Wall clock time and date at job start Tue Mar 31 2020 05:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30883 * 1 3 3 Si 1.86803 * 119.99766 * 2 1 4 4 H 1.48499 * 109.46962 * 269.99753 * 3 2 1 5 5 H 1.48501 * 109.47271 * 29.99412 * 3 2 1 6 6 H 1.48497 * 109.47227 * 149.99783 * 3 2 1 7 7 C 1.39901 * 120.00285 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99798 * 199.37281 * 7 2 1 9 9 C 1.41176 * 120.00137 * 19.37126 * 7 2 1 10 10 C 1.41061 * 120.23768 * 37.23624 * 9 7 2 11 11 F 1.35098 * 120.13261 * 359.97438 * 10 9 7 12 12 C 1.37794 * 119.73420 * 180.25411 * 10 9 7 13 13 C 1.38830 * 120.22960 * 359.45850 * 12 10 9 14 14 F 1.35097 * 119.76106 * 180.25535 * 13 12 10 15 15 C 1.39021 * 120.48703 * 0.27465 * 13 12 10 16 16 Br 1.89095 * 119.87445 * 179.97438 * 15 13 12 17 17 C 1.37683 * 120.25443 * 0.02562 * 15 13 12 18 18 Br 1.89103 * 120.11384 * 180.02562 * 17 15 13 19 19 H 0.96992 * 120.00557 * 0.02562 * 1 2 3 20 20 H 1.08007 * 119.88903 * 179.73769 * 12 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4903 2.0464 -1.4001 5 1 1.4401 2.6528 0.6999 6 1 3.5403 1.4403 0.7001 7 6 2.0084 -1.2115 0.0005 8 1 3.0426 -1.2378 0.3108 9 6 1.3625 -2.3998 -0.4045 10 6 0.4329 -2.3770 -1.4651 11 9 0.1554 -1.2166 -2.0989 12 6 -0.1954 -3.5419 -1.8484 13 6 0.0923 -4.7365 -1.2022 14 9 -0.5254 -5.8739 -1.5891 15 6 1.0111 -4.7708 -0.1594 16 35 1.3893 -6.4073 0.7092 17 6 1.6459 -3.6176 0.2440 18 35 2.8955 -3.6689 1.6624 19 1 -0.4850 0.8399 -0.0004 20 1 -0.9108 -3.5265 -2.6574 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263622849.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:21 Heat of formation + Delta-G solvation = -82.291795 kcal Electronic energy + Delta-G solvation = -13978.928410 eV Core-core repulsion = 10903.439821 eV Total energy + Delta-G solvation = -3075.488589 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 339.861 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.63043 -49.30487 -39.30136 -35.73568 -33.27096 -32.60577 -30.81371 -29.38694 -27.10643 -23.26017 -23.16272 -19.58160 -18.62312 -17.99942 -17.13352 -16.59498 -16.31195 -15.87885 -15.75364 -14.97702 -14.60072 -14.24094 -13.83500 -13.55388 -13.14302 -13.01623 -12.55805 -12.14254 -11.89317 -11.62382 -11.52296 -11.36965 -11.00356 -10.44175 -9.57338 -9.31194 -8.89076 -6.62680 0.10810 0.31184 0.49366 1.02695 1.39179 1.44339 1.53403 2.15247 2.32124 3.04260 3.39448 3.79832 4.01996 4.44021 4.76687 4.86590 5.04031 5.26431 5.32700 5.74656 6.17759 6.42767 6.59943 8.11271 Molecular weight = 339.86amu Principal moments of inertia in cm(-1) A = 0.019638 B = 0.007529 C = 0.005584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.442328 B = 3717.826294 C = 5012.925530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.042 3.958 3 Si 0.979 3.021 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.250 1.250 7 C -0.455 4.455 8 H 0.104 0.896 9 C 0.078 3.922 10 C 0.059 3.941 11 F -0.134 7.134 12 C -0.142 4.142 13 C 0.010 3.990 14 F -0.139 7.139 15 C -0.073 4.073 16 Br -0.028 7.028 17 C -0.147 4.147 18 Br -0.032 7.032 19 H 0.298 0.702 20 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.218 -4.775 1.647 5.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.179 4.179 3 Si 0.799 3.201 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.173 1.173 7 C -0.482 4.482 8 H 0.122 0.878 9 C 0.071 3.929 10 C 0.037 3.963 11 F -0.113 7.113 12 C -0.163 4.163 13 C -0.013 4.013 14 F -0.118 7.118 15 C -0.155 4.155 16 Br 0.057 6.943 17 C -0.230 4.230 18 Br 0.054 6.946 19 H 0.109 0.891 20 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.573 -5.264 2.500 6.836 hybrid contribution -0.556 1.010 -0.759 1.380 sum 3.018 -4.254 1.741 5.499 Atomic orbital electron populations 1.69779 1.09276 1.32139 1.30230 1.26714 0.95358 1.04600 0.91222 0.85200 0.79550 0.75636 0.79739 1.18724 1.19033 1.17339 1.19844 0.99662 0.90943 1.37720 0.87824 1.17601 0.91787 0.92843 0.90647 1.17561 1.02734 0.80891 0.95146 1.91361 1.92487 1.47366 1.80061 1.20720 1.02480 0.90338 1.02783 1.16285 1.01591 0.82589 1.00805 1.91406 1.81619 1.48138 1.90612 1.21579 1.02052 0.92331 0.99560 1.96526 1.94436 1.25264 1.78034 1.21224 1.06170 0.94146 1.01435 1.96373 1.55659 1.98804 1.43804 0.89086 0.83136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.00 11.14 21.82 0.24 -37.76 14 2 C 0.04 1.89 4.52 85.24 0.39 2.28 14 3 Si 0.98 34.95 29.60 68.60 2.03 36.98 14 4 H -0.26 -9.29 7.11 99.48 0.71 -8.58 14 5 H -0.27 -9.06 7.11 99.48 0.71 -8.35 14 6 H -0.25 -8.59 7.11 99.48 0.71 -7.88 14 7 C -0.46 -21.65 8.10 23.39 0.19 -21.46 14 8 H 0.10 4.74 7.31 -2.91 -0.02 4.72 14 9 C 0.08 3.75 5.39 -21.23 -0.11 3.63 14 10 C 0.06 2.78 6.68 22.86 0.15 2.93 14 11 F -0.13 -6.52 14.30 44.97 0.64 -5.88 14 12 C -0.14 -6.05 9.98 22.31 0.22 -5.83 14 13 C 0.01 0.44 7.29 22.60 0.16 0.60 14 14 F -0.14 -5.48 16.71 44.97 0.75 -4.73 14 15 C -0.07 -3.08 6.22 22.33 0.14 -2.94 14 16 Br -0.03 -0.99 31.80 -20.37 -0.65 -1.64 14 17 C -0.15 -6.57 6.28 22.78 0.14 -6.42 14 18 Br -0.03 -1.23 30.84 -20.37 -0.63 -1.86 14 19 H 0.30 12.99 8.30 -92.71 -0.77 12.22 14 20 H 0.15 5.55 8.06 -2.91 -0.02 5.53 14 Total: -1.00 -49.43 233.83 4.98 -44.44 By element: Atomic # 1 Polarization: -3.66 SS G_CDS: 1.31 Total: -2.35 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: 1.28 Total: -27.20 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.24 Total: -37.76 kcal Atomic # 9 Polarization: -12.01 SS G_CDS: 1.39 Total: -10.61 kcal Atomic # 14 Polarization: 34.95 SS G_CDS: 2.03 Total: 36.98 kcal Atomic # 35 Polarization: -2.23 SS G_CDS: -1.28 Total: -3.50 kcal Total: -49.43 4.98 -44.44 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263622849.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.847 kcal (2) G-P(sol) polarization free energy of solvation -49.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds