Wall clock time and date at job start Tue Mar 31 2020 06:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35953 * 116.99616 * 2 1 4 4 C 1.38182 * 120.01144 * 0.30671 * 3 2 1 5 5 C 1.39768 * 119.85672 * 180.22884 * 4 3 2 6 6 C 1.47337 * 120.06744 * 179.76641 * 5 4 3 7 7 N 1.29862 * 120.00430 * 179.72289 * 6 5 4 8 8 N 1.40096 * 120.00474 * 179.97438 * 7 6 5 9 9 C 1.34781 * 120.00065 * 179.97438 * 8 7 6 10 10 O 1.21592 * 119.99938 * 0.02562 * 9 8 7 11 11 C 1.47777 * 119.99868 * 180.02562 * 9 8 7 12 12 C 1.40056 * 120.56038 * 179.72053 * 11 9 8 13 13 C 1.38345 * 118.28407 * 179.77600 * 12 11 9 14 14 C 1.38363 * 119.30820 * 0.50053 * 13 12 11 15 15 N 1.31930 * 121.08428 * 359.73883 * 14 13 12 16 16 C 1.31685 * 121.88279 * 0.02562 * 15 14 13 17 17 C 1.39833 * 119.86686 * 359.48952 * 5 4 3 18 18 C 1.37765 * 120.01621 * 0.23170 * 17 5 4 19 19 C 1.38968 * 120.14369 * 0.02562 * 18 17 5 20 20 O 1.35692 * 119.93353 * 180.02562 * 19 18 17 21 21 C 1.34789 * 117.00162 * 354.37316 * 20 19 18 22 22 H 1.07997 * 119.99459 * 5.07496 * 21 20 19 23 23 C 1.38625 * 119.99947 * 185.06894 * 21 20 19 24 24 N 1.31575 * 120.00183 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99598 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47070 * 60.00148 * 25 23 21 27 27 H 1.48500 * 109.46571 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.46950 * 299.99564 * 25 23 21 29 29 H 1.09005 * 109.46990 * 299.99607 * 1 2 3 30 30 H 1.09001 * 109.47238 * 59.99397 * 1 2 3 31 31 H 1.08999 * 109.46700 * 180.02562 * 1 2 3 32 32 H 1.08004 * 120.07000 * 359.96566 * 4 3 2 33 33 H 1.08002 * 120.00183 * 359.71890 * 6 5 4 34 34 H 0.96999 * 120.00111 * 0.02562 * 8 7 6 35 35 H 1.07993 * 120.85685 * 0.02562 * 12 11 9 36 36 H 1.08001 * 120.34586 * 180.22074 * 13 12 11 37 37 H 1.08002 * 119.45653 * 179.76484 * 14 13 12 38 38 H 1.08005 * 119.71884 * 179.97438 * 16 15 14 39 39 H 1.08002 * 119.99793 * 180.25268 * 17 5 4 40 40 H 1.08001 * 119.92908 * 180.02562 * 18 17 5 41 41 H 0.96998 * 119.99808 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2937 2.3704 0.0064 5 6 1.9315 3.6140 0.0015 6 6 1.1337 4.8528 0.0031 7 7 1.7276 6.0076 0.0041 8 7 0.9691 7.1855 0.0050 9 6 1.5855 8.3840 0.0065 10 8 2.8000 8.4431 0.0065 11 6 0.7853 9.6264 0.0081 12 6 1.4136 10.8781 0.0155 13 6 0.6190 12.0105 0.0120 14 6 -0.7577 11.8719 0.0118 15 7 -1.3222 10.6795 0.0099 16 6 -0.6092 9.5724 0.0085 17 6 3.3282 3.6803 0.0010 18 6 4.0732 2.5215 0.0005 19 6 3.4396 1.2846 -0.0001 20 8 4.1775 0.1459 -0.0001 21 6 5.5134 0.2823 -0.1173 22 1 5.9571 1.2669 -0.1232 23 6 6.3176 -0.8412 -0.2302 24 7 5.7769 -2.0407 -0.2234 25 14 8.1690 -0.6520 -0.3919 26 1 8.7009 0.0514 0.8029 27 1 8.7963 -1.9940 -0.4958 28 1 8.4813 0.1367 -1.6107 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 0.2151 2.3153 0.0109 33 1 0.0550 4.8004 0.0035 34 1 0.0002 7.1384 0.0054 35 1 2.4907 10.9572 0.0198 36 1 1.0685 12.9926 0.0139 37 1 -1.3804 12.7544 0.0129 38 1 -1.1079 8.6143 0.0073 39 1 3.8233 4.6402 0.0014 40 1 5.1519 2.5743 0.0005 41 1 6.3397 -2.8268 -0.3020 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000254513774.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:27 Heat of formation + Delta-G solvation = 19.034912 kcal Electronic energy + Delta-G solvation = -26946.714755 eV Core-core repulsion = 22794.794732 eV Total energy + Delta-G solvation = -4151.920023 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.92997 -39.69559 -39.13673 -37.64516 -37.02578 -35.63889 -33.06375 -32.90758 -32.39094 -31.28981 -29.67468 -28.85409 -26.70873 -25.62379 -24.96910 -24.03347 -22.97776 -21.74222 -21.02324 -20.40369 -18.61189 -18.18509 -17.53346 -17.37591 -17.13982 -16.36283 -15.85971 -15.41100 -15.34758 -15.21873 -15.20900 -14.64563 -14.20951 -14.15161 -14.05557 -13.91462 -13.59124 -13.56580 -13.42838 -12.69988 -12.62152 -12.41100 -11.77624 -11.58016 -11.50137 -11.15877 -10.99575 -10.82513 -10.56659 -10.56000 -10.50646 -10.41863 -10.13862 -9.85547 -9.74151 -9.52379 -9.18482 -8.76096 -7.96695 -6.93607 -6.57130 -4.09400 0.13746 0.69884 1.28767 2.15690 2.33999 2.49556 2.95225 3.10003 3.13489 3.14438 3.45095 3.74951 3.87919 3.93950 4.18970 4.28580 4.39128 4.48376 4.49228 4.77150 4.87950 4.94259 4.99756 5.05069 5.08136 5.41598 5.50874 5.51569 5.55082 5.57180 5.79864 5.80743 5.91452 6.02206 6.14206 6.26390 6.48421 6.81123 6.93743 6.97667 7.14798 7.23582 7.31521 7.49087 7.52330 7.83426 8.08086 8.33335 8.86338 9.53942 10.58583 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016402 B = 0.001994 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.717624 B =14041.672124 C =15728.307382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.302 6.302 3 C 0.051 3.949 4 C -0.133 4.133 5 C -0.146 4.146 6 C 0.154 3.846 7 N -0.264 5.264 8 N -0.581 5.581 9 C 0.578 3.422 10 O -0.500 6.500 11 C -0.180 4.180 12 C -0.014 4.014 13 C -0.177 4.177 14 C 0.120 3.880 15 N -0.487 5.487 16 C 0.133 3.867 17 C -0.039 4.039 18 C -0.226 4.226 19 C 0.151 3.849 20 O -0.149 6.149 21 C -0.390 4.390 22 H 0.098 0.902 23 C 0.041 3.959 24 N -0.847 5.847 25 Si 0.944 3.056 26 H -0.267 1.267 27 H -0.277 1.277 28 H -0.267 1.267 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.091 0.909 32 H 0.123 0.877 33 H 0.108 0.892 34 H 0.377 0.623 35 H 0.151 0.849 36 H 0.145 0.855 37 H 0.163 0.837 38 H 0.157 0.843 39 H 0.124 0.876 40 H 0.138 0.862 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.038 20.405 0.291 24.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.216 6.216 3 C 0.006 3.994 4 C -0.155 4.155 5 C -0.151 4.151 6 C -0.053 4.053 7 N -0.070 5.070 8 N -0.322 5.322 9 C 0.364 3.636 10 O -0.373 6.373 11 C -0.186 4.186 12 C -0.041 4.041 13 C -0.197 4.197 14 C -0.036 4.036 15 N -0.195 5.195 16 C -0.026 4.026 17 C -0.059 4.059 18 C -0.246 4.246 19 C 0.094 3.906 20 O -0.049 6.049 21 C -0.465 4.465 22 H 0.115 0.885 23 C -0.165 4.165 24 N -0.479 5.479 25 Si 0.768 3.232 26 H -0.192 1.192 27 H -0.201 1.201 28 H -0.192 1.192 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.141 0.859 33 H 0.125 0.875 34 H 0.215 0.785 35 H 0.169 0.831 36 H 0.163 0.837 37 H 0.180 0.820 38 H 0.174 0.826 39 H 0.142 0.858 40 H 0.156 0.844 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.161 20.288 0.294 24.185 hybrid contribution 0.072 0.045 -0.072 0.112 sum -13.088 20.334 0.222 24.183 Atomic orbital electron populations 1.22905 0.80324 1.03046 1.00271 1.86252 1.19446 1.26140 1.89780 1.17948 0.89315 0.84446 1.07675 1.20647 0.98389 0.90582 1.05840 1.17428 0.92486 0.88803 1.16339 1.24414 0.97033 0.90783 0.93091 1.75197 1.21812 0.91939 1.18045 1.46773 1.07708 1.04039 1.73682 1.17681 0.87517 0.81388 0.76984 1.90817 1.13261 1.86454 1.46742 1.20947 0.95173 0.94465 1.08037 1.21793 1.01847 0.90410 0.90014 1.22216 0.95077 0.99925 1.02462 1.23063 0.92980 0.95484 0.92082 1.67713 1.40612 0.98579 1.12627 1.22992 0.89580 0.97539 0.92451 1.20969 0.92340 0.97879 0.94729 1.20884 1.00868 0.90636 1.12231 1.18879 0.88289 0.87690 0.95754 1.84010 1.19709 1.25807 1.75375 1.21466 0.78379 0.95105 1.51586 0.88515 1.25389 1.00854 0.94163 0.96108 1.70063 1.36670 0.97775 1.43412 0.85723 0.79851 0.78126 0.79488 1.19230 1.20146 1.19217 0.93527 0.93497 0.89039 0.85908 0.87511 0.78455 0.83140 0.83683 0.81997 0.82561 0.85810 0.84448 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.81 101.05 0.99 1.41 16 2 O -0.30 -6.21 10.28 -34.21 -0.35 -6.57 16 3 C 0.05 1.07 6.70 -39.12 -0.26 0.81 16 4 C -0.13 -2.23 8.77 -39.03 -0.34 -2.57 16 5 C -0.15 -2.47 5.87 -105.03 -0.62 -3.09 16 6 C 0.15 2.13 10.74 -14.68 -0.16 1.97 16 7 N -0.26 -4.09 10.15 32.14 0.33 -3.76 16 8 N -0.58 -7.12 6.22 30.52 0.19 -6.93 16 9 C 0.58 7.69 7.90 -12.36 -0.10 7.60 16 10 O -0.50 -8.75 16.76 5.28 0.09 -8.66 16 11 C -0.18 -1.76 5.89 -104.82 -0.62 -2.38 16 12 C -0.01 -0.12 9.72 -38.86 -0.38 -0.50 16 13 C -0.18 -1.05 10.10 -39.50 -0.40 -1.45 16 14 C 0.12 0.76 11.17 -17.46 -0.20 0.57 16 15 N -0.49 -4.15 10.35 -12.90 -0.13 -4.28 16 16 C 0.13 1.09 10.71 -17.12 -0.18 0.91 16 17 C -0.04 -0.73 9.57 -39.16 -0.37 -1.11 16 18 C -0.23 -4.85 9.14 -39.48 -0.36 -5.21 16 19 C 0.15 3.60 6.67 -38.82 -0.26 3.34 16 20 O -0.15 -4.18 9.53 -14.27 -0.14 -4.32 16 21 C -0.39 -10.59 9.48 30.88 0.29 -10.29 16 22 H 0.10 2.40 5.19 -52.49 -0.27 2.13 16 23 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 24 N -0.85 -24.20 13.67 55.48 0.76 -23.45 16 25 Si 0.94 19.96 29.55 -169.99 -5.02 14.94 16 26 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 27 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 28 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 29 H 0.05 0.55 7.65 -51.93 -0.40 0.15 16 30 H 0.05 0.55 7.67 -51.93 -0.40 0.16 16 31 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.12 1.59 6.28 -52.48 -0.33 1.26 16 33 H 0.11 1.04 8.02 -52.49 -0.42 0.62 16 34 H 0.38 3.07 6.72 -182.60 -1.23 1.85 16 35 H 0.15 1.23 7.74 -52.49 -0.41 0.82 16 36 H 0.15 0.43 8.06 -52.49 -0.42 0.01 16 37 H 0.16 0.52 8.06 -52.49 -0.42 0.10 16 38 H 0.16 0.87 6.42 -52.48 -0.34 0.54 16 39 H 0.12 2.29 7.54 -52.49 -0.40 1.89 16 40 H 0.14 2.91 5.62 -52.49 -0.29 2.61 16 41 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 366.97 15.07 5.53 5.53 Total: -1.00 -35.65 366.97 -6.69 -42.34 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -4.88 Total: 4.13 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -3.06 Total: -8.98 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 1.14 Total: -38.42 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.40 Total: -19.54 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.65 -6.69 -42.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254513774.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.372 kcal (2) G-P(sol) polarization free energy of solvation -35.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds