Wall clock time and date at job start Tue Mar 31 2020 06:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 114.00216 * 2 1 4 4 C 1.52998 * 109.47114 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.46846 * 65.00475 * 4 3 2 6 6 C 1.46499 * 119.99896 * 274.99522 * 5 4 3 7 7 C 1.50694 * 109.47144 * 275.00115 * 6 5 4 8 8 H 1.08007 * 120.00294 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00112 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99769 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00415 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46738 * 90.00437 * 11 9 7 13 13 H 1.48497 * 109.47356 * 210.00638 * 11 9 7 14 14 H 1.48501 * 109.47118 * 330.01107 * 11 9 7 15 15 S 1.65601 * 119.99820 * 95.00109 * 5 4 3 16 16 O 1.42104 * 106.40162 * 156.46120 * 15 5 4 17 17 O 1.42097 * 106.40701 * 23.53573 * 15 5 4 18 18 N 1.65608 * 107.21642 * 269.99450 * 15 5 4 19 19 C 1.46622 * 124.93558 * 90.00273 * 18 15 5 20 20 C 1.53829 * 105.19056 * 179.97438 * 19 18 15 21 21 C 1.51044 * 104.45996 * 359.97438 * 20 19 18 22 22 C 1.37805 * 131.91596 * 180.02562 * 21 20 19 23 23 N 1.32045 * 120.71057 * 179.97438 * 22 21 20 24 24 C 1.32003 * 121.67217 * 0.02562 * 23 22 21 25 25 C 1.37747 * 121.04807 * 0.02562 * 24 23 22 26 26 C 1.38736 * 124.93820 * 269.69932 * 18 15 5 27 27 H 1.08993 * 109.47192 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46758 * 299.99821 * 1 2 3 29 29 H 1.09002 * 109.47183 * 59.99287 * 1 2 3 30 30 H 1.08998 * 109.46676 * 60.00480 * 3 2 1 31 31 H 1.08998 * 109.47278 * 300.00673 * 3 2 1 32 32 H 1.08999 * 109.47360 * 305.00285 * 4 3 2 33 33 H 1.09004 * 109.46813 * 184.99604 * 4 3 2 34 34 H 1.09003 * 109.46599 * 35.00508 * 6 5 4 35 35 H 1.08999 * 109.46720 * 154.99982 * 6 5 4 36 36 H 0.97003 * 119.99935 * 179.97438 * 10 9 7 37 37 H 1.09000 * 110.29391 * 298.89135 * 19 18 15 38 38 H 1.08999 * 110.29762 * 60.93478 * 19 18 15 39 39 H 1.09003 * 110.43534 * 118.74400 * 20 19 18 40 40 H 1.09001 * 110.43456 * 241.25332 * 20 19 18 41 41 H 1.08001 * 119.64484 * 359.95982 * 22 21 20 42 42 H 1.08008 * 119.47083 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.42398 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2529 6 6 4.0004 -0.8950 -1.3784 7 6 5.2993 -1.4246 -0.8279 8 1 6.0330 -0.7424 -0.4244 9 6 5.5508 -2.7802 -0.8382 10 7 4.6572 -3.6110 -1.3291 11 14 7.1613 -3.4367 -0.1565 12 1 7.0035 -3.7289 1.2909 13 1 7.5322 -4.6820 -0.8753 14 1 8.2285 -2.4210 -0.3429 15 16 4.4454 1.5131 -2.5263 16 8 5.3005 0.7116 -3.3298 17 8 4.8427 2.7601 -1.9728 18 7 3.0954 1.8146 -3.4370 19 6 2.1908 2.9526 -3.2462 20 6 1.1062 2.7907 -4.3249 21 6 1.4957 1.5333 -5.0656 22 6 0.9185 0.8758 -6.1303 23 7 1.4566 -0.2295 -6.6123 24 6 2.5581 -0.7451 -6.0991 25 6 3.1930 -0.1465 -5.0332 26 6 2.6595 1.0305 -4.4952 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5140 -0.8899 30 1 1.6887 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8515 0.5681 0.8409 33 1 3.9786 2.1765 0.0889 34 1 3.1677 -1.3218 -0.8192 35 1 3.9117 -1.1708 -2.4292 36 1 4.8343 -4.5647 -1.3367 37 1 1.7439 2.9178 -2.2526 38 1 2.7283 3.8905 -3.3858 39 1 0.1255 2.6730 -3.8639 40 1 1.1102 3.6464 -5.0001 41 1 0.0161 1.2686 -6.5751 42 1 2.9675 -1.6511 -6.5211 43 1 4.0935 -0.5773 -4.6210 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253397348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:38 Heat of formation + Delta-G solvation = -65.371637 kcal Electronic energy + Delta-G solvation = -29721.374973 eV Core-core repulsion = 25701.238758 eV Total energy + Delta-G solvation = -4020.136215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.80262 -37.94904 -37.42433 -36.93349 -35.54100 -35.41786 -32.57109 -32.34818 -30.61402 -29.64394 -29.16305 -26.84959 -25.78595 -23.85836 -22.92704 -22.91292 -21.92244 -21.89258 -19.12546 -17.87753 -17.27308 -16.78527 -16.41634 -16.18545 -15.98675 -15.64131 -15.31269 -15.16595 -14.99917 -14.70338 -14.43975 -13.97163 -13.59359 -13.46414 -13.15949 -12.77221 -12.71000 -12.55813 -12.33423 -12.11864 -12.07701 -11.85961 -11.76569 -11.60247 -11.39214 -11.11571 -11.09854 -11.07859 -10.86379 -10.70964 -10.44989 -10.03789 -9.79319 -9.44856 -9.40504 -8.87277 -8.43711 -8.25565 -8.15132 -6.03671 -4.07695 0.76694 1.29430 1.50405 3.05623 3.32231 3.38682 3.43643 3.72593 3.98141 4.01509 4.25305 4.30401 4.45510 4.60436 4.71763 4.81049 4.89326 5.10406 5.15640 5.22349 5.29574 5.33715 5.44625 5.46565 5.49821 5.54485 5.61832 5.70672 5.71943 5.77137 5.82258 5.87713 6.13184 6.18920 6.35926 6.43193 6.57256 6.92121 7.30223 7.36214 7.39560 7.66620 7.92743 8.17120 8.22165 8.93646 9.56556 11.04652 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010529 B = 0.005355 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.656461 B = 5227.920098 C = 5897.798492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.039 3.961 4 C 0.119 3.881 5 N -0.974 5.974 6 C 0.257 3.743 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.065 3.935 10 N -0.891 5.891 11 Si 0.895 3.105 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.273 1.273 15 S 2.770 3.230 16 O -0.942 6.942 17 O -0.982 6.982 18 N -0.944 5.944 19 C 0.109 3.891 20 C -0.071 4.071 21 C -0.199 4.199 22 C 0.134 3.866 23 N -0.506 5.506 24 C 0.127 3.873 25 C -0.195 4.195 26 C 0.216 3.784 27 H 0.084 0.916 28 H 0.035 0.965 29 H 0.034 0.966 30 H 0.055 0.945 31 H 0.040 0.960 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.056 0.944 35 H 0.033 0.967 36 H 0.263 0.737 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.152 0.848 42 H 0.163 0.837 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.155 12.673 -2.871 17.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.039 4.039 4 C -0.008 4.008 5 N -0.816 5.816 6 C 0.136 3.864 7 C -0.569 4.569 8 H 0.076 0.924 9 C -0.138 4.138 10 N -0.530 5.530 11 Si 0.722 3.278 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.198 1.198 15 S 2.780 3.220 16 O -0.925 6.925 17 O -0.966 6.966 18 N -0.765 5.765 19 C -0.015 4.015 20 C -0.110 4.110 21 C -0.207 4.207 22 C -0.024 4.024 23 N -0.216 5.216 24 C -0.028 4.028 25 C -0.218 4.218 26 C 0.109 3.891 27 H 0.102 0.898 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.119 0.881 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.170 0.830 42 H 0.180 0.820 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -10.457 12.246 -3.656 16.513 hybrid contribution 0.681 0.053 1.322 1.488 sum -9.776 12.300 -2.333 15.883 Atomic orbital electron populations 1.22709 0.82237 1.02632 0.98994 1.88151 1.18499 1.26558 1.95063 1.23245 0.95609 0.85650 0.99419 1.21362 0.90918 0.99321 0.89172 1.57703 1.80962 1.19514 1.23457 1.19227 0.98451 0.70748 0.97980 1.21452 1.02531 0.92170 1.40790 0.92351 1.24890 0.96894 0.96718 0.95273 1.69931 1.34468 1.03144 1.45455 0.86554 0.83871 0.78499 0.78853 1.20660 1.21075 1.19805 1.02579 0.72907 0.73088 0.73380 1.93636 1.61160 1.69121 1.68608 1.93544 1.80132 1.44302 1.78613 1.57204 1.44717 1.32633 1.41901 1.22014 0.90731 0.88673 1.00080 1.20941 0.98740 0.95434 0.95900 1.21060 0.98113 1.00371 1.01122 1.21901 0.98289 0.90593 0.91595 1.67887 1.11735 1.11538 1.30424 1.22521 0.90284 0.98282 0.91719 1.22194 1.04537 0.95128 0.99960 1.18143 0.92867 0.91014 0.87115 0.89753 0.94669 0.94762 0.92731 0.94222 0.88095 0.88832 0.92608 0.94891 0.92733 0.90157 0.89426 0.89317 0.89214 0.83041 0.81997 0.82159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.36 -6.09 9.02 -35.23 -0.32 -6.41 16 3 C 0.04 0.55 6.28 37.16 0.23 0.79 16 4 C 0.12 1.99 6.13 -4.04 -0.02 1.96 16 5 N -0.97 -19.81 2.81 -115.66 -0.33 -20.14 16 6 C 0.26 6.37 4.94 -5.20 -0.03 6.35 16 7 C -0.53 -14.63 9.38 -34.44 -0.32 -14.95 16 8 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 9 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 10 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 11 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 15 S 2.77 54.59 6.22 -107.50 -0.67 53.92 16 16 O -0.94 -21.82 14.47 -57.17 -0.83 -22.65 16 17 O -0.98 -19.42 16.23 -57.17 -0.93 -20.35 16 18 N -0.94 -15.20 3.51 -58.05 -0.20 -15.40 16 19 C 0.11 1.27 7.17 -3.54 -0.03 1.24 16 20 C -0.07 -0.69 6.94 -27.28 -0.19 -0.88 16 21 C -0.20 -2.67 6.27 -104.32 -0.65 -3.32 16 22 C 0.13 1.74 11.17 -17.62 -0.20 1.54 16 23 N -0.51 -7.67 10.38 -13.40 -0.14 -7.81 16 24 C 0.13 2.01 11.15 -17.66 -0.20 1.81 16 25 C -0.19 -3.46 9.47 -39.11 -0.37 -3.83 16 26 C 0.22 3.57 6.64 -83.80 -0.56 3.01 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.04 0.50 5.63 -51.93 -0.29 0.21 16 32 H 0.10 1.77 8.11 -51.93 -0.42 1.34 16 33 H 0.09 1.38 6.91 -51.93 -0.36 1.02 16 34 H 0.06 1.46 6.60 -51.93 -0.34 1.12 16 35 H 0.03 0.87 7.12 -51.93 -0.37 0.50 16 36 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.08 0.81 5.64 -51.93 -0.29 0.51 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 42 H 0.16 2.17 8.06 -52.48 -0.42 1.75 16 43 H 0.16 3.23 5.80 -52.49 -0.30 2.93 16 LS Contribution 363.83 15.07 5.48 5.48 Total: -1.00 -34.27 363.83 -9.26 -43.53 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -5.73 Total: 1.26 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -1.31 Total: -3.05 kcal Atomic # 7 Polarization: -68.48 SS G_CDS: 0.07 Total: -68.41 kcal Atomic # 8 Polarization: -47.33 SS G_CDS: -2.07 Total: -49.41 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 54.59 SS G_CDS: -0.67 Total: 53.92 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.27 -9.26 -43.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253397348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.842 kcal (2) G-P(sol) polarization free energy of solvation -34.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds