Wall clock time and date at job start Tue Mar 31 2020 06:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38309 * 119.96018 * 2 1 4 4 C 1.38272 * 120.14681 * 180.02562 * 3 2 1 5 5 C 1.38126 * 120.07563 * 0.25962 * 4 3 2 6 6 C 1.38897 * 119.91977 * 359.48656 * 5 4 3 7 7 N 1.39675 * 120.07023 * 180.27834 * 6 5 4 8 8 C 1.46502 * 119.99909 * 180.23352 * 7 6 5 9 9 C 1.50702 * 109.47127 * 89.99958 * 8 7 6 10 10 H 1.07997 * 119.99624 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99898 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99881 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00136 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46805 * 59.99668 * 13 11 9 15 15 H 1.48492 * 109.47401 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47109 * 300.00106 * 13 11 9 17 17 C 1.46500 * 120.00214 * 0.23136 * 7 6 5 18 18 C 1.53000 * 109.47125 * 89.99923 * 17 7 6 19 19 O 1.42907 * 109.47069 * 65.00236 * 18 17 7 20 20 C 1.42898 * 114.00048 * 180.02562 * 19 18 17 21 21 C 1.52997 * 109.46899 * 179.97438 * 20 19 18 22 22 S 1.81399 * 109.46726 * 179.97438 * 21 20 19 23 23 C 1.81403 * 101.92239 * 180.02562 * 22 21 20 24 24 O 1.42100 * 108.57930 * 294.48469 * 22 21 20 25 25 O 1.42101 * 108.57963 * 65.51354 * 22 21 20 26 26 C 1.38076 * 119.96425 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47418 * 89.99973 * 1 2 3 28 28 H 1.09002 * 109.47050 * 210.00265 * 1 2 3 29 29 H 1.09008 * 109.47029 * 329.99684 * 1 2 3 30 30 H 1.07996 * 119.93124 * 0.04553 * 3 2 1 31 31 H 1.08002 * 119.95912 * 179.97438 * 4 3 2 32 32 H 1.07990 * 120.03828 * 179.74673 * 5 4 3 33 33 H 1.09000 * 109.47224 * 209.99789 * 8 7 6 34 34 H 1.09004 * 109.46892 * 329.99738 * 8 7 6 35 35 H 0.96996 * 119.99907 * 179.97438 * 12 11 9 36 36 H 1.08999 * 109.47368 * 210.00292 * 17 7 6 37 37 H 1.09002 * 109.46986 * 330.00512 * 17 7 6 38 38 H 1.09001 * 109.47211 * 184.99949 * 18 17 7 39 39 H 1.09005 * 109.47396 * 305.00202 * 18 17 7 40 40 H 1.09001 * 109.46927 * 299.99930 * 20 19 18 41 41 H 1.09003 * 109.46887 * 59.99525 * 20 19 18 42 42 H 1.08995 * 109.46944 * 299.99576 * 21 20 19 43 43 H 1.08999 * 109.47247 * 60.00313 * 21 20 19 44 44 H 1.09000 * 109.47140 * 59.99572 * 23 22 21 45 45 H 1.08990 * 109.47556 * 180.02562 * 23 22 21 46 46 H 1.09007 * 109.46634 * 300.00275 * 23 22 21 47 47 H 1.08007 * 120.03505 * 359.95661 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1983 0.0000 4 6 3.5804 1.2028 -0.0005 5 6 4.2765 0.0098 -0.0065 6 6 3.5859 -1.1953 -0.0012 7 7 4.2867 -2.4036 -0.0013 8 6 3.5566 -3.6738 -0.0008 9 6 3.3058 -4.1095 -1.4215 10 1 3.6555 -3.5013 -2.2425 11 6 2.6297 -5.2845 -1.6730 12 7 2.2043 -6.0253 -0.6730 13 14 2.3181 -5.8243 -3.4339 14 1 3.6155 -5.9997 -4.1348 15 1 1.5782 -7.1118 -3.4334 16 1 1.5134 -4.7907 -4.1334 17 6 5.7517 -2.4007 -0.0019 18 6 6.2623 -2.3995 1.4404 19 8 5.8869 -3.6213 2.0796 20 6 6.3171 -3.7222 3.4386 21 6 5.8619 -5.0626 4.0193 22 16 6.4087 -5.1910 5.7441 23 6 5.7732 -6.8226 6.2182 24 8 7.8288 -5.2349 5.7669 25 8 5.7327 -4.2019 6.5082 26 6 2.1966 -1.1962 -0.0005 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6560 2.1325 0.0007 31 1 4.1167 2.1402 -0.0010 32 1 5.3564 0.0140 -0.0110 33 1 4.1474 -4.4322 0.5128 34 1 2.6042 -3.5452 0.5135 35 1 1.7283 -6.8518 -0.8499 36 1 6.1165 -3.2900 -0.5158 37 1 6.1130 -1.5101 -0.5160 38 1 7.3484 -2.3078 1.4412 39 1 5.8262 -1.5585 1.9795 40 1 7.4043 -3.6578 3.4812 41 1 5.8818 -2.9086 4.0188 42 1 4.7747 -5.1265 3.9767 43 1 6.2969 -5.8764 3.4391 44 1 6.2107 -7.5845 5.5729 45 1 6.0381 -7.0285 7.2552 46 1 4.6885 -6.8351 6.1112 47 1 1.6566 -2.1316 -0.0002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255187033.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:20 Heat of formation + Delta-G solvation = -85.266488 kcal Electronic energy + Delta-G solvation = -27801.030999 eV Core-core repulsion = 23883.572423 eV Total energy + Delta-G solvation = -3917.458577 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.10680 -37.92037 -37.18104 -36.24166 -35.75504 -32.91453 -32.15305 -31.72193 -30.07520 -29.71557 -28.65006 -26.47402 -25.85658 -23.46918 -22.99487 -22.41004 -20.79320 -19.34744 -19.03591 -17.39197 -16.66890 -16.59491 -16.44187 -16.19513 -15.88869 -15.68004 -15.13404 -14.86764 -14.48735 -14.23310 -13.78423 -13.56546 -13.51253 -13.45309 -13.33141 -12.89112 -12.81270 -12.58190 -12.29004 -12.19354 -12.06655 -11.85138 -11.69379 -11.60921 -11.49058 -11.27575 -11.18902 -10.97617 -10.93896 -10.81563 -10.71395 -10.58678 -10.24126 -9.91219 -9.73307 -9.48064 -8.82985 -8.46392 -8.06881 -6.47840 -6.00115 -4.13463 -0.27399 2.07352 2.32762 2.49761 3.26359 3.28001 3.32167 3.35769 3.80697 3.91591 4.08766 4.41179 4.52565 4.53350 4.54135 4.60989 4.78242 5.13545 5.24534 5.37831 5.38912 5.40253 5.42825 5.43137 5.50356 5.59357 5.67098 5.70938 5.79650 5.87150 6.01777 6.02625 6.19830 6.28520 6.37115 6.53669 6.68389 7.03388 7.10911 7.18793 7.30986 7.37410 7.47398 7.65705 7.84144 8.20995 8.29705 8.53322 8.95204 9.52358 10.98259 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008180 B = 0.003485 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3422.040848 B = 8033.383418 C =10018.708484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.046 4.046 3 C -0.204 4.204 4 C -0.075 4.075 5 C -0.229 4.229 6 C 0.241 3.759 7 N -0.604 5.604 8 C 0.254 3.746 9 C -0.530 4.530 10 H 0.057 0.943 11 C 0.062 3.938 12 N -0.895 5.895 13 Si 0.894 3.106 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.276 1.276 17 C 0.128 3.872 18 C 0.040 3.960 19 O -0.358 6.358 20 C 0.076 3.924 21 C -0.612 4.612 22 S 2.428 3.572 23 C -0.652 4.652 24 O -0.941 6.941 25 O -0.939 6.939 26 C -0.185 4.185 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.043 0.957 34 H 0.030 0.970 35 H 0.263 0.737 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.144 0.856 43 H 0.141 0.859 44 H 0.130 0.870 45 H 0.129 0.871 46 H 0.132 0.868 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.055 3.782 9.935 12.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.047 4.047 3 C -0.224 4.224 4 C -0.094 4.094 5 C -0.252 4.252 6 C 0.135 3.865 7 N -0.308 5.308 8 C 0.134 3.866 9 C -0.569 4.569 10 H 0.075 0.925 11 C -0.139 4.139 12 N -0.535 5.535 13 Si 0.721 3.279 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.202 1.202 17 C 0.003 3.997 18 C -0.038 4.038 19 O -0.277 6.277 20 C -0.002 4.002 21 C -0.741 4.741 22 S 2.610 3.390 23 C -0.802 4.802 24 O -0.939 6.939 25 O -0.936 6.936 26 C -0.208 4.208 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.123 0.877 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.061 0.939 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.162 0.838 43 H 0.159 0.841 44 H 0.149 0.851 45 H 0.148 0.852 46 H 0.150 0.850 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.433 3.827 10.385 12.801 hybrid contribution -0.535 -0.929 -1.421 1.780 sum 5.898 2.898 8.964 11.114 Atomic orbital electron populations 1.20750 0.92175 1.01976 1.01857 1.19596 0.95166 0.92826 0.97107 1.20519 0.94008 0.96605 1.11297 1.20640 0.94027 0.96569 0.98130 1.20529 0.98799 0.91570 1.14320 1.17923 0.91430 0.86033 0.91131 1.47079 1.03341 1.04669 1.75744 1.19282 0.91984 0.78864 0.96433 1.21590 1.36246 1.06175 0.92855 0.92504 1.24919 0.95554 0.96332 0.97128 1.69925 1.38590 1.14295 1.30652 0.86631 0.78387 0.77812 0.85031 1.20321 1.21281 1.20196 1.21316 0.82445 1.02962 0.93009 1.23239 0.97969 0.86774 0.95795 1.88115 1.78474 1.38398 1.22737 1.21903 0.98489 0.93681 0.86149 1.30438 1.14086 1.06660 1.22865 1.07573 0.75853 0.77866 0.77756 1.30221 1.13948 1.23506 1.12531 1.93596 1.27345 1.86742 1.86184 1.93609 1.76316 1.55931 1.67734 1.20756 0.92575 0.98261 1.09159 0.91596 0.91740 0.92291 0.87699 0.87437 0.87166 0.93906 0.95164 0.92784 0.89665 0.90117 0.93088 0.93028 0.92211 0.92095 0.83765 0.84067 0.85101 0.85238 0.84968 0.85103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.62 10.01 36.01 0.36 -1.26 16 2 C -0.05 -0.81 5.88 -104.66 -0.62 -1.43 16 3 C -0.20 -3.30 9.70 -39.54 -0.38 -3.69 16 4 C -0.07 -1.19 10.04 -39.61 -0.40 -1.58 16 5 C -0.23 -3.95 9.21 -39.38 -0.36 -4.31 16 6 C 0.24 4.84 6.55 -83.79 -0.55 4.29 16 7 N -0.60 -12.52 2.55 -173.11 -0.44 -12.96 16 8 C 0.25 6.27 4.73 -5.19 -0.02 6.24 16 9 C -0.53 -14.27 9.39 -34.44 -0.32 -14.59 16 10 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 11 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 12 N -0.90 -25.25 13.29 55.43 0.74 -24.52 16 13 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 C 0.13 2.17 5.57 -4.04 -0.02 2.15 16 18 C 0.04 0.60 6.28 37.16 0.23 0.84 16 19 O -0.36 -5.99 9.17 -35.23 -0.32 -6.32 16 20 C 0.08 0.99 5.95 37.16 0.22 1.21 16 21 C -0.61 -6.30 6.18 37.16 0.23 -6.07 16 22 S 2.43 21.90 5.36 -107.50 -0.58 21.32 16 23 C -0.65 -3.67 10.62 101.05 1.07 -2.60 16 24 O -0.94 -11.48 18.10 -57.83 -1.05 -12.52 16 25 O -0.94 -11.98 18.10 -57.83 -1.05 -13.03 16 26 C -0.19 -3.79 8.86 -39.39 -0.35 -4.14 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 29 H 0.06 0.73 8.09 -51.92 -0.42 0.31 16 30 H 0.10 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.11 1.66 6.14 -52.49 -0.32 1.34 16 33 H 0.04 1.13 7.12 -51.93 -0.37 0.76 16 34 H 0.03 0.80 6.20 -51.93 -0.32 0.48 16 35 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.09 1.54 8.07 -51.93 -0.42 1.12 16 37 H 0.08 1.19 6.19 -51.93 -0.32 0.86 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.14 1.45 8.14 -51.93 -0.42 1.03 16 43 H 0.14 1.26 8.14 -51.92 -0.42 0.83 16 44 H 0.13 0.54 8.14 -51.92 -0.42 0.12 16 45 H 0.13 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.13 0.60 8.14 -51.92 -0.42 0.18 16 47 H 0.13 2.97 6.14 -52.48 -0.32 2.64 16 LS Contribution 401.51 15.07 6.05 6.05 Total: -1.00 -35.66 401.51 -10.21 -45.87 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -7.53 Total: 3.32 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: -1.01 Total: -23.34 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.29 Total: -37.48 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -2.42 Total: -31.87 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 21.90 SS G_CDS: -0.58 Total: 21.32 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.66 -10.21 -45.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255187033.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.401 kcal (2) G-P(sol) polarization free energy of solvation -35.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds