Wall clock time and date at job start Tue Mar 31 2020 05:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38249 * 120.00000 * 2 1 4 4 C 1.38219 * 119.99953 * 180.02562 * 3 2 1 5 5 C 1.38255 * 119.99877 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99937 * 179.97438 * 5 4 3 7 7 C 1.38218 * 120.00202 * 0.02562 * 5 4 3 8 8 C 1.50690 * 120.00193 * 179.97438 * 7 5 4 9 9 N 1.46498 * 109.47396 * 184.95565 * 8 7 5 10 10 C 1.46507 * 120.00176 * 274.40358 * 9 8 7 11 11 S 1.65596 * 120.00286 * 94.39620 * 9 8 7 12 12 O 1.42099 * 106.40140 * 336.46921 * 11 9 8 13 13 O 1.42102 * 106.40509 * 203.54121 * 11 9 8 14 14 N 1.65609 * 107.21473 * 90.00574 * 11 9 8 15 15 C 1.46501 * 119.99673 * 270.00196 * 14 11 9 16 16 C 1.46495 * 120.00097 * 90.00103 * 14 11 9 17 17 H 1.08996 * 109.47305 * 0.02562 * 16 14 11 18 18 C 1.52994 * 109.47248 * 239.99827 * 16 14 11 19 19 C 1.50703 * 109.46844 * 119.99793 * 16 14 11 20 20 H 1.07995 * 120.00488 * 359.97438 * 19 16 14 21 21 C 1.37881 * 119.99751 * 179.97438 * 19 16 14 22 22 N 1.31512 * 119.99929 * 180.02562 * 21 19 16 23 23 Si 1.86798 * 119.99970 * 0.02562 * 21 19 16 24 24 H 1.48490 * 109.47061 * 269.99611 * 23 21 19 25 25 H 1.48503 * 109.47215 * 29.99645 * 23 21 19 26 26 H 1.48501 * 109.47094 * 149.99558 * 23 21 19 27 27 C 1.38215 * 119.99567 * 180.27922 * 2 1 3 28 28 H 1.09000 * 109.47338 * 89.99688 * 1 2 3 29 29 H 1.08998 * 109.47097 * 210.00181 * 1 2 3 30 30 H 1.09004 * 109.46649 * 329.99521 * 1 2 3 31 31 H 1.07995 * 120.00356 * 0.02562 * 3 2 1 32 32 H 1.07996 * 120.00321 * 179.97438 * 4 3 2 33 33 H 1.08998 * 109.47522 * 264.50368 * 6 5 4 34 34 H 1.09002 * 109.47564 * 24.50953 * 6 5 4 35 35 H 1.09008 * 109.47251 * 144.50965 * 6 5 4 36 36 H 1.09004 * 109.47329 * 64.95468 * 8 7 5 37 37 H 1.08999 * 109.47482 * 304.95931 * 8 7 5 38 38 H 1.09002 * 109.46739 * 274.61323 * 10 9 8 39 39 H 1.09006 * 109.46929 * 34.60364 * 10 9 8 40 40 H 1.08995 * 109.47368 * 154.60812 * 10 9 8 41 41 H 1.09007 * 109.46908 * 270.00230 * 15 14 11 42 42 H 1.08999 * 109.47664 * 29.99639 * 15 14 11 43 43 H 1.09001 * 109.46909 * 150.00238 * 15 14 11 44 44 H 1.09004 * 109.47416 * 300.00295 * 18 16 14 45 45 H 1.09000 * 109.47286 * 59.99677 * 18 16 14 46 46 H 1.09003 * 109.47538 * 180.02562 * 18 16 14 47 47 H 0.96998 * 119.99956 * 180.02562 * 22 21 19 48 48 H 1.07996 * 120.00320 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0005 6 6 5.7787 -0.0001 -0.0017 7 6 3.5807 -1.1971 -0.0005 8 6 4.3341 -2.5021 -0.0011 9 7 3.3865 -3.6130 -0.1203 10 6 2.7446 -4.1601 1.0776 11 16 3.0408 -4.2504 -1.6091 12 8 3.3311 -3.2334 -2.5582 13 8 1.7653 -4.8665 -1.4955 14 7 4.1265 -5.4703 -1.8841 15 6 5.4015 -5.1809 -2.5452 16 6 3.8120 -6.8388 -1.4664 17 1 2.8286 -6.8584 -0.9970 18 6 4.8647 -7.3215 -0.4666 19 6 3.8112 -7.7440 -2.6713 20 1 4.0232 -7.3403 -3.6502 21 6 3.5396 -9.0878 -2.5237 22 7 3.5393 -9.8779 -3.5750 23 14 3.1722 -9.7859 -0.8305 24 1 4.4382 -10.2255 -0.1910 25 1 2.5312 -8.7408 0.0074 26 1 2.2550 -10.9464 -0.9620 27 6 2.1980 -1.1970 -0.0058 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6584 2.1326 0.0004 32 1 4.1205 2.1325 -0.0010 33 1 6.1413 -0.0990 -1.0248 34 1 6.1425 0.9351 0.4239 35 1 6.1425 -0.8366 0.5951 36 1 4.8929 -2.5995 0.9297 37 1 5.0254 -2.5222 -0.8436 38 1 3.3956 -4.9089 1.5288 39 1 2.5649 -3.3570 1.7924 40 1 1.7960 -4.6213 0.8031 41 1 5.2843 -5.2886 -3.6236 42 1 5.7078 -4.1609 -2.3132 43 1 6.1609 -5.8779 -2.1908 44 1 5.8481 -7.3019 -0.9364 45 1 4.8654 -6.6667 0.4048 46 1 4.6310 -8.3398 -0.1561 47 1 3.3480 -10.8231 -3.4713 48 1 1.6581 -2.1323 -0.0100 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225754513.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:12 Heat of formation + Delta-G solvation = -41.622685 kcal Electronic energy + Delta-G solvation = -29306.221814 eV Core-core repulsion = 25488.374437 eV Total energy + Delta-G solvation = -3817.847377 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.87070 -36.86569 -36.44771 -36.32185 -35.32305 -34.05122 -32.51550 -31.20818 -30.06545 -29.35108 -27.65360 -25.83976 -25.12694 -25.00408 -24.57156 -22.00423 -20.84012 -20.35245 -18.46471 -17.43287 -17.25657 -16.47414 -16.25186 -15.98564 -15.48790 -15.12266 -14.63523 -14.49813 -14.22464 -14.05492 -13.57946 -13.46504 -13.39584 -12.99246 -12.89266 -12.84393 -12.77421 -12.69537 -12.33923 -12.32053 -12.15502 -12.02745 -11.92486 -11.61424 -11.52168 -11.38727 -11.31792 -11.20210 -11.12359 -11.08048 -10.98217 -10.49072 -10.17698 -9.62593 -9.42359 -9.10474 -8.78158 -8.64676 -8.43453 -8.13202 -6.13833 -4.14501 1.00097 1.27311 1.35750 3.20173 3.27807 3.32316 3.34697 3.64462 3.92159 4.32997 4.64176 4.67645 4.74028 4.80794 4.87161 4.95162 5.05989 5.15423 5.27511 5.35321 5.37462 5.42369 5.46208 5.50055 5.53894 5.55187 5.63665 5.70723 5.81619 5.84762 5.94627 5.98615 6.05616 6.12662 6.15006 6.22702 6.27926 6.37955 6.45042 6.45975 6.53911 6.56464 6.71002 6.79619 6.98209 7.26208 7.37515 7.61450 8.45783 8.90523 9.45767 10.99238 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020215 B = 0.003563 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.769525 B = 7857.009747 C = 8240.698638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.090 4.090 3 C -0.123 4.123 4 C -0.116 4.116 5 C -0.088 4.088 6 C -0.117 4.117 7 C -0.091 4.091 8 C 0.168 3.832 9 N -1.014 6.014 10 C 0.082 3.918 11 S 2.775 3.225 12 O -0.980 6.980 13 O -0.971 6.971 14 N -0.984 5.984 15 C 0.109 3.891 16 C 0.239 3.761 17 H 0.056 0.944 18 C -0.162 4.162 19 C -0.523 4.523 20 H 0.082 0.918 21 C 0.074 3.926 22 N -0.894 5.894 23 Si 0.882 3.118 24 H -0.277 1.277 25 H -0.264 1.264 26 H -0.293 1.293 27 C -0.107 4.107 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.056 0.944 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.054 0.946 42 H 0.049 0.951 43 H 0.073 0.927 44 H 0.060 0.940 45 H 0.032 0.968 46 H 0.049 0.951 47 H 0.266 0.734 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.492 19.647 12.016 23.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.090 4.090 3 C -0.141 4.141 4 C -0.134 4.134 5 C -0.089 4.089 6 C -0.174 4.174 7 C -0.093 4.093 8 C 0.043 3.957 9 N -0.851 5.851 10 C -0.063 4.063 11 S 2.784 3.216 12 O -0.964 6.964 13 O -0.955 6.955 14 N -0.826 5.826 15 C -0.037 4.037 16 C 0.135 3.865 17 H 0.074 0.926 18 C -0.221 4.221 19 C -0.562 4.562 20 H 0.100 0.900 21 C -0.129 4.129 22 N -0.531 5.531 23 Si 0.712 3.288 24 H -0.204 1.204 25 H -0.189 1.189 26 H -0.220 1.220 27 C -0.125 4.125 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.103 0.897 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.092 0.908 44 H 0.079 0.921 45 H 0.051 0.949 46 H 0.068 0.932 47 H 0.076 0.924 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.765 19.732 11.377 22.845 hybrid contribution 0.143 -0.701 1.056 1.276 sum 1.907 19.031 12.434 22.812 Atomic orbital electron populations 1.20811 0.91289 1.02625 1.02547 1.19908 0.96088 0.93111 0.99883 1.20961 0.94188 0.97285 1.01684 1.20941 0.94107 0.97192 1.01117 1.19624 0.95942 0.92370 1.00923 1.20822 0.91222 1.02661 1.02655 1.20152 0.94225 0.94780 1.00101 1.20075 0.90191 0.82144 1.03340 1.58148 1.57037 1.44824 1.25125 1.21595 0.98355 0.98967 0.87399 1.02226 0.73868 0.72655 0.72807 1.93570 1.85595 1.58204 1.58995 1.93584 1.38846 1.76877 1.86189 1.57520 1.31983 1.21201 1.71864 1.21201 0.85637 0.98916 0.97955 1.19078 0.94318 0.78263 0.94878 0.92646 1.22494 1.01768 0.99583 0.98270 1.21160 1.48871 0.92189 0.93988 0.90025 1.24911 0.94516 0.96823 0.96658 1.69872 1.48802 1.05233 1.29234 0.86950 0.77985 0.78896 0.84999 1.20371 1.18914 1.22049 1.20916 0.93666 0.97702 1.00224 0.91043 0.91467 0.91648 0.86316 0.86168 0.90802 0.91641 0.91398 0.89124 0.88981 0.92505 0.91183 0.89732 0.92698 0.93237 0.90842 0.92148 0.94864 0.93237 0.92426 0.86180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 10.01 36.01 0.36 -0.80 16 2 C -0.09 -1.10 5.88 -104.62 -0.62 -1.71 16 3 C -0.12 -1.34 9.70 -39.58 -0.38 -1.72 16 4 C -0.12 -1.22 9.68 -39.58 -0.38 -1.60 16 5 C -0.09 -0.99 5.88 -104.63 -0.62 -1.60 16 6 C -0.12 -0.98 9.43 36.00 0.34 -0.64 16 7 C -0.09 -1.17 5.88 -104.63 -0.61 -1.78 16 8 C 0.17 2.03 4.45 -5.20 -0.02 2.01 16 9 N -1.01 -14.61 2.07 -123.05 -0.25 -14.87 16 10 C 0.08 1.02 9.60 59.85 0.57 1.59 16 11 S 2.78 53.53 6.01 -107.50 -0.65 52.89 16 12 O -0.98 -20.19 16.19 -57.17 -0.93 -21.11 16 13 O -0.97 -21.84 15.26 -57.17 -0.87 -22.71 16 14 N -0.98 -19.76 3.12 -115.86 -0.36 -20.12 16 15 C 0.11 1.88 9.53 59.85 0.57 2.45 16 16 C 0.24 5.50 2.21 -69.09 -0.15 5.35 16 17 H 0.06 1.35 5.97 -51.93 -0.31 1.04 16 18 C -0.16 -3.23 8.65 37.15 0.32 -2.91 16 19 C -0.52 -14.42 8.95 -34.44 -0.31 -14.73 16 20 H 0.08 2.45 7.89 -52.49 -0.41 2.04 16 21 C 0.07 2.09 5.45 -17.82 -0.10 1.99 16 22 N -0.89 -26.89 13.96 55.43 0.77 -26.12 16 23 Si 0.88 21.22 24.37 -169.99 -4.14 17.08 16 24 H -0.28 -6.33 6.87 56.52 0.39 -5.94 16 25 H -0.26 -6.05 6.53 56.52 0.37 -5.68 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 27 C -0.11 -1.47 8.66 -39.58 -0.34 -1.81 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 30 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 31 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.44 8.05 -51.93 -0.42 0.02 16 35 H 0.07 0.49 7.00 -51.92 -0.36 0.13 16 36 H 0.09 0.84 7.72 -51.93 -0.40 0.44 16 37 H 0.09 1.10 7.15 -51.93 -0.37 0.73 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.70 7.91 -51.93 -0.41 0.29 16 40 H 0.08 1.15 6.92 -51.93 -0.36 0.79 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.05 0.69 7.43 -51.93 -0.39 0.31 16 43 H 0.07 1.19 6.43 -51.93 -0.33 0.86 16 44 H 0.06 1.14 6.66 -51.93 -0.35 0.80 16 45 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 47 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 48 H 0.12 1.72 6.17 -52.49 -0.32 1.39 16 LS Contribution 385.33 15.07 5.81 5.81 Total: -1.00 -34.11 385.33 -9.58 -43.69 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -7.59 Total: 1.37 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -1.37 Total: -15.91 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: 0.16 Total: -61.10 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -1.80 Total: -43.82 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.14 Total: 17.08 kcal Atomic # 16 Polarization: 53.53 SS G_CDS: -0.65 Total: 52.89 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.11 -9.58 -43.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225754513.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.070 kcal (2) G-P(sol) polarization free energy of solvation -34.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds