Wall clock time and date at job start Tue Mar 31 2020 05:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00260 * 2 1 4 4 H 1.48500 * 109.47422 * 240.00163 * 3 2 1 5 5 H 1.48504 * 109.46902 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46900 * 120.00104 * 3 2 1 7 7 C 1.37879 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99975 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99907 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47114 * 179.97438 * 9 7 2 11 11 C 1.44514 * 120.93151 * 270.25373 * 10 9 7 12 12 C 1.53285 * 111.99573 * 180.28307 * 11 10 9 13 13 S 1.81987 * 104.33500 * 359.74530 * 12 11 10 14 14 C 1.35700 * 120.92253 * 90.02630 * 10 9 7 15 15 N 1.31383 * 125.31749 * 359.97438 * 14 10 9 16 16 C 1.36967 * 120.00220 * 179.72016 * 15 14 10 17 17 C 1.39617 * 120.14156 * 135.00199 * 16 15 14 18 18 C 1.37948 * 119.85835 * 179.97438 * 17 16 15 19 19 C 1.38436 * 120.14044 * 0.27898 * 18 17 16 20 20 Br 1.89096 * 119.85742 * 179.69694 * 19 18 17 21 21 C 1.38443 * 120.28186 * 359.44584 * 19 18 17 22 22 C 1.37942 * 120.14389 * 0.55083 * 21 19 18 23 23 H 0.96998 * 119.99643 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47179 * 60.00388 * 9 7 2 25 25 H 1.08992 * 109.47364 * 300.00176 * 9 7 2 26 26 H 1.08999 * 109.18816 * 59.47745 * 11 10 9 27 27 H 1.09005 * 108.68222 * 300.74499 * 11 10 9 28 28 H 1.08997 * 110.45529 * 241.03498 * 12 11 10 29 29 H 1.08996 * 110.46340 * 118.45950 * 12 11 10 30 30 H 1.08000 * 120.07208 * 359.95715 * 17 16 15 31 31 H 1.08002 * 119.92797 * 179.97438 * 18 17 16 32 32 H 1.08001 * 119.92927 * 180.25803 * 21 19 18 33 33 H 1.07995 * 120.07739 * 179.70767 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 2.6888 -4.1732 -1.2420 12 6 3.6668 -5.3296 -1.0052 13 16 3.7753 -5.4641 0.8064 14 6 2.6565 -4.1437 1.1618 15 7 2.3134 -3.7419 2.3647 16 6 2.8356 -4.3619 3.4687 17 6 3.3091 -3.6030 4.5407 18 6 3.8333 -4.2336 5.6500 19 6 3.8958 -5.6157 5.6993 20 35 4.6238 -6.4715 7.2203 21 6 3.4227 -6.3740 4.6420 22 6 2.8961 -5.7557 3.5271 23 1 -0.4849 0.8401 -0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 3.1926 -3.3942 -1.8142 27 1 1.8381 -4.5403 -1.8163 28 1 4.6433 -5.0954 -1.4290 29 1 3.2761 -6.2528 -1.4331 30 1 3.2653 -2.5246 4.5015 31 1 4.2002 -3.6477 6.4798 32 1 3.4705 -7.4520 4.6883 33 1 2.5318 -6.3482 2.7009 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252628015.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:03 Heat of formation + Delta-G solvation = 56.247080 kcal Electronic energy + Delta-G solvation = -18554.101529 eV Core-core repulsion = 15559.280299 eV Total energy + Delta-G solvation = -2994.821230 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 339.994 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.26700 -38.18476 -34.92803 -33.06567 -31.51122 -30.82316 -30.55676 -28.31020 -26.87653 -24.38028 -23.21642 -22.61828 -21.51830 -19.38819 -18.00848 -16.79508 -16.26227 -15.76226 -15.48718 -15.04960 -14.75800 -14.25962 -13.90155 -13.76790 -13.33535 -13.13024 -12.91923 -12.52199 -11.97564 -11.80968 -11.54305 -11.40946 -11.26152 -11.06216 -10.77981 -10.67015 -10.56541 -10.22515 -10.16387 -9.71457 -9.31892 -8.81461 -8.56430 -8.24359 -7.81046 -7.09418 -6.17038 -4.23911 1.06378 1.44265 1.64259 1.80309 2.12850 2.65509 3.24299 3.29634 3.31742 3.45262 4.00174 4.33013 4.45348 4.79498 5.01996 5.05550 5.16781 5.21033 5.43742 5.54538 5.63691 5.67380 5.77913 5.93840 6.18974 6.36293 6.45084 6.59680 6.77100 6.96468 7.19356 7.45682 7.72606 7.83380 8.02639 8.52200 8.78717 9.41424 10.89989 Molecular weight = 339.99amu Principal moments of inertia in cm(-1) A = 0.015623 B = 0.003281 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.790435 B = 8531.108525 C = 9858.318041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.066 3.934 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.532 4.532 8 H 0.058 0.942 9 C 0.256 3.744 10 N -0.568 5.568 11 C 0.110 3.890 12 C -0.109 4.109 13 S -0.188 6.188 14 C 0.463 3.537 15 N -0.545 5.545 16 C 0.175 3.825 17 C -0.122 4.122 18 C -0.070 4.070 19 C -0.126 4.126 20 Br -0.073 7.073 21 C -0.064 4.064 22 C -0.171 4.171 23 H 0.266 0.734 24 H 0.036 0.964 25 H 0.055 0.945 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.135 0.865 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.340 -14.220 5.763 17.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.137 4.137 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.570 4.570 8 H 0.076 0.924 9 C 0.135 3.865 10 N -0.281 5.281 11 C -0.015 4.015 12 C -0.258 4.258 13 S 0.041 5.959 14 C 0.083 3.917 15 N -0.276 5.276 16 C 0.068 3.932 17 C -0.144 4.144 18 C -0.091 4.091 19 C -0.206 4.206 20 Br 0.012 6.988 21 C -0.085 4.085 22 C -0.195 4.195 23 H 0.076 0.924 24 H 0.054 0.946 25 H 0.073 0.927 26 H 0.107 0.893 27 H 0.099 0.901 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.153 0.847 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.507 -14.491 7.116 18.248 hybrid contribution 0.009 1.432 -1.207 1.873 sum 8.516 -13.059 5.909 16.672 Atomic orbital electron populations 1.69907 1.06003 1.27429 1.49669 1.24892 0.94862 0.99204 0.94722 0.86537 0.79530 0.82529 0.78737 1.20228 1.21071 1.20044 1.21289 0.93317 0.90284 1.52160 0.92389 1.19502 0.86572 0.81201 0.99199 1.46944 1.45272 1.35439 1.00447 1.21336 0.97686 0.95211 0.87275 1.24269 1.03878 1.02267 0.95422 1.86970 1.59191 1.43629 1.06082 1.24352 0.89174 0.88300 0.89837 1.68265 1.32158 1.32920 0.94305 1.18749 0.90603 0.90664 0.93143 1.21031 1.00019 1.00492 0.92856 1.20877 0.98068 0.92216 0.97909 1.21519 1.09555 0.94857 0.94661 1.96599 1.84324 1.79956 1.37914 1.20781 0.96478 0.99373 0.91838 1.21767 1.04030 0.94545 0.99163 0.92443 0.94579 0.92716 0.89316 0.90061 0.87327 0.87226 0.84711 0.85301 0.85627 0.84796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.18 13.29 55.43 0.74 -24.45 16 2 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.53 -14.09 9.39 -34.44 -0.32 -14.42 16 8 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.26 6.16 5.36 -5.19 -0.03 6.13 16 10 N -0.57 -11.17 2.83 -177.40 -0.50 -11.67 16 11 C 0.11 1.59 6.80 -4.95 -0.03 1.56 16 12 C -0.11 -1.25 7.38 37.30 0.28 -0.97 16 13 S -0.19 -2.84 19.59 -107.50 -2.11 -4.95 16 14 C 0.46 9.07 7.63 -89.03 -0.68 8.39 16 15 N -0.55 -11.65 9.80 -10.92 -0.11 -11.76 16 16 C 0.17 3.25 5.96 -84.54 -0.50 2.75 16 17 C -0.12 -2.09 9.99 -39.17 -0.39 -2.48 16 18 C -0.07 -1.03 9.77 -39.61 -0.39 -1.42 16 19 C -0.13 -1.78 6.23 -39.43 -0.25 -2.03 16 20 Br -0.07 -0.88 33.69 -68.01 -2.29 -3.17 16 21 C -0.06 -0.91 9.77 -39.61 -0.39 -1.30 16 22 C -0.17 -2.76 8.06 -39.17 -0.32 -3.07 16 23 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 24 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 25 H 0.05 1.48 7.66 -51.93 -0.40 1.08 16 26 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.14 2.33 8.06 -52.49 -0.42 1.90 16 31 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 33 H 0.13 2.10 6.43 -52.49 -0.34 1.76 16 LS Contribution 316.91 15.07 4.78 4.78 Total: -1.00 -29.23 316.91 -11.29 -40.52 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -3.66 Total: -0.09 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -3.12 Total: -5.17 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: 0.13 Total: -47.88 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -2.84 SS G_CDS: -2.11 Total: -4.95 kcal Atomic # 35 Polarization: -0.88 SS G_CDS: -2.29 Total: -3.17 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.23 -11.29 -40.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252628015.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.770 kcal (2) G-P(sol) polarization free energy of solvation -29.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds