Wall clock time and date at job start Tue Mar 31 2020 06:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35953 * 116.99616 * 2 1 4 4 C 1.38182 * 120.01144 * 0.30671 * 3 2 1 5 5 C 1.39768 * 119.85672 * 180.22884 * 4 3 2 6 6 C 1.47337 * 120.06744 * 179.76641 * 5 4 3 7 7 N 1.29862 * 120.00430 * 179.72289 * 6 5 4 8 8 N 1.40096 * 120.00474 * 179.97438 * 7 6 5 9 9 C 1.34781 * 120.00065 * 179.97438 * 8 7 6 10 10 O 1.21592 * 119.99938 * 0.02562 * 9 8 7 11 11 C 1.47777 * 119.99868 * 180.02562 * 9 8 7 12 12 C 1.40056 * 120.56038 * 179.72053 * 11 9 8 13 13 C 1.38345 * 118.28407 * 179.77600 * 12 11 9 14 14 C 1.38363 * 119.30820 * 0.50053 * 13 12 11 15 15 N 1.31930 * 121.08428 * 359.73883 * 14 13 12 16 16 C 1.31685 * 121.88279 * 0.02562 * 15 14 13 17 17 C 1.39833 * 119.86686 * 359.48952 * 5 4 3 18 18 C 1.37765 * 120.01621 * 0.23170 * 17 5 4 19 19 C 1.38968 * 120.14369 * 0.02562 * 18 17 5 20 20 O 1.35692 * 119.93353 * 180.02562 * 19 18 17 21 21 C 1.34789 * 117.00162 * 354.37316 * 20 19 18 22 22 H 1.07997 * 119.99459 * 5.07496 * 21 20 19 23 23 C 1.38625 * 119.99947 * 185.06894 * 21 20 19 24 24 N 1.31575 * 120.00183 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99598 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47070 * 60.00148 * 25 23 21 27 27 H 1.48500 * 109.46571 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.46950 * 299.99564 * 25 23 21 29 29 H 1.09005 * 109.46990 * 299.99607 * 1 2 3 30 30 H 1.09001 * 109.47238 * 59.99397 * 1 2 3 31 31 H 1.08999 * 109.46700 * 180.02562 * 1 2 3 32 32 H 1.08004 * 120.07000 * 359.96566 * 4 3 2 33 33 H 1.08002 * 120.00183 * 359.71890 * 6 5 4 34 34 H 0.96999 * 120.00111 * 0.02562 * 8 7 6 35 35 H 1.07993 * 120.85685 * 0.02562 * 12 11 9 36 36 H 1.08001 * 120.34586 * 180.22074 * 13 12 11 37 37 H 1.08002 * 119.45653 * 179.76484 * 14 13 12 38 38 H 1.08005 * 119.71884 * 179.97438 * 16 15 14 39 39 H 1.08002 * 119.99793 * 180.25268 * 17 5 4 40 40 H 1.08001 * 119.92908 * 180.02562 * 18 17 5 41 41 H 0.96998 * 119.99808 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2937 2.3704 0.0064 5 6 1.9315 3.6140 0.0015 6 6 1.1337 4.8528 0.0031 7 7 1.7276 6.0076 0.0041 8 7 0.9691 7.1855 0.0050 9 6 1.5855 8.3840 0.0065 10 8 2.8000 8.4431 0.0065 11 6 0.7853 9.6264 0.0081 12 6 1.4136 10.8781 0.0155 13 6 0.6190 12.0105 0.0120 14 6 -0.7577 11.8719 0.0118 15 7 -1.3222 10.6795 0.0099 16 6 -0.6092 9.5724 0.0085 17 6 3.3282 3.6803 0.0010 18 6 4.0732 2.5215 0.0005 19 6 3.4396 1.2846 -0.0001 20 8 4.1775 0.1459 -0.0001 21 6 5.5134 0.2823 -0.1173 22 1 5.9571 1.2669 -0.1232 23 6 6.3176 -0.8412 -0.2302 24 7 5.7769 -2.0407 -0.2234 25 14 8.1690 -0.6520 -0.3919 26 1 8.7009 0.0514 0.8029 27 1 8.7963 -1.9940 -0.4958 28 1 8.4813 0.1367 -1.6107 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 0.2151 2.3153 0.0109 33 1 0.0550 4.8004 0.0035 34 1 0.0002 7.1384 0.0054 35 1 2.4907 10.9572 0.0198 36 1 1.0685 12.9926 0.0139 37 1 -1.3804 12.7544 0.0129 38 1 -1.1079 8.6143 0.0073 39 1 3.8233 4.6402 0.0014 40 1 5.1519 2.5743 0.0005 41 1 6.3397 -2.8268 -0.3020 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000254513774.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:26 Heat of formation + Delta-G solvation = -6.995784 kcal Electronic energy + Delta-G solvation = -26947.843531 eV Core-core repulsion = 22794.794732 eV Total energy + Delta-G solvation = -4153.048799 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.65639 -41.26875 -40.07293 -39.27357 -38.38978 -37.01095 -34.43784 -33.90291 -33.52317 -32.20953 -31.20677 -30.23464 -27.91476 -27.41402 -25.88262 -24.70543 -24.19384 -23.27427 -22.05123 -21.70612 -19.92898 -19.62212 -18.99359 -18.45231 -17.88204 -17.36624 -17.09842 -16.62768 -16.62085 -16.40585 -16.32239 -16.17709 -15.55014 -15.44847 -15.24641 -14.99613 -14.87897 -14.82623 -14.18722 -13.97130 -13.89379 -13.50651 -13.22980 -13.03184 -12.96967 -12.73796 -12.54877 -12.21230 -12.04046 -11.86953 -11.56578 -11.46238 -11.09859 -11.04554 -10.87031 -10.56116 -10.36458 -10.17770 -9.44334 -8.56762 -8.47427 -6.12059 -0.53986 -0.03589 0.14564 0.56692 1.30551 1.33539 1.35887 1.48768 1.51780 1.91006 2.17102 2.60347 2.77494 2.84724 3.14221 3.15875 3.36826 3.48509 3.70387 3.72712 3.84530 3.93394 3.96977 4.22754 4.28353 4.37475 4.38641 4.47850 4.53633 4.59999 4.67606 4.71595 4.81029 4.94345 4.95107 5.05665 5.11618 5.35920 5.49190 5.51887 5.61189 5.90636 5.97359 6.00026 6.41828 6.66232 6.77492 6.95774 7.31927 7.74558 8.73925 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016402 B = 0.001994 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.717624 B =14041.672124 C =15728.307382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.343 6.343 3 C 0.043 3.957 4 C -0.112 4.112 5 C -0.113 4.113 6 C 0.158 3.842 7 N -0.293 5.293 8 N -0.568 5.568 9 C 0.578 3.422 10 O -0.553 6.553 11 C -0.198 4.198 12 C -0.028 4.028 13 C -0.167 4.167 14 C 0.125 3.875 15 N -0.507 5.507 16 C 0.138 3.862 17 C -0.058 4.058 18 C -0.223 4.223 19 C 0.106 3.894 20 O -0.210 6.210 21 C -0.416 4.416 22 H 0.103 0.897 23 C -0.019 4.019 24 N -0.911 5.911 25 Si 1.017 2.983 26 H -0.258 1.258 27 H -0.270 1.270 28 H -0.258 1.258 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.177 0.823 33 H 0.166 0.834 34 H 0.402 0.598 35 H 0.144 0.856 36 H 0.178 0.822 37 H 0.196 0.804 38 H 0.180 0.820 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.832 24.597 0.261 30.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.258 6.258 3 C -0.002 4.002 4 C -0.133 4.133 5 C -0.117 4.117 6 C -0.050 4.050 7 N -0.099 5.099 8 N -0.311 5.311 9 C 0.367 3.633 10 O -0.429 6.429 11 C -0.205 4.205 12 C -0.054 4.054 13 C -0.186 4.186 14 C -0.031 4.031 15 N -0.215 5.215 16 C -0.020 4.020 17 C -0.078 4.078 18 C -0.243 4.243 19 C 0.053 3.947 20 O -0.115 6.115 21 C -0.492 4.492 22 H 0.121 0.879 23 C -0.218 4.218 24 N -0.548 5.548 25 Si 0.836 3.164 26 H -0.182 1.182 27 H -0.194 1.194 28 H -0.182 1.182 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.124 0.876 32 H 0.194 0.806 33 H 0.182 0.818 34 H 0.244 0.756 35 H 0.162 0.838 36 H 0.195 0.805 37 H 0.213 0.787 38 H 0.197 0.803 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.040 24.552 0.268 29.887 hybrid contribution 0.742 -0.665 -0.046 0.998 sum -16.298 23.887 0.222 28.919 Atomic orbital electron populations 1.23336 0.76785 1.05050 1.02549 1.86216 1.23266 1.26491 1.89818 1.18264 0.88634 0.86100 1.07207 1.21102 1.00691 0.88584 1.02942 1.17876 0.91847 0.90799 1.11166 1.24448 0.99199 0.88708 0.92630 1.75060 1.24729 0.93512 1.16580 1.46560 1.08827 1.02706 1.73009 1.18313 0.87209 0.82409 0.75392 1.90793 1.15627 1.87223 1.49273 1.20735 0.95667 0.93107 1.10985 1.21963 1.02053 0.91036 0.90351 1.22535 0.94837 1.00426 1.00831 1.23702 0.93592 0.95930 0.89862 1.67815 1.40932 0.99294 1.13503 1.23274 0.88705 0.98682 0.91361 1.21073 0.93760 0.96906 0.96101 1.20948 1.00785 0.91076 1.11489 1.19546 0.90025 0.87624 0.97514 1.83993 1.19987 1.27668 1.79817 1.21856 0.79052 0.95718 1.52551 0.87948 1.26588 1.05923 0.93578 0.95683 1.70205 1.38435 0.98652 1.47519 0.84669 0.73416 0.78381 0.79894 1.18188 1.19429 1.18235 0.90978 0.91042 0.87621 0.80558 0.81769 0.75605 0.83825 0.80502 0.78686 0.80308 0.85484 0.85572 0.91710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.81 113.37 1.11 1.53 16 2 O -0.34 -14.17 10.28 -79.05 -0.81 -14.98 16 3 C 0.04 1.79 6.70 22.57 0.15 1.95 16 4 C -0.11 -3.37 8.77 22.63 0.20 -3.17 16 5 C -0.11 -3.48 5.87 -20.13 -0.12 -3.60 16 6 C 0.16 3.60 10.74 87.38 0.94 4.54 16 7 N -0.29 -8.15 10.15 -52.22 -0.53 -8.68 16 8 N -0.57 -12.05 6.22 -175.62 -1.09 -13.14 16 9 C 0.58 14.47 7.90 86.77 0.69 15.15 16 10 O -0.55 -19.30 16.76 -4.00 -0.07 -19.36 16 11 C -0.20 -3.47 5.89 -20.00 -0.12 -3.59 16 12 C -0.03 -0.41 9.72 22.74 0.22 -0.19 16 13 C -0.17 -1.40 10.10 22.33 0.23 -1.18 16 14 C 0.12 1.08 11.17 84.71 0.95 2.02 16 15 N -0.51 -6.77 10.35 -194.72 -2.01 -8.79 16 16 C 0.14 1.81 10.71 85.03 0.91 2.72 16 17 C -0.06 -2.18 9.57 22.54 0.22 -1.96 16 18 C -0.22 -10.04 9.14 22.33 0.20 -9.83 16 19 C 0.11 5.32 6.67 22.76 0.15 5.47 16 20 O -0.21 -12.80 9.53 -7.71 -0.07 -12.88 16 21 C -0.42 -24.50 9.48 67.91 0.64 -23.86 16 22 H 0.10 5.54 5.19 -2.91 -0.02 5.53 16 23 C -0.02 -1.09 5.49 84.82 0.47 -0.62 16 24 N -0.91 -56.30 13.67 21.61 0.30 -56.00 16 25 Si 1.02 43.45 29.55 68.60 2.03 45.47 16 26 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 27 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 28 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 29 H 0.07 1.39 7.65 -2.38 -0.02 1.37 16 30 H 0.07 1.39 7.67 -2.39 -0.02 1.37 16 31 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.18 3.39 6.28 -2.91 -0.02 3.37 16 33 H 0.17 1.91 8.02 -2.91 -0.02 1.89 16 34 H 0.40 4.67 6.72 -213.32 -1.43 3.24 16 35 H 0.14 2.28 7.74 -2.91 -0.02 2.26 16 36 H 0.18 0.30 8.06 -2.91 -0.02 0.28 16 37 H 0.20 0.28 8.06 -2.91 -0.02 0.26 16 38 H 0.18 1.24 6.42 -2.91 -0.02 1.22 16 39 H 0.13 4.70 7.54 -2.91 -0.02 4.67 16 40 H 0.13 5.79 5.62 -2.91 -0.02 5.78 16 41 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -88.74 366.97 4.25 -84.50 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -0.32 Total: 18.49 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: 6.84 Total: -14.63 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -3.34 Total: -86.61 kcal Atomic # 8 Polarization: -46.27 SS G_CDS: -0.95 Total: -47.22 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -88.74 4.25 -84.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254513774.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.501 kcal (2) G-P(sol) polarization free energy of solvation -88.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds