Wall clock time and date at job start Tue Mar 31 2020 05:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30851 * 1 3 3 Si 1.86803 * 120.00003 * 2 1 4 4 H 1.48502 * 109.46817 * 359.97438 * 3 2 1 5 5 H 1.48508 * 109.47096 * 119.99723 * 3 2 1 6 6 H 1.48495 * 109.47271 * 239.99940 * 3 2 1 7 7 C 1.39933 * 120.00427 * 179.72524 * 2 1 3 8 8 H 1.08004 * 120.00485 * 155.59329 * 7 2 1 9 9 C 1.41259 * 119.99466 * 335.59338 * 7 2 1 10 10 C 1.40989 * 120.25583 * 324.21791 * 9 7 2 11 11 F 1.35108 * 120.13706 * 359.97438 * 10 9 7 12 12 C 1.37982 * 119.72796 * 180.02562 * 10 9 7 13 13 Br 1.89098 * 119.87516 * 180.02562 * 12 10 9 14 14 C 1.38615 * 120.24664 * 0.02562 * 12 10 9 15 15 C 1.38828 * 120.52098 * 359.97438 * 14 12 10 16 16 F 1.35103 * 119.86234 * 179.97438 * 15 14 12 17 17 C 1.37905 * 120.26984 * 359.71737 * 15 14 12 18 18 Br 1.89101 * 120.12902 * 180.30241 * 17 15 14 19 19 H 0.96997 * 119.99901 * 174.43403 * 1 2 3 20 20 H 1.08001 * 119.73278 * 179.97438 * 14 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 1.2775 2.7464 -0.0006 5 1 3.0963 1.6965 1.2126 6 1 3.0963 1.6965 -1.2124 7 6 2.0083 -1.2118 0.0058 8 1 3.0159 -1.2554 -0.3805 9 6 1.3966 -2.3780 0.5169 10 6 0.5265 -2.2972 1.6233 11 9 0.2733 -1.1026 2.2014 12 6 -0.0647 -3.4434 2.1140 13 35 -1.2330 -3.3397 3.5973 14 6 0.1947 -4.6704 1.5238 15 6 1.0498 -4.7619 0.4339 16 9 1.2936 -5.9648 -0.1308 17 6 1.6472 -3.6292 -0.0779 18 35 2.8046 -3.7572 -1.5678 19 1 -0.4850 -0.8361 -0.0815 20 1 -0.2722 -5.5623 1.9149 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263624696.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:12 Heat of formation + Delta-G solvation = -76.340870 kcal Electronic energy + Delta-G solvation = -14068.736212 eV Core-core repulsion = 10993.505674 eV Total energy + Delta-G solvation = -3075.230538 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 339.861 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.25572 -47.70381 -37.71961 -34.36808 -31.95041 -30.05530 -29.50578 -27.49699 -25.59614 -21.83593 -21.27760 -18.51052 -16.53980 -16.33006 -16.19432 -15.11652 -14.43548 -14.30626 -13.63493 -13.49895 -13.04291 -12.64582 -12.32269 -11.76651 -11.58809 -11.27441 -10.81039 -10.73196 -10.51992 -10.03843 -9.77838 -9.52067 -9.35667 -9.19764 -8.07236 -7.66135 -7.62415 -5.02754 1.65902 2.02676 2.09285 2.63946 3.01431 3.06202 3.23410 3.78962 3.93081 4.64626 5.03788 5.22400 5.66373 6.08360 6.42362 6.49312 6.76842 6.91718 7.17365 7.45107 7.55636 7.95834 8.22946 9.62871 Molecular weight = 339.86amu Principal moments of inertia in cm(-1) A = 0.012578 B = 0.008423 C = 0.005172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.552065 B = 3323.544349 C = 5412.552094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.747 5.747 2 C 0.035 3.965 3 Si 1.070 2.930 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.467 4.467 8 H 0.103 0.897 9 C 0.093 3.907 10 C 0.025 3.975 11 F -0.123 7.123 12 C -0.047 4.047 13 Br -0.063 7.063 14 C -0.248 4.248 15 C 0.165 3.835 16 F -0.141 7.141 17 C -0.211 4.211 18 Br -0.061 7.061 19 H 0.298 0.702 20 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.893 -3.446 1.476 3.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.365 5.365 2 C -0.192 4.192 3 Si 0.891 3.109 4 H -0.193 1.193 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.493 4.493 8 H 0.121 0.879 9 C 0.086 3.914 10 C 0.002 3.998 11 F -0.102 7.102 12 C -0.128 4.128 13 Br 0.022 6.978 14 C -0.270 4.270 15 C 0.142 3.858 16 F -0.120 7.120 17 C -0.293 4.293 18 Br 0.023 6.977 19 H 0.111 0.889 20 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.604 -1.803 1.524 2.437 hybrid contribution 0.059 -1.881 0.037 1.883 sum 0.663 -3.685 1.561 4.056 Atomic orbital electron populations 1.70435 1.08170 1.34390 1.23555 1.27275 0.95460 1.04773 0.91645 0.83538 0.75759 0.73130 0.78467 1.19302 1.19421 1.19551 1.20819 1.02964 0.92637 1.32836 0.87918 1.17076 0.91206 0.92416 0.90698 1.17413 1.05799 0.79945 0.96671 1.91471 1.92695 1.43038 1.82988 1.21205 1.00229 0.95014 0.96397 1.96546 1.61947 1.99055 1.40216 1.19838 1.09070 0.96436 1.01661 1.16959 0.96870 0.79088 0.92870 1.91437 1.93009 1.43378 1.84144 1.21326 1.11459 0.94817 1.01679 1.96377 1.62999 1.98428 1.39860 0.88935 0.85295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -18.45 11.97 55.55 0.66 -17.78 14 2 C 0.03 0.81 4.35 -17.34 -0.08 0.73 14 3 Si 1.07 20.04 30.00 -169.99 -5.10 14.94 14 4 H -0.27 -5.04 7.11 56.52 0.40 -4.63 14 5 H -0.27 -4.91 7.11 56.52 0.40 -4.51 14 6 H -0.27 -4.74 7.11 56.52 0.40 -4.34 14 7 C -0.47 -11.12 8.10 -37.80 -0.31 -11.42 14 8 H 0.10 2.37 7.32 -52.48 -0.38 1.98 14 9 C 0.09 2.23 5.04 -106.74 -0.54 1.69 14 10 C 0.03 0.60 6.11 -38.63 -0.24 0.36 14 11 F -0.12 -3.03 13.79 2.25 0.03 -3.00 14 12 C -0.05 -1.02 6.22 -39.54 -0.25 -1.26 14 13 Br -0.06 -1.15 33.26 -68.01 -2.26 -3.41 14 14 C -0.25 -5.09 9.76 -39.22 -0.38 -5.47 14 15 C 0.16 3.54 7.25 -39.49 -0.29 3.25 14 16 F -0.14 -2.87 16.71 2.25 0.04 -2.83 14 17 C -0.21 -4.78 6.28 -38.74 -0.24 -5.03 14 18 Br -0.06 -1.24 31.85 -68.01 -2.17 -3.40 14 19 H 0.30 7.61 7.03 -40.82 -0.29 7.32 14 20 H 0.13 2.36 8.06 -52.49 -0.42 1.93 14 LS Contribution 234.41 15.07 3.53 3.53 Total: -1.00 -23.87 234.41 -7.46 -31.33 By element: Atomic # 1 Polarization: -2.35 SS G_CDS: 0.11 Total: -2.24 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -2.31 Total: -17.14 kcal Atomic # 7 Polarization: -18.45 SS G_CDS: 0.66 Total: -17.78 kcal Atomic # 9 Polarization: -5.90 SS G_CDS: 0.07 Total: -5.83 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.10 Total: 14.94 kcal Atomic # 35 Polarization: -2.39 SS G_CDS: -4.43 Total: -6.81 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -23.87 -7.46 -31.33 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263624696.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.009 kcal (2) G-P(sol) polarization free energy of solvation -23.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds