Wall clock time and date at job start Tue Mar 31 2020 05:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38235 * 119.99812 * 2 1 4 4 C 1.38233 * 120.00057 * 179.97438 * 3 2 1 5 5 C 1.38235 * 119.99737 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00092 * 179.97438 * 5 4 3 7 7 C 1.53009 * 110.66107 * 351.66151 * 6 5 4 8 8 C 1.54231 * 110.61000 * 114.59286 * 6 5 4 9 9 C 1.51306 * 103.55668 * 118.52020 * 8 6 5 10 10 O 1.21225 * 125.39915 * 180.02562 * 9 8 6 11 11 N 1.33876 * 109.20533 * 359.97438 * 9 8 6 12 12 C 1.46507 * 122.76228 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47281 * 90.02663 * 12 11 9 14 14 H 1.08997 * 109.46938 * 55.00158 * 13 12 11 15 15 C 1.47206 * 109.46987 * 294.99919 * 13 12 11 16 16 N 7.08023 * 131.98071 * 169.43172 * 2 1 3 17 17 C 1.53004 * 109.47128 * 175.00188 * 13 12 11 18 18 C 1.50692 * 109.46955 * 185.00062 * 17 13 12 19 19 H 1.08002 * 120.00418 * 359.97438 * 18 17 13 20 20 C 1.37884 * 119.99909 * 179.97438 * 18 17 13 21 21 N 1.31514 * 119.99570 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00094 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47082 * 89.99756 * 22 20 18 24 24 H 1.48493 * 109.47059 * 210.00149 * 22 20 18 25 25 H 1.48501 * 109.46865 * 330.00177 * 22 20 18 26 26 C 1.33878 * 114.47625 * 0.27204 * 11 9 8 27 27 O 1.21221 * 125.39359 * 179.70823 * 26 11 9 28 28 C 1.38231 * 120.00002 * 0.25185 * 5 4 3 29 29 C 1.38233 * 120.00331 * 359.47294 * 28 5 4 30 30 H 1.08998 * 109.47664 * 89.99993 * 1 2 3 31 31 H 1.09004 * 109.46859 * 209.99942 * 1 2 3 32 32 H 1.09003 * 109.47122 * 329.99655 * 1 2 3 33 33 H 1.08003 * 119.99796 * 359.97438 * 3 2 1 34 34 H 1.08003 * 120.00093 * 179.97438 * 4 3 2 35 35 H 1.08995 * 109.47147 * 182.92851 * 7 6 5 36 36 H 1.08997 * 109.46740 * 302.93347 * 7 6 5 37 37 H 1.09003 * 109.47082 * 62.93234 * 7 6 5 38 38 H 1.09001 * 110.60230 * 0.02562 * 8 6 5 39 39 H 1.09003 * 110.73954 * 237.10263 * 8 6 5 40 40 H 1.08999 * 109.46947 * 330.02281 * 12 11 9 41 41 H 1.09001 * 109.46770 * 210.03043 * 12 11 9 42 42 H 1.09004 * 109.46899 * 305.00109 * 17 13 12 43 43 H 1.08994 * 109.46819 * 64.99926 * 17 13 12 44 44 H 0.97002 * 119.99232 * 179.97438 * 21 20 18 45 45 H 1.08005 * 119.99947 * 179.72810 * 28 5 4 46 46 H 1.07995 * 120.00554 * 180.29541 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0001 0.0005 6 6 5.7786 0.0000 0.0005 7 6 6.3185 1.4166 -0.2071 8 6 6.3215 -0.6007 1.3132 9 6 7.1037 -1.8112 0.8524 10 8 7.7010 -2.5786 1.5762 11 7 7.0307 -1.9011 -0.4814 12 6 7.6849 -2.9696 -1.2409 13 6 6.7259 -4.1527 -1.3863 14 1 5.7922 -3.8109 -1.8330 15 6 6.4530 -4.7291 -0.0595 16 7 6.2428 -5.1739 0.9653 17 6 7.3610 -5.2168 -2.2837 18 6 6.3699 -6.3256 -2.5268 19 1 5.3855 -6.2765 -2.0852 20 6 6.7197 -7.4028 -3.3132 21 7 7.9182 -7.4623 -3.8515 22 14 5.4914 -8.7776 -3.6141 23 1 4.6907 -8.4695 -4.8262 24 1 6.2190 -10.0566 -3.8134 25 1 4.5880 -8.8995 -2.4418 26 6 6.3151 -0.9314 -1.0643 27 8 6.1252 -0.8188 -2.2563 28 6 3.5805 -1.1970 -0.0053 29 6 2.1982 -1.1972 0.0000 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6581 2.1325 -0.0004 34 1 4.1205 2.1326 0.0001 35 1 7.4070 1.3870 -0.2558 36 1 5.9240 1.8228 -1.1384 37 1 6.0092 2.0489 0.6251 38 1 5.5015 -0.9000 1.9660 39 1 6.9757 0.1083 1.8207 40 1 8.5830 -3.2923 -0.7143 41 1 7.9568 -2.5986 -2.2292 42 1 7.6443 -4.7674 -3.2355 43 1 8.2471 -5.6221 -1.7953 44 1 8.1644 -8.2203 -4.4044 45 1 4.1206 -2.1324 -0.0097 46 1 1.6582 -2.1324 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270448967.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:04 Heat of formation + Delta-G solvation = -24.971323 kcal Electronic energy + Delta-G solvation = -29677.101241 eV Core-core repulsion = 25724.531969 eV Total energy + Delta-G solvation = -3952.569271 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.36135 -39.63728 -38.52712 -36.90149 -36.14327 -35.09962 -33.71566 -32.38563 -31.58896 -31.16836 -28.84260 -27.10343 -27.02301 -24.97800 -23.91907 -22.66044 -22.36639 -21.88182 -20.71646 -19.42475 -17.61711 -17.41111 -16.58376 -16.39569 -16.18122 -15.78170 -15.42899 -15.15912 -15.04488 -14.56866 -14.31089 -14.06901 -13.99628 -13.87634 -13.71962 -13.53972 -13.23224 -13.05234 -12.66984 -12.56824 -12.45540 -12.16371 -12.13672 -12.07488 -11.91686 -11.75747 -11.50232 -11.26019 -11.12746 -11.09774 -10.89038 -10.75843 -10.51893 -10.37364 -9.98333 -9.92042 -9.51233 -9.20830 -9.12249 -8.73532 -8.47574 -6.11784 -4.15191 1.01517 1.20171 1.49106 2.48611 2.66502 3.28563 3.35218 3.39647 3.42605 3.58385 3.62989 3.92085 3.97725 4.15394 4.26655 4.39238 4.55618 4.67365 4.68820 4.70497 4.80154 5.08269 5.16426 5.18622 5.21238 5.26374 5.33337 5.33784 5.35062 5.36329 5.44153 5.47227 5.49796 5.55361 5.71561 5.76902 5.84260 5.85546 6.19077 6.20569 6.30276 6.38239 6.39291 6.76271 6.82835 7.29779 7.36262 7.45440 7.75931 7.82566 8.18384 8.40484 8.88045 9.50219 10.99164 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011161 B = 0.003552 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.042224 B = 7880.915060 C = 9178.644236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.083 4.083 3 C -0.120 4.120 4 C -0.101 4.101 5 C -0.075 4.075 6 C -0.054 4.054 7 C -0.134 4.134 8 C -0.149 4.149 9 C 0.520 3.480 10 O -0.465 6.465 11 N -0.574 5.574 12 C 0.103 3.897 13 C -0.005 4.005 14 H 0.104 0.896 15 C 0.229 3.771 16 N -0.452 5.452 17 C 0.035 3.965 18 C -0.527 4.527 19 H 0.056 0.944 20 C 0.064 3.936 21 N -0.890 5.890 22 Si 0.892 3.108 23 H -0.278 1.278 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.537 3.463 27 O -0.462 6.462 28 C -0.103 4.103 29 C -0.112 4.112 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.100 0.900 41 H 0.114 0.886 42 H 0.043 0.957 43 H 0.030 0.970 44 H 0.263 0.737 45 H 0.118 0.882 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.077 23.219 7.608 25.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.083 4.083 3 C -0.138 4.138 4 C -0.119 4.119 5 C -0.075 4.075 6 C -0.057 4.057 7 C -0.191 4.191 8 C -0.189 4.189 9 C 0.308 3.692 10 O -0.335 6.335 11 N -0.316 5.316 12 C -0.018 4.018 13 C -0.028 4.028 14 H 0.122 0.878 15 C -0.088 4.088 16 N -0.128 5.128 17 C -0.004 4.004 18 C -0.565 4.565 19 H 0.074 0.926 20 C -0.138 4.138 21 N -0.528 5.528 22 Si 0.720 3.280 23 H -0.204 1.204 24 H -0.211 1.211 25 H -0.199 1.199 26 C 0.324 3.676 27 O -0.331 6.331 28 C -0.122 4.122 29 C -0.130 4.130 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.142 0.858 34 H 0.148 0.852 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.138 0.862 39 H 0.142 0.858 40 H 0.119 0.881 41 H 0.132 0.868 42 H 0.061 0.939 43 H 0.048 0.952 44 H 0.073 0.927 45 H 0.136 0.864 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.030 22.045 8.772 25.048 hybrid contribution -0.487 -0.954 -0.718 1.290 sum -8.516 21.091 8.054 24.129 Atomic orbital electron populations 1.20814 0.91116 1.02795 1.02521 1.19987 0.96207 0.93179 0.98914 1.21003 0.93955 0.97542 1.01295 1.21032 0.94088 0.97350 0.99436 1.19118 0.91591 0.93989 1.02814 1.20318 0.93878 0.97728 0.93794 1.21830 1.01481 0.92095 1.03730 1.22737 1.01894 0.96474 0.97758 1.20760 0.80201 0.86535 0.81656 1.90838 1.40538 1.44352 1.57731 1.46919 1.47949 1.26986 1.09795 1.22109 0.96219 0.85291 0.98151 1.19569 1.00891 0.95534 0.86791 0.87801 1.29005 0.92901 0.92938 0.93984 1.81048 1.09285 1.09615 1.12855 1.19156 0.96485 0.91181 0.93536 1.21065 0.99517 1.04815 1.31092 0.92553 1.24937 0.95308 0.98140 0.95456 1.69934 1.18961 1.31020 1.32912 0.86574 0.81254 0.81485 0.78694 1.20389 1.21065 1.19876 1.20459 0.76945 0.81005 0.89228 1.90779 1.55370 1.72333 1.14619 1.21024 0.94722 0.97378 0.99035 1.21028 0.93795 0.97922 1.00220 0.90978 0.91437 0.91535 0.85841 0.85211 0.91351 0.90430 0.90305 0.86166 0.85841 0.88127 0.86821 0.93932 0.95214 0.92708 0.86437 0.85688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 10.01 36.01 0.36 -0.45 16 2 C -0.08 -0.78 5.88 -104.62 -0.62 -1.39 16 3 C -0.12 -1.01 9.70 -39.58 -0.38 -1.40 16 4 C -0.10 -0.87 9.06 -39.58 -0.36 -1.23 16 5 C -0.07 -0.78 4.71 -104.63 -0.49 -1.27 16 6 C -0.05 -0.52 0.91 -155.87 -0.14 -0.67 16 7 C -0.13 -0.91 7.09 37.16 0.26 -0.65 16 8 C -0.15 -1.40 6.16 -26.94 -0.17 -1.57 16 9 C 0.52 7.21 7.37 -11.09 -0.08 7.13 16 10 O -0.46 -8.16 16.50 5.61 0.09 -8.06 16 11 N -0.57 -8.06 2.45 -115.35 -0.28 -8.34 16 12 C 0.10 1.62 5.01 -4.04 -0.02 1.60 16 13 C -0.01 -0.10 2.42 -93.40 -0.23 -0.33 16 14 H 0.10 1.95 8.14 -51.93 -0.42 1.53 16 15 C 0.23 4.91 12.15 -20.73 -0.25 4.66 16 16 N -0.45 -10.43 18.48 42.19 0.78 -9.65 16 17 C 0.04 0.82 4.42 -27.88 -0.12 0.70 16 18 C -0.53 -14.21 8.60 -34.44 -0.30 -14.51 16 19 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 20 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 22 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 26 C 0.54 7.11 5.95 -11.09 -0.07 7.05 16 27 O -0.46 -7.38 17.47 5.61 0.10 -7.28 16 28 C -0.10 -1.25 8.87 -39.59 -0.35 -1.60 16 29 C -0.11 -1.23 9.70 -39.58 -0.38 -1.61 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 32 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 33 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 34 H 0.13 0.79 6.07 -52.48 -0.32 0.47 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.56 7.80 -51.93 -0.41 0.15 16 37 H 0.08 0.35 7.41 -51.93 -0.38 -0.04 16 38 H 0.12 1.10 7.58 -51.93 -0.39 0.70 16 39 H 0.12 0.80 7.75 -51.93 -0.40 0.40 16 40 H 0.10 1.56 7.83 -51.93 -0.41 1.16 16 41 H 0.11 1.63 7.82 -51.93 -0.41 1.22 16 42 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.12 1.58 7.75 -52.48 -0.41 1.18 16 46 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 391.43 15.07 5.90 5.90 Total: -1.00 -33.99 391.43 -7.59 -41.58 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -6.46 Total: -1.93 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -3.43 Total: -3.85 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: 1.23 Total: -42.85 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: 0.19 Total: -15.35 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.99 -7.59 -41.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270448967.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.608 kcal (2) G-P(sol) polarization free energy of solvation -33.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds