Wall clock time and date at job start Tue Mar 31 2020 05:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38259 * 119.99874 * 2 1 4 4 C 1.38212 * 119.99752 * 179.97438 * 3 2 1 5 5 C 1.38256 * 120.00171 * 359.97438 * 4 3 2 6 6 C 1.38208 * 120.00154 * 0.02562 * 5 4 3 7 7 C 1.38217 * 120.00097 * 179.72553 * 2 1 3 8 8 C 1.50694 * 120.00042 * 0.02562 * 7 2 1 9 9 H 1.09003 * 109.47477 * 30.40042 * 8 7 2 10 10 C 1.53004 * 109.46889 * 270.40434 * 8 7 2 11 11 N 1.46502 * 109.47606 * 150.40596 * 8 7 2 12 12 C 1.34776 * 120.00452 * 208.17549 * 11 8 7 13 13 S 1.71200 * 119.99719 * 359.97438 * 12 11 8 14 14 N 1.34769 * 119.99862 * 179.97438 * 12 11 8 15 15 C 1.39143 * 119.99567 * 184.77173 * 14 12 11 16 16 C 1.39508 * 119.84099 * 314.59005 * 15 14 12 17 17 C 1.36360 * 120.16547 * 179.76213 * 16 15 14 18 18 C 1.40872 * 119.83366 * 0.52829 * 17 16 15 19 19 C 1.41137 * 120.16291 * 179.69530 * 18 17 16 20 20 H 1.08000 * 120.00701 * 210.04289 * 19 18 17 21 21 C 1.39890 * 119.99659 * 30.05169 * 19 18 17 22 22 N 1.30885 * 120.00256 * 8.89303 * 21 19 18 23 23 Si 1.86801 * 119.99696 * 188.89344 * 21 19 18 24 24 H 1.48499 * 109.47546 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.46994 * 119.99985 * 23 21 19 26 26 H 1.48506 * 109.46849 * 239.99943 * 23 21 19 27 27 C 1.40882 * 119.67681 * 359.72503 * 18 17 16 28 28 C 1.36358 * 119.82918 * 359.97438 * 27 18 17 29 29 H 1.08995 * 109.46989 * 90.00299 * 1 2 3 30 30 H 1.08996 * 109.47002 * 329.99735 * 1 2 3 31 31 H 1.09001 * 109.46727 * 210.00091 * 1 2 3 32 32 H 1.07995 * 119.99968 * 359.97438 * 3 2 1 33 33 H 1.08002 * 119.99900 * 180.02562 * 4 3 2 34 34 H 1.08003 * 120.00134 * 180.02562 * 5 4 3 35 35 H 1.08002 * 120.00166 * 180.02562 * 6 5 4 36 36 H 1.08997 * 109.47134 * 299.99924 * 10 8 7 37 37 H 1.08997 * 109.47090 * 60.00303 * 10 8 7 38 38 H 1.09007 * 109.46815 * 180.02562 * 10 8 7 39 39 H 0.97009 * 119.99655 * 28.17179 * 11 8 7 40 40 H 0.97003 * 120.00677 * 4.77839 * 14 12 11 41 41 H 1.08001 * 119.91626 * 359.97438 * 16 15 14 42 42 H 1.08001 * 120.08103 * 180.25485 * 17 16 15 43 43 H 0.96992 * 119.99840 * 179.97438 * 22 21 19 44 44 H 1.07997 * 120.08350 * 179.97438 * 27 18 17 45 45 H 1.07997 * 119.91292 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0016 6 6 3.5807 -1.1969 0.0016 7 6 2.1981 -1.1970 0.0057 8 6 1.4446 -2.5020 0.0114 9 1 0.4955 -2.3760 -0.5096 10 6 1.1803 -2.9320 1.4558 11 7 2.2408 -3.5286 -0.6657 12 6 1.6282 -4.5571 -1.2848 13 16 -0.0804 -4.6643 -1.2795 14 7 2.3607 -5.5012 -1.9081 15 6 1.7281 -6.5078 -2.6311 16 6 0.6272 -7.1678 -2.0847 17 6 -0.0008 -8.1520 -2.7894 18 6 0.4717 -8.5093 -4.0676 19 6 -0.1690 -9.5313 -4.8003 20 1 0.3979 -10.1366 -5.4921 21 6 -1.5386 -9.7602 -4.6306 22 7 -2.2602 -8.9227 -3.9298 23 14 -2.3375 -11.2611 -5.4041 24 1 -1.3124 -12.0435 -6.1404 25 1 -2.9364 -12.1066 -4.3403 26 1 -3.3991 -10.8261 -6.3471 27 6 1.5873 -7.8419 -4.6105 28 6 2.2012 -6.8556 -3.8967 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 0.8899 0.5139 31 1 -0.3633 -0.8900 0.5139 32 1 1.6583 2.1326 -0.0004 33 1 4.1204 2.1327 0.0010 34 1 5.3517 0.0000 0.0024 35 1 4.1207 -2.1322 0.0029 36 1 2.1293 -3.0581 1.9768 37 1 0.5879 -2.1683 1.9596 38 1 0.6357 -3.8762 1.4599 39 1 3.2090 -3.4681 -0.6685 40 1 3.3289 -5.4791 -1.8527 41 1 0.2692 -6.8963 -1.1026 42 1 -0.8555 -8.6592 -2.3669 43 1 -3.2099 -9.0813 -3.8125 44 1 1.9553 -8.1108 -5.5896 45 1 3.0568 -6.3434 -4.3114 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225753039.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:43 Heat of formation + Delta-G solvation = 65.835286 kcal Electronic energy + Delta-G solvation = -25783.592054 eV Core-core repulsion = 22277.713324 eV Total energy + Delta-G solvation = -3505.878730 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.32339 -38.94676 -37.38208 -35.49182 -33.53671 -33.02854 -31.58178 -29.62977 -29.50452 -28.71363 -27.16691 -25.24019 -24.01688 -23.61208 -21.89908 -21.23531 -20.96216 -20.33406 -18.24168 -17.45529 -17.30393 -16.38686 -15.99065 -15.32763 -15.20332 -14.99050 -14.60131 -14.51331 -14.01804 -13.88547 -13.62789 -13.40082 -13.35964 -12.73991 -12.56492 -12.40573 -12.25594 -12.09543 -12.05407 -11.82124 -11.65125 -11.35803 -11.29336 -11.09360 -10.86111 -10.80668 -10.57258 -10.42711 -9.85490 -9.67903 -9.30642 -9.11616 -8.93327 -8.79527 -7.65901 -7.32573 -7.01230 -6.69645 -6.20234 -4.33728 1.03343 1.08750 1.75678 2.43933 2.80124 3.03181 3.10502 3.15070 3.16453 3.26857 3.47180 3.95021 3.97216 4.34214 4.52868 4.62856 4.68605 4.73946 5.04360 5.14720 5.18760 5.29479 5.38131 5.48935 5.52123 5.60827 5.69819 5.73971 5.86799 5.94867 6.06753 6.13003 6.16990 6.21655 6.30030 6.41476 6.45023 6.61164 6.71141 7.02876 7.07658 7.13213 7.24977 7.31945 7.63611 7.69589 7.93704 8.09488 8.21426 8.31520 8.68459 8.90365 8.99458 10.24886 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024157 B = 0.002341 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.817331 B =11958.847388 C =12518.362750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.068 4.068 3 C -0.117 4.117 4 C -0.119 4.119 5 C -0.122 4.122 6 C -0.116 4.116 7 C -0.088 4.088 8 C 0.183 3.817 9 H 0.130 0.870 10 C -0.157 4.157 11 N -0.696 5.696 12 C 0.546 3.454 13 S -0.631 6.631 14 N -0.593 5.593 15 C -0.037 4.037 16 C -0.038 4.038 17 C -0.160 4.160 18 C 0.120 3.880 19 C -0.455 4.455 20 H 0.078 0.922 21 C 0.070 3.930 22 N -0.785 5.785 23 Si 0.911 3.089 24 H -0.261 1.261 25 H -0.272 1.272 26 H -0.274 1.274 27 C -0.222 4.222 28 C -0.084 4.084 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.389 0.611 40 H 0.389 0.611 41 H 0.117 0.883 42 H 0.123 0.877 43 H 0.281 0.719 44 H 0.096 0.904 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.616 16.147 9.640 21.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.068 4.068 3 C -0.135 4.135 4 C -0.137 4.137 5 C -0.141 4.141 6 C -0.134 4.134 7 C -0.089 4.089 8 C 0.078 3.922 9 H 0.148 0.852 10 C -0.215 4.215 11 N -0.330 5.330 12 C 0.188 3.812 13 S -0.502 6.502 14 N -0.212 5.212 15 C -0.129 4.129 16 C -0.060 4.060 17 C -0.181 4.181 18 C 0.117 3.883 19 C -0.485 4.485 20 H 0.096 0.904 21 C -0.148 4.148 22 N -0.409 5.409 23 Si 0.736 3.264 24 H -0.185 1.185 25 H -0.197 1.197 26 H -0.200 1.200 27 C -0.243 4.243 28 C -0.105 4.105 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.142 0.858 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.133 0.867 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.226 0.774 40 H 0.225 0.775 41 H 0.135 0.865 42 H 0.141 0.859 43 H 0.092 0.908 44 H 0.114 0.886 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.099 16.137 9.717 20.919 hybrid contribution 1.551 -0.316 -0.450 1.645 sum 10.650 15.821 9.267 21.204 Atomic orbital electron populations 1.20953 0.90663 1.03358 1.03278 1.19737 0.96424 0.92081 0.98587 1.21050 0.94248 0.97444 1.00747 1.21139 0.94351 0.98022 1.00154 1.21070 0.99815 0.92398 1.00774 1.20843 0.93545 0.97988 1.01042 1.19853 0.93699 0.94333 1.01027 1.20207 0.95616 0.81964 0.94395 0.85229 1.22144 1.01952 1.03411 0.94032 1.44997 1.09171 1.23601 1.55186 1.22473 0.96185 0.80703 0.81850 1.93348 0.89456 1.88102 1.79279 1.41955 1.08066 1.23896 1.47238 1.16947 1.03981 0.97489 0.94518 1.20693 0.92691 0.92480 1.00108 1.20959 1.02139 1.00305 0.94685 1.17755 0.89575 0.90091 0.90919 1.19618 0.93357 1.14539 1.20945 0.90397 1.25957 0.97815 0.96758 0.94255 1.69859 1.07973 1.32370 1.30724 0.86216 0.79423 0.81330 0.79465 1.18514 1.19741 1.19953 1.20536 1.02717 1.01521 0.99496 1.20026 0.99288 0.98885 0.92264 0.90425 0.91334 0.90480 0.85822 0.86063 0.86078 0.86667 0.92913 0.91173 0.90260 0.77396 0.77536 0.86544 0.85944 0.90778 0.88621 0.89609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 9.20 36.00 0.33 -0.80 16 2 C -0.07 -0.67 5.88 -104.62 -0.62 -1.29 16 3 C -0.12 -1.01 9.70 -39.58 -0.38 -1.39 16 4 C -0.12 -0.96 10.05 -39.58 -0.40 -1.35 16 5 C -0.12 -1.01 10.05 -39.59 -0.40 -1.41 16 6 C -0.12 -1.06 9.21 -39.59 -0.36 -1.43 16 7 C -0.09 -0.92 5.03 -104.63 -0.53 -1.45 16 8 C 0.18 2.20 1.88 -69.08 -0.13 2.07 16 9 H 0.13 1.87 5.24 -51.93 -0.27 1.60 16 10 C -0.16 -1.75 9.34 37.16 0.35 -1.40 16 11 N -0.70 -8.74 4.98 -56.65 -0.28 -9.03 16 12 C 0.55 9.35 7.83 -86.93 -0.68 8.67 16 13 S -0.63 -13.84 23.93 -107.50 -2.57 -16.41 16 14 N -0.59 -10.04 5.28 -11.28 -0.06 -10.10 16 15 C -0.04 -0.80 5.95 -83.59 -0.50 -1.29 16 16 C -0.04 -0.92 7.78 -39.79 -0.31 -1.23 16 17 C -0.16 -4.24 8.59 -39.26 -0.34 -4.58 16 18 C 0.12 3.17 5.54 -106.80 -0.59 2.58 16 19 C -0.46 -11.98 9.04 -37.86 -0.34 -12.32 16 20 H 0.08 1.95 7.86 -52.49 -0.41 1.54 16 21 C 0.07 1.78 5.28 -17.34 -0.09 1.69 16 22 N -0.78 -20.85 10.82 55.54 0.60 -20.25 16 23 Si 0.91 18.80 29.57 -169.99 -5.03 13.77 16 24 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 25 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 26 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 27 C -0.22 -5.34 9.74 -39.26 -0.38 -5.72 16 28 C -0.08 -1.82 9.90 -39.78 -0.39 -2.22 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 31 H 0.08 0.73 5.81 -51.93 -0.30 0.43 16 32 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 33 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 35 H 0.12 0.87 6.27 -52.49 -0.33 0.54 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.68 7.37 -51.93 -0.38 0.30 16 38 H 0.08 1.07 7.87 -51.93 -0.41 0.66 16 39 H 0.39 3.74 6.42 -40.82 -0.26 3.48 16 40 H 0.39 5.02 8.84 -40.82 -0.36 4.65 16 41 H 0.12 2.85 6.05 -42.87 -0.26 2.59 16 42 H 0.12 3.41 6.24 -52.49 -0.33 3.08 16 43 H 0.28 6.83 8.30 -40.82 -0.34 6.50 16 44 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 45 H 0.09 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 376.82 15.07 5.68 5.68 Total: -1.00 -31.41 376.82 -13.25 -44.67 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -5.83 Total: 14.54 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: -5.76 Total: -22.87 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.26 Total: -39.38 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Atomic # 16 Polarization: -13.84 SS G_CDS: -2.57 Total: -16.41 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.41 -13.25 -44.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225753039.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.503 kcal (2) G-P(sol) polarization free energy of solvation -31.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds