4.65 16 12 C 0.12 3.15 5.57 -106.80 -0.59 2.55 16 13 C -0.45 -11.83 9.04 -37.87 -0.34 -12.17 16 14 H 0.08 1.94 7.90 -52.48 -0.41 1.53 16 15 C 0.07 1.84 5.15 -17.34 -0.09 1.75 16 16 N -0.77 -20.32 10.94 55.54 0.61 -19.71 16 17 Si 0.91 18.51 29.59 -169.99 -5.03 13.48 16 18 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 19 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 20 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 21 C -0.23 -5.42 9.74 -39.26 -0.38 -5.81 16 22 C -0.08 -1.76 9.90 -39.78 -0.39 -2.16 16 23 C -0.09 -0.87 4.95 -104.62 -0.52 -1.39 16 24 C -0.12 -1.02 9.05 -39.58 -0.36 -1.38 16 25 C -0.12 -0.92 10.05 -39.58 -0.40 -1.31 16 26 C -0.12 -0.93 10.05 -39.59 -0.40 -1.33 16 27 C -0.12 -0.94 10.05 -39.59 -0.40 -1.34 16 28 C -0.10 -0.97 9.67 -39.58 -0.38 -1.35 16 29 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 1.09 5.29 -44.24 -0.23 0.85 16 31 H 0.08 1.42 6.49 -47.94 -0.31 1.11 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.39 3.71 6.91 -40.82 -0.28 3.43 16 35 H 0.39 5.04 8.84 -40.82 -0.36 4.68 16 36 H 0.11 2.66 6.17 -47.29 -0.29 2.37 16 37 H 0.12 3.30 6.17 -52.48 -0.32 2.97 16 38 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 39 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 40 H 0.09 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.12 0.86 6.93 -52.49 -0.36 0.49 16 42 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 43 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 44 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 45 H 0.13 1.09 8.04 -52.49 -0.42 0.67 16 LS Contribution 372.37 15.07 5.61 5.61 Total: -1.00 -30.39 372.37 -13.12 -43.51 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -5.87 Total: 15.26 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -5.98 Total: -24.03 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.27 Total: -38.60 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Atomic # 16 Polarization: -13.12 SS G_CDS: -2.12 Total: -15.24 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.39 -13.12 -43.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225479871.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.222 kcal (2) G-P(sol) polarization free energy of solvation -30.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds