Wall clock time and date at job start Tue Mar 31 2020 05:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86795 * 120.00382 * 2 1 4 4 H 1.48500 * 109.47201 * 270.00167 * 3 2 1 5 5 H 1.48507 * 109.46961 * 29.99843 * 3 2 1 6 6 H 1.48500 * 109.47170 * 149.99911 * 3 2 1 7 7 C 1.39909 * 119.99554 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00330 * 160.08460 * 7 2 1 9 9 C 1.41225 * 120.00127 * 340.36632 * 7 2 1 10 10 C 1.40898 * 120.22565 * 132.14734 * 9 7 2 11 11 Br 1.89106 * 120.09596 * 359.95051 * 10 9 7 12 12 C 1.37621 * 119.80453 * 179.97438 * 10 9 7 13 13 C 1.38886 * 120.25520 * 0.02562 * 12 10 9 14 14 F 1.35097 * 119.77128 * 179.97438 * 13 12 10 15 15 C 1.39097 * 120.45235 * 359.97438 * 13 12 10 16 16 F 1.35095 * 119.90794 * 179.97438 * 15 13 12 17 17 C 1.37815 * 120.19044 * 359.72962 * 15 13 12 18 18 Br 1.89105 * 120.13328 * 180.28298 * 17 15 13 19 19 H 0.97013 * 119.99547 * 5.70715 * 1 2 3 20 20 H 1.08006 * 119.86967 * 180.02562 * 12 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 2.4903 2.0463 -1.4001 5 1 1.4402 2.6526 0.7000 6 1 3.5403 1.4400 0.7001 7 6 2.0082 -1.2117 0.0005 8 1 3.0397 -1.2399 -0.3180 9 6 1.3636 -2.3990 0.4120 10 6 1.4640 -3.5677 -0.3685 11 35 2.4628 -3.5527 -1.9742 12 6 0.8328 -4.7200 0.0410 13 6 0.0976 -4.7344 1.2192 14 9 -0.5185 -5.8709 1.6116 15 6 -0.0087 -3.5867 1.9979 16 9 -0.7271 -3.6129 3.1417 17 6 0.6209 -2.4243 1.6085 18 35 0.4820 -0.8671 2.6725 19 1 -0.4850 0.8360 -0.0836 20 1 0.9095 -5.6167 -0.5563 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263623271.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:05 Heat of formation + Delta-G solvation = -70.867422 kcal Electronic energy + Delta-G solvation = -14003.156542 eV Core-core repulsion = 10928.163351 eV Total energy + Delta-G solvation = -3074.993191 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 339.861 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.52726 -47.58380 -37.76225 -33.92953 -31.43827 -30.48497 -29.05536 -27.80860 -25.29309 -21.80182 -21.16944 -18.04249 -16.57468 -16.38593 -15.70636 -15.39465 -15.05742 -14.07762 -13.60862 -13.44849 -13.03924 -12.53167 -12.22083 -12.08043 -11.42155 -11.29554 -10.77055 -10.53704 -10.38255 -10.25675 -9.79897 -9.32030 -9.22760 -8.50630 -7.67756 -7.44288 -7.05320 -4.85870 1.82417 2.07235 2.56256 2.89012 2.97273 2.99503 3.04576 3.77149 4.07299 4.73490 4.86279 5.35692 5.73320 6.14251 6.26567 6.60889 6.69452 6.91405 7.14471 7.51554 7.95021 8.16712 8.43656 9.89022 Molecular weight = 339.86amu Principal moments of inertia in cm(-1) A = 0.012642 B = 0.010427 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.315539 B = 2684.613846 C = 4706.023452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.089 3.911 3 Si 0.902 3.098 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.254 1.254 7 C -0.446 4.446 8 H 0.102 0.898 9 C 0.163 3.837 10 C -0.149 4.149 11 Br -0.066 7.066 12 C -0.057 4.057 13 C -0.061 4.061 14 F -0.151 7.151 15 C 0.134 3.866 16 F -0.137 7.137 17 C -0.154 4.154 18 Br -0.044 7.044 19 H 0.291 0.709 20 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.547 -1.026 -0.566 2.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.135 4.135 3 Si 0.726 3.274 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.177 1.177 7 C -0.473 4.473 8 H 0.120 0.880 9 C 0.156 3.844 10 C -0.230 4.230 11 Br 0.019 6.981 12 C -0.079 4.079 13 C -0.083 4.083 14 F -0.130 7.130 15 C 0.111 3.889 16 F -0.115 7.115 17 C -0.237 4.237 18 Br 0.042 6.958 19 H 0.102 0.898 20 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.592 -0.304 -0.642 2.687 hybrid contribution -0.300 0.179 0.320 0.474 sum 2.291 -0.126 -0.322 2.317 Atomic orbital electron populations 1.69780 1.07857 1.30917 1.29054 1.25688 0.94655 1.01041 0.92110 0.86309 0.81179 0.80343 0.79598 1.19116 1.19610 1.17695 1.19517 0.99723 0.90186 1.37827 0.87974 1.16927 0.87975 0.91875 0.87652 1.21492 1.08958 0.97046 0.95525 1.96392 1.72101 1.99110 1.30536 1.20461 0.95743 0.97631 0.94028 1.16723 1.09823 0.82364 0.99392 1.91365 1.82116 1.48345 1.91157 1.17263 0.94583 0.93583 0.83476 1.91439 1.75614 1.97075 1.47382 1.21565 1.12662 0.90119 0.99310 1.96337 1.97333 1.37004 1.65153 0.89799 0.85389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -17.65 11.25 55.55 0.63 -17.03 14 2 C 0.09 2.01 3.55 -17.34 -0.06 1.95 14 3 Si 0.90 17.43 29.61 -169.99 -5.03 12.40 14 4 H -0.27 -5.04 7.11 56.52 0.40 -4.64 14 5 H -0.27 -5.19 7.11 56.52 0.40 -4.79 14 6 H -0.25 -4.86 7.11 56.52 0.40 -4.46 14 7 C -0.45 -10.33 7.53 -37.82 -0.28 -10.61 14 8 H 0.10 2.30 7.70 -52.49 -0.40 1.90 14 9 C 0.16 3.83 5.20 -106.77 -0.56 3.27 14 10 C -0.15 -3.23 6.28 -38.80 -0.24 -3.47 14 11 Br -0.07 -1.25 32.52 -68.01 -2.21 -3.46 14 12 C -0.06 -1.17 9.74 -39.57 -0.39 -1.56 14 13 C -0.06 -1.33 7.32 -39.02 -0.29 -1.61 14 14 F -0.15 -3.19 17.17 2.25 0.04 -3.15 14 15 C 0.13 3.08 7.26 -39.42 -0.29 2.79 14 16 F -0.14 -3.07 16.62 2.25 0.04 -3.03 14 17 C -0.15 -3.63 5.88 -38.75 -0.23 -3.85 14 18 Br -0.04 -0.96 29.08 -68.01 -1.98 -2.94 14 19 H 0.29 6.28 8.31 -40.81 -0.34 5.94 14 20 H 0.13 2.28 8.06 -52.48 -0.42 1.86 14 LS Contribution 234.39 15.07 3.53 3.53 Total: -1.00 -23.70 234.39 -7.28 -30.98 By element: Atomic # 1 Polarization: -4.23 SS G_CDS: 0.04 Total: -4.20 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -2.33 Total: -13.11 kcal Atomic # 7 Polarization: -17.65 SS G_CDS: 0.63 Total: -17.03 kcal Atomic # 9 Polarization: -6.25 SS G_CDS: 0.08 Total: -6.18 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.03 Total: 12.40 kcal Atomic # 35 Polarization: -2.21 SS G_CDS: -4.19 Total: -6.40 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -23.70 -7.28 -30.98 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263623271.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.890 kcal (2) G-P(sol) polarization free energy of solvation -23.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds