Wall clock time and date at job start Tue Mar 31 2020 06:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 119.99971 * 2 1 4 4 S 1.65600 * 119.99758 * 179.97438 * 2 1 3 5 5 O 1.42101 * 106.40554 * 336.46205 * 4 2 1 6 6 O 1.42097 * 106.40012 * 203.53941 * 4 2 1 7 7 N 1.65603 * 107.21606 * 90.00219 * 4 2 1 8 8 C 1.46498 * 120.00057 * 269.99735 * 7 4 2 9 9 C 1.46503 * 119.99961 * 90.00171 * 7 4 2 10 10 C 1.50693 * 109.47490 * 94.99696 * 9 7 4 11 11 O 1.21284 * 119.99937 * 359.97438 * 10 9 7 12 12 N 1.34781 * 120.00055 * 179.97438 * 10 9 7 13 13 C 1.39234 * 119.99787 * 184.28933 * 12 10 9 14 14 C 1.39480 * 119.83810 * 324.71162 * 13 12 10 15 15 C 1.36373 * 120.17151 * 180.29688 * 14 13 12 16 16 C 1.40869 * 119.82638 * 359.48095 * 15 14 13 17 17 C 1.41149 * 120.16615 * 180.24677 * 16 15 14 18 18 H 1.08002 * 120.00564 * 215.01718 * 17 16 15 19 19 C 1.39907 * 119.99949 * 35.01923 * 17 16 15 20 20 N 1.30873 * 119.99679 * 355.54737 * 19 17 16 21 21 Si 1.86795 * 120.00282 * 175.54331 * 19 17 16 22 22 H 1.48497 * 109.47333 * 59.99949 * 21 19 17 23 23 H 1.48503 * 109.47069 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47361 * 299.99743 * 21 19 17 25 25 C 1.40878 * 119.67448 * 0.51928 * 16 15 14 26 26 C 1.36371 * 119.82161 * 359.73123 * 25 16 15 27 27 H 1.09001 * 109.46745 * 240.00152 * 1 2 3 28 28 H 1.08990 * 109.47088 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.46734 * 120.00183 * 1 2 3 30 30 H 1.09000 * 109.46842 * 270.00224 * 3 2 1 31 31 H 1.09003 * 109.46695 * 29.99992 * 3 2 1 32 32 H 1.08993 * 109.46693 * 149.99756 * 3 2 1 33 33 H 1.09008 * 109.46902 * 269.99975 * 8 7 4 34 34 H 1.08998 * 109.47060 * 30.00022 * 8 7 4 35 35 H 1.08994 * 109.47214 * 150.00049 * 8 7 4 36 36 H 1.09005 * 109.46995 * 334.99555 * 9 7 4 37 37 H 1.09001 * 109.46720 * 215.00421 * 9 7 4 38 38 H 0.96994 * 119.99721 * 4.29555 * 12 10 9 39 39 H 1.07997 * 119.91386 * 0.02562 * 14 13 12 40 40 H 1.08003 * 120.08733 * 179.70254 * 15 14 13 41 41 H 0.97006 * 120.00240 * 180.02562 * 20 19 17 42 42 H 1.07991 * 120.08734 * 179.71251 * 25 16 15 43 43 H 1.08005 * 119.91371 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 16 2.2930 -1.4342 0.0006 5 8 1.4113 -2.4063 0.5455 6 8 3.5759 -1.1566 0.5449 7 7 2.5381 -1.8593 -1.5810 8 6 1.5478 -2.6818 -2.2803 9 6 3.7453 -1.4131 -2.2808 10 6 4.7975 -2.4892 -2.2037 11 8 4.5623 -3.5266 -1.6211 12 7 5.9998 -2.2988 -2.7822 13 6 6.9398 -3.3259 -2.7886 14 6 7.0319 -4.1891 -1.6969 15 6 7.9541 -5.1937 -1.6933 16 6 8.8076 -5.3652 -2.8008 17 6 9.7612 -6.4059 -2.8070 18 1 10.7215 -6.2557 -3.2777 19 6 9.4623 -7.6321 -2.2033 20 7 8.3344 -7.7859 -1.5576 21 14 10.6730 -9.0499 -2.3189 22 1 11.9630 -8.6509 -1.7011 23 1 10.1242 -10.2292 -1.6024 24 1 10.8940 -9.3970 -3.7458 25 6 8.7086 -4.4895 -3.8999 26 6 7.7849 -3.4863 -3.8866 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3633 1.0276 -0.0005 29 1 -0.3633 -0.5139 -0.8900 30 1 2.3792 1.5834 -1.0277 31 1 1.6084 2.0284 0.5139 32 1 3.1499 1.1384 0.5139 33 1 1.7930 -3.7358 -2.1492 34 1 0.5574 -2.4854 -1.8699 35 1 1.5562 -2.4361 -3.3422 36 1 4.1212 -0.5032 -1.8128 37 1 3.5066 -1.2124 -3.3253 38 1 6.2103 -1.4461 -3.1940 39 1 6.3742 -4.0588 -0.8502 40 1 8.0275 -5.8583 -0.8452 41 1 8.1272 -8.6359 -1.1387 42 1 9.3627 -4.6120 -4.7504 43 1 7.7080 -2.8138 -4.7282 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225960255.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:08 Heat of formation + Delta-G solvation = -67.764396 kcal Electronic energy + Delta-G solvation = -27777.342726 eV Core-core repulsion = 23757.102754 eV Total energy + Delta-G solvation = -4020.239972 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.71991 -37.48115 -37.34351 -36.45275 -35.88273 -35.79465 -34.34653 -32.87916 -29.74970 -29.36260 -28.52412 -28.19943 -25.70865 -24.95868 -24.34201 -21.53665 -21.01301 -19.69204 -19.17372 -18.13237 -17.66968 -17.24851 -17.01351 -16.59250 -16.15055 -15.35156 -15.19626 -14.98771 -14.58303 -14.25244 -14.16711 -13.89176 -13.41464 -13.26039 -13.15620 -13.03971 -12.88949 -12.66360 -12.52311 -12.29211 -12.05259 -11.88201 -11.85736 -11.82431 -11.72011 -11.56146 -11.42413 -11.10269 -10.91910 -10.47015 -10.08139 -9.85889 -9.73346 -9.48383 -9.23614 -8.89096 -8.63251 -7.48252 -6.85328 -6.55192 -4.29477 0.34241 2.59062 2.63950 3.03455 3.12492 3.13731 3.15457 3.27685 3.36371 3.75241 4.02071 4.12176 4.37844 4.53169 4.76243 4.92488 4.94033 5.00225 5.06382 5.12967 5.21190 5.33245 5.39714 5.41311 5.52411 5.69665 5.74923 5.84532 5.97301 6.15278 6.36693 6.43094 6.83492 7.03980 7.08308 7.23970 7.33656 7.67479 7.71051 8.01958 8.13307 8.22412 8.37593 8.71100 8.78330 8.97181 9.05304 10.35725 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023762 B = 0.002523 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.058894 B =11095.414883 C =11603.076480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -1.019 6.019 3 C 0.082 3.918 4 S 2.787 3.213 5 O -0.966 6.966 6 O -0.963 6.963 7 N -0.990 5.990 8 C 0.097 3.903 9 C 0.110 3.890 10 C 0.479 3.521 11 O -0.515 6.515 12 N -0.652 5.652 13 C 0.005 3.995 14 C -0.093 4.093 15 C -0.144 4.144 16 C 0.100 3.900 17 C -0.464 4.464 18 H 0.075 0.925 19 C 0.069 3.931 20 N -0.807 5.807 21 Si 0.916 3.084 22 H -0.266 1.266 23 H -0.279 1.279 24 H -0.267 1.267 25 C -0.205 4.205 26 C -0.113 4.113 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.395 0.605 39 H 0.108 0.892 40 H 0.130 0.870 41 H 0.279 0.721 42 H 0.096 0.904 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.337 18.393 -1.652 24.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.860 5.860 3 C -0.063 4.063 4 S 2.795 3.205 5 O -0.950 6.950 6 O -0.947 6.947 7 N -0.828 5.828 8 C -0.049 4.049 9 C -0.020 4.020 10 C 0.263 3.737 11 O -0.390 6.390 12 N -0.296 5.296 13 C -0.087 4.087 14 C -0.113 4.113 15 C -0.164 4.164 16 C 0.098 3.902 17 C -0.494 4.494 18 H 0.093 0.907 19 C -0.147 4.147 20 N -0.434 5.434 21 Si 0.741 3.259 22 H -0.191 1.191 23 H -0.204 1.204 24 H -0.192 1.192 25 C -0.225 4.225 26 C -0.133 4.133 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.228 0.772 39 H 0.126 0.874 40 H 0.148 0.852 41 H 0.090 0.910 42 H 0.114 0.886 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.434 16.981 -0.335 22.950 hybrid contribution 0.383 -0.050 -0.810 0.897 sum -15.051 16.932 -1.145 22.683 Atomic orbital electron populations 1.21527 0.78356 1.03497 1.02026 1.57938 1.15483 1.22601 1.89989 1.21646 0.97560 0.85132 1.01985 1.02094 0.73171 0.72557 0.72719 1.93601 1.67110 1.58199 1.76071 1.93625 1.39958 1.84954 1.76125 1.57449 1.27686 1.64897 1.32818 1.21505 0.89649 0.96239 0.97466 1.21109 0.84485 0.96319 1.00134 1.21016 0.83044 0.89185 0.80411 1.90721 1.79401 1.27865 1.40992 1.42936 1.13572 1.15483 1.57605 1.17270 0.97478 0.96263 0.97723 1.20679 0.98202 0.96035 0.96348 1.21312 0.97878 0.97633 0.99585 1.17725 0.92113 0.90663 0.89704 1.19441 1.01468 0.96517 1.32023 0.90690 1.25901 0.95495 1.00331 0.92959 1.69787 1.21612 1.25895 1.26108 0.86253 0.80712 0.79718 0.79233 1.19077 1.20444 1.19174 1.20679 1.02598 1.00349 0.98911 1.20055 0.98652 0.99387 0.95221 0.91523 0.90250 0.92389 0.92722 0.90648 0.89838 0.91384 0.91296 0.91009 0.87726 0.87414 0.77214 0.87412 0.85225 0.91004 0.88564 0.89166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.60 10.30 59.85 0.62 1.22 16 2 N -1.02 -9.11 3.64 -129.20 -0.47 -9.58 16 3 C 0.08 0.54 10.63 59.85 0.64 1.17 16 4 S 2.79 38.29 6.02 -107.50 -0.65 37.64 16 5 O -0.97 -16.02 16.37 -57.17 -0.94 -16.96 16 6 O -0.96 -16.31 15.71 -57.17 -0.90 -17.21 16 7 N -0.99 -12.15 2.73 -123.05 -0.34 -12.48 16 8 C 0.10 1.02 10.32 59.85 0.62 1.64 16 9 C 0.11 1.24 5.85 -5.20 -0.03 1.21 16 10 C 0.48 8.45 7.73 -10.99 -0.08 8.37 16 11 O -0.51 -11.73 13.84 5.55 0.08 -11.65 16 12 N -0.65 -11.29 5.30 -9.74 -0.05 -11.34 16 13 C 0.00 0.11 6.31 -83.57 -0.53 -0.42 16 14 C -0.09 -2.40 8.61 -39.79 -0.34 -2.74 16 15 C -0.14 -3.99 8.61 -39.26 -0.34 -4.33 16 16 C 0.10 2.75 5.55 -106.80 -0.59 2.15 16 17 C -0.46 -12.59 9.02 -37.85 -0.34 -12.93 16 18 H 0.07 1.93 7.85 -52.49 -0.41 1.52 16 19 C 0.07 1.80 5.42 -17.34 -0.09 1.70 16 20 N -0.81 -22.11 10.61 55.55 0.59 -21.52 16 21 Si 0.92 19.52 29.56 -169.99 -5.03 14.50 16 22 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 23 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 24 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 25 C -0.21 -5.01 9.74 -39.26 -0.38 -5.39 16 26 C -0.11 -2.46 9.90 -39.79 -0.39 -2.86 16 27 H 0.07 0.48 8.01 -51.93 -0.42 0.07 16 28 H 0.08 0.31 7.79 -51.93 -0.40 -0.09 16 29 H 0.06 0.31 8.09 -51.93 -0.42 -0.11 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.34 7.92 -51.93 -0.41 -0.07 16 32 H 0.08 0.65 7.02 -51.93 -0.36 0.28 16 33 H 0.07 0.90 8.14 -51.92 -0.42 0.47 16 34 H 0.07 0.58 7.74 -51.93 -0.40 0.18 16 35 H 0.07 0.56 7.94 -51.93 -0.41 0.14 16 36 H 0.10 0.93 7.61 -51.93 -0.40 0.54 16 37 H 0.11 0.80 7.96 -51.93 -0.41 0.39 16 38 H 0.39 4.96 8.82 -40.82 -0.36 4.60 16 39 H 0.11 2.88 6.22 -52.49 -0.33 2.55 16 40 H 0.13 3.77 6.15 -52.48 -0.32 3.45 16 41 H 0.28 7.05 8.30 -40.82 -0.34 6.71 16 42 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 43 H 0.09 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 372.91 15.07 5.62 5.62 Total: -1.00 -37.36 372.91 -9.22 -46.59 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -5.89 Total: 7.62 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -1.26 Total: -11.21 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.27 Total: -54.92 kcal Atomic # 8 Polarization: -44.06 SS G_CDS: -1.76 Total: -45.82 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.03 Total: 14.50 kcal Atomic # 16 Polarization: 38.29 SS G_CDS: -0.65 Total: 37.64 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.36 -9.22 -46.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225960255.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.177 kcal (2) G-P(sol) polarization free energy of solvation -37.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds