Wall clock time and date at job start Tue Mar 31 2020 05:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00242 * 2 1 4 4 C 1.38214 * 120.00223 * 180.02562 * 3 2 1 5 5 C 1.38255 * 119.99678 * 359.97438 * 4 3 2 6 6 C 1.50706 * 120.00046 * 179.97438 * 5 4 3 7 7 C 1.38209 * 120.00278 * 359.97438 * 5 4 3 8 8 C 1.50701 * 120.00262 * 179.97438 * 7 5 4 9 9 N 1.46507 * 109.47258 * 184.95782 * 8 7 5 10 10 C 1.46497 * 119.99783 * 274.40260 * 9 8 7 11 11 S 1.65593 * 119.99725 * 94.40021 * 9 8 7 12 12 O 1.42096 * 106.40857 * 336.45999 * 11 9 8 13 13 O 1.42108 * 106.40273 * 203.53868 * 11 9 8 14 14 N 1.65603 * 107.21622 * 90.00320 * 11 9 8 15 15 C 1.46502 * 119.99842 * 269.99529 * 14 11 9 16 16 C 1.46499 * 120.00125 * 89.99845 * 14 11 9 17 17 H 1.09002 * 109.47364 * 359.97438 * 16 14 11 18 18 C 1.53005 * 109.47547 * 119.99858 * 16 14 11 19 19 C 1.50699 * 109.47330 * 239.99888 * 16 14 11 20 20 H 1.08010 * 119.99726 * 0.02562 * 19 16 14 21 21 C 1.37874 * 120.00304 * 179.97438 * 19 16 14 22 22 N 1.31505 * 120.00273 * 0.02562 * 21 19 16 23 23 Si 1.86799 * 119.99938 * 179.97438 * 21 19 16 24 24 H 1.48505 * 109.47283 * 59.99975 * 23 21 19 25 25 H 1.48498 * 109.47165 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47339 * 299.99955 * 23 21 19 27 27 C 1.38209 * 119.99565 * 180.27019 * 2 1 3 28 28 H 1.08999 * 109.47318 * 89.99692 * 1 2 3 29 29 H 1.08998 * 109.47592 * 210.00245 * 1 2 3 30 30 H 1.09005 * 109.46762 * 330.00637 * 1 2 3 31 31 H 1.08004 * 119.99966 * 359.97438 * 3 2 1 32 32 H 1.07995 * 120.00308 * 179.97438 * 4 3 2 33 33 H 1.08993 * 109.46962 * 264.49843 * 6 5 4 34 34 H 1.08997 * 109.46521 * 24.49944 * 6 5 4 35 35 H 1.08999 * 109.47227 * 144.49388 * 6 5 4 36 36 H 1.08999 * 109.46961 * 64.95554 * 8 7 5 37 37 H 1.09000 * 109.47097 * 304.95830 * 8 7 5 38 38 H 1.09004 * 109.47063 * 274.59872 * 10 9 8 39 39 H 1.08997 * 109.47502 * 34.59620 * 10 9 8 40 40 H 1.08999 * 109.47041 * 154.59958 * 10 9 8 41 41 H 1.09003 * 109.46739 * 269.99907 * 15 14 11 42 42 H 1.08993 * 109.46989 * 30.00212 * 15 14 11 43 43 H 1.08999 * 109.47017 * 150.00388 * 15 14 11 44 44 H 1.08990 * 109.47218 * 180.02562 * 18 16 14 45 45 H 1.08998 * 109.46846 * 300.00254 * 18 16 14 46 46 H 1.09002 * 109.46747 * 59.99673 * 18 16 14 47 47 H 0.96998 * 120.00609 * 180.02562 * 22 21 19 48 48 H 1.08000 * 120.00525 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0005 6 6 5.7787 -0.0002 -0.0017 7 6 3.5806 -1.1970 0.0005 8 6 4.3340 -2.5022 0.0000 9 7 3.3863 -3.6131 -0.1181 10 6 2.7453 -4.1596 1.0806 11 16 3.0396 -4.2510 -1.6064 12 8 3.3291 -3.2345 -2.5561 13 8 1.7642 -4.8671 -1.4917 14 7 4.1251 -5.4710 -1.8816 15 6 5.3996 -5.1820 -2.5438 16 6 3.8109 -6.8394 -1.4631 17 1 2.8280 -6.8587 -0.9922 18 6 3.8091 -7.7591 -2.6859 19 6 4.8484 -7.3145 -0.4788 20 1 5.6605 -6.6621 -0.1932 21 6 4.7605 -8.5814 0.0579 22 7 3.7715 -9.3755 -0.2895 23 14 6.0470 -9.1704 1.2774 24 1 6.0498 -8.2775 2.4640 25 1 5.7278 -10.5569 1.7027 26 1 7.3859 -9.1449 0.6356 27 6 2.1980 -1.1970 -0.0056 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5138 31 1 1.6583 2.1327 -0.0004 32 1 4.1205 2.1325 -0.0010 33 1 6.1412 -0.0992 -1.0248 34 1 6.1423 0.9351 0.4238 35 1 6.1425 -0.8365 0.5952 36 1 4.8935 -2.5991 0.9304 37 1 5.0247 -2.5226 -0.8431 38 1 3.3966 -4.9084 1.5315 39 1 2.5663 -3.3563 1.7952 40 1 1.7964 -4.6207 0.8069 41 1 5.2816 -5.2902 -3.6220 42 1 5.7060 -4.1619 -2.3123 43 1 6.1592 -5.8788 -2.1896 44 1 3.5749 -8.7770 -2.3746 45 1 3.0587 -7.4155 -3.3978 46 1 4.7921 -7.7397 -3.1565 47 1 3.7094 -10.2667 0.0884 48 1 1.6580 -2.1323 -0.0105 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225754540.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:16 Heat of formation + Delta-G solvation = -53.103917 kcal Electronic energy + Delta-G solvation = -29340.924009 eV Core-core repulsion = 25522.578768 eV Total energy + Delta-G solvation = -3818.345241 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.76946 -36.74266 -36.16564 -36.11828 -35.23554 -33.95448 -32.61986 -31.07356 -29.27145 -29.10278 -27.45508 -25.53084 -25.19798 -24.94668 -24.42565 -21.88561 -20.71543 -20.24472 -18.36352 -17.21233 -16.90774 -16.47565 -16.01462 -15.91079 -15.32381 -14.94506 -14.56007 -14.32108 -14.03505 -13.89208 -13.42425 -13.39779 -13.26573 -12.80138 -12.74443 -12.72903 -12.68986 -12.51223 -12.12845 -11.99081 -11.94772 -11.78245 -11.52143 -11.39230 -11.25892 -11.23036 -11.18094 -11.01633 -10.97287 -10.89303 -10.87410 -10.45829 -10.23357 -10.08770 -9.33696 -8.82690 -8.67828 -8.50469 -8.34739 -7.96722 -6.11495 -4.20346 1.19531 1.36100 1.44663 3.23238 3.29701 3.29845 3.42893 3.73563 4.07652 4.33031 4.75627 4.78170 4.85718 4.91547 5.02671 5.06419 5.14838 5.18823 5.41695 5.45999 5.52731 5.52910 5.57819 5.64046 5.66387 5.69614 5.76717 5.89176 5.92701 6.13112 6.13761 6.16481 6.23106 6.24750 6.34593 6.47641 6.57364 6.63077 6.66984 6.83273 6.86344 6.93708 7.07231 7.10493 7.48275 7.60229 7.76066 8.02994 8.23926 8.82489 9.46009 10.93465 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016161 B = 0.003728 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.121903 B = 7508.040017 C = 7851.261180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.091 4.091 3 C -0.125 4.125 4 C -0.116 4.116 5 C -0.088 4.088 6 C -0.117 4.117 7 C -0.088 4.088 8 C 0.169 3.831 9 N -1.008 6.008 10 C 0.086 3.914 11 S 2.777 3.223 12 O -0.990 6.990 13 O -0.979 6.979 14 N -0.991 5.991 15 C 0.107 3.893 16 C 0.268 3.732 17 H 0.058 0.942 18 C -0.145 4.145 19 C -0.526 4.526 20 H 0.062 0.938 21 C 0.065 3.935 22 N -0.886 5.886 23 Si 0.896 3.104 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 C -0.106 4.106 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.043 0.957 42 H 0.047 0.953 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.011 0.989 46 H 0.032 0.968 47 H 0.264 0.736 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.627 17.117 2.417 17.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.091 4.091 3 C -0.143 4.143 4 C -0.134 4.134 5 C -0.089 4.089 6 C -0.174 4.174 7 C -0.090 4.090 8 C 0.043 3.957 9 N -0.845 5.845 10 C -0.060 4.060 11 S 2.787 3.213 12 O -0.974 6.974 13 O -0.963 6.963 14 N -0.833 5.833 15 C -0.040 4.040 16 C 0.165 3.835 17 H 0.076 0.924 18 C -0.205 4.205 19 C -0.566 4.566 20 H 0.080 0.920 21 C -0.137 4.137 22 N -0.524 5.524 23 Si 0.724 3.276 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 C -0.125 4.125 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.099 0.901 44 H 0.111 0.889 45 H 0.031 0.969 46 H 0.051 0.949 47 H 0.074 0.926 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.157 17.186 1.891 17.290 hybrid contribution 1.027 -0.533 0.939 1.490 sum 0.870 16.653 2.830 16.914 Atomic orbital electron populations 1.20802 0.91354 1.02623 1.02430 1.19898 0.96038 0.93124 1.00029 1.20941 0.94176 0.97228 1.01918 1.20927 0.94097 0.97151 1.01252 1.19629 0.95942 0.92375 1.00955 1.20820 0.91254 1.02680 1.02605 1.20214 0.94247 0.94890 0.99681 1.20048 0.90230 0.82071 1.03348 1.57928 1.56880 1.44651 1.25063 1.21579 0.98539 0.98828 0.87034 1.02071 0.73902 0.72577 0.72788 1.93552 1.85872 1.58506 1.59456 1.93565 1.39282 1.77056 1.86424 1.57794 1.31144 1.22527 1.71832 1.21187 0.86777 0.99693 0.96295 1.18725 0.97305 0.74761 0.92741 0.92442 1.22057 0.97953 1.03641 0.96812 1.21330 1.11064 0.99386 1.24803 0.91974 1.24914 0.95700 0.96525 0.96608 1.69864 1.30645 1.08623 1.43309 0.86600 0.81760 0.77834 0.81394 1.20278 1.21252 1.20282 1.20930 0.93709 0.97691 1.00129 0.91157 0.91441 0.91694 0.86398 0.86242 0.90887 0.91702 0.91291 0.89074 0.89197 0.91581 0.91745 0.89964 0.93875 0.93410 0.90149 0.88881 0.96942 0.94860 0.92556 0.86133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 10.01 36.01 0.36 -0.86 16 2 C -0.09 -1.19 5.88 -104.63 -0.62 -1.80 16 3 C -0.12 -1.45 9.70 -39.58 -0.38 -1.83 16 4 C -0.12 -1.32 9.68 -39.58 -0.38 -1.71 16 5 C -0.09 -1.09 5.88 -104.62 -0.62 -1.71 16 6 C -0.12 -1.11 9.43 36.01 0.34 -0.77 16 7 C -0.09 -1.26 5.88 -104.62 -0.61 -1.87 16 8 C 0.17 2.38 4.45 -5.19 -0.02 2.35 16 9 N -1.01 -16.67 2.06 -123.05 -0.25 -16.92 16 10 C 0.09 1.31 9.61 59.85 0.57 1.88 16 11 S 2.78 55.99 6.01 -107.50 -0.65 55.34 16 12 O -0.99 -20.74 16.19 -57.17 -0.93 -21.67 16 13 O -0.98 -22.51 15.26 -57.17 -0.87 -23.39 16 14 N -0.99 -20.71 3.12 -115.85 -0.36 -21.07 16 15 C 0.11 1.91 9.28 59.85 0.56 2.47 16 16 C 0.27 6.49 2.62 -69.08 -0.18 6.31 16 17 H 0.06 1.54 6.91 -51.93 -0.36 1.18 16 18 C -0.14 -3.46 8.97 37.16 0.33 -3.13 16 19 C -0.53 -13.23 7.99 -34.44 -0.28 -13.50 16 20 H 0.06 1.51 7.33 -52.48 -0.38 1.13 16 21 C 0.07 1.69 5.30 -17.82 -0.09 1.59 16 22 N -0.89 -23.98 11.32 55.43 0.63 -23.35 16 23 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 27 C -0.11 -1.58 8.66 -39.58 -0.34 -1.92 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 30 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 31 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 32 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.50 8.05 -51.93 -0.42 0.09 16 35 H 0.07 0.61 7.00 -51.93 -0.36 0.24 16 36 H 0.09 1.08 7.72 -51.93 -0.40 0.68 16 37 H 0.09 1.24 7.15 -51.93 -0.37 0.86 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.06 0.81 7.91 -51.93 -0.41 0.40 16 40 H 0.08 1.34 6.92 -51.93 -0.36 0.98 16 41 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.73 7.43 -51.93 -0.39 0.35 16 43 H 0.08 1.45 7.02 -51.93 -0.36 1.08 16 44 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 45 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 46 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 47 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 48 H 0.12 1.87 6.18 -52.49 -0.32 1.55 16 LS Contribution 392.85 15.07 5.92 5.92 Total: -1.00 -30.94 392.85 -10.69 -41.63 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -7.79 Total: 3.04 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -1.37 Total: -14.50 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: 0.01 Total: -61.35 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -1.80 Total: -45.06 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Atomic # 16 Polarization: 55.99 SS G_CDS: -0.65 Total: 55.34 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.94 -10.69 -41.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225754540.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.471 kcal (2) G-P(sol) polarization free energy of solvation -30.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds