Wall clock time and date at job start Tue Mar 31 2020 05:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38231 * 120.00206 * 2 1 4 4 C 1.38234 * 120.00521 * 180.02562 * 3 2 1 5 5 C 1.38236 * 119.99607 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00305 * 179.97438 * 5 4 3 7 7 C 1.52991 * 110.54380 * 182.36212 * 6 5 4 8 8 C 1.54226 * 110.60211 * 59.34019 * 6 5 4 9 9 C 1.51319 * 103.55660 * 241.48521 * 8 6 5 10 10 O 1.21222 * 125.39859 * 180.27267 * 9 8 6 11 11 N 1.33880 * 109.20436 * 0.02562 * 9 8 6 12 12 C 1.46501 * 122.75941 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47414 * 90.02422 * 12 11 9 14 14 H 1.09002 * 109.47221 * 54.99566 * 13 12 11 15 15 C 1.47199 * 109.47306 * 294.99559 * 13 12 11 16 16 N 9.31676 * 165.71469 * 7.25967 * 2 1 3 17 17 C 1.53006 * 109.47100 * 174.99954 * 13 12 11 18 18 C 1.50700 * 109.46932 * 185.00107 * 17 13 12 19 19 H 1.08002 * 120.00112 * 359.97438 * 18 17 13 20 20 C 1.37874 * 119.99781 * 179.97438 * 18 17 13 21 21 N 1.31516 * 120.00055 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00149 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46951 * 59.99882 * 22 20 18 24 24 H 1.48494 * 109.47110 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47090 * 299.99893 * 22 20 18 26 26 C 1.33872 * 114.47721 * 359.97438 * 11 9 8 27 27 O 1.21224 * 125.40058 * 180.02562 * 26 11 9 28 28 C 1.38235 * 120.00241 * 0.25040 * 5 4 3 29 29 C 1.38233 * 119.99851 * 179.97438 * 2 1 3 30 30 H 1.08992 * 109.47044 * 89.99839 * 1 2 3 31 31 H 1.09000 * 109.46964 * 210.00097 * 1 2 3 32 32 H 1.08998 * 109.46340 * 329.99724 * 1 2 3 33 33 H 1.08007 * 120.00035 * 359.97438 * 3 2 1 34 34 H 1.07998 * 120.00591 * 179.97438 * 4 3 2 35 35 H 1.09007 * 109.47267 * 181.39388 * 7 6 5 36 36 H 1.09004 * 109.46818 * 301.39008 * 7 6 5 37 37 H 1.09000 * 109.47668 * 61.39401 * 7 6 5 38 38 H 1.09003 * 110.60551 * 122.97326 * 8 6 5 39 39 H 1.08999 * 110.61268 * 0.02562 * 8 6 5 40 40 H 1.09007 * 109.46636 * 210.02413 * 12 11 9 41 41 H 1.08993 * 109.47040 * 330.01840 * 12 11 9 42 42 H 1.09004 * 109.46780 * 304.99829 * 17 13 12 43 43 H 1.08998 * 109.46969 * 64.99868 * 17 13 12 44 44 H 0.97002 * 120.00112 * 180.02562 * 21 20 18 45 45 H 1.07993 * 120.00461 * 179.72712 * 28 5 4 46 46 H 1.08001 * 120.00430 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.2717 0.0000 -0.0016 6 6 5.7788 -0.0001 -0.0028 7 6 6.3155 -1.4315 -0.0629 8 6 6.3225 0.7355 1.2390 9 6 7.1042 1.8909 0.6528 10 8 7.7061 2.7272 1.2913 11 7 7.0303 1.8399 -0.6830 12 6 7.6847 2.8219 -1.5512 13 6 9.0981 2.3430 -1.8883 14 1 9.0496 1.3439 -2.3215 15 6 9.9097 2.3066 -0.6608 16 7 10.5357 2.2805 0.2905 17 6 9.7362 3.3042 -2.8932 18 6 11.0787 2.7678 -3.3186 19 1 11.4408 1.8348 -2.9125 20 6 11.8447 3.4680 -4.2263 21 7 11.4036 4.6039 -4.7212 22 14 13.5091 2.8035 -4.7531 23 1 13.3328 1.4712 -5.3848 24 1 14.1278 3.7358 -5.7294 25 1 14.3897 2.6750 -3.5642 26 6 6.3101 0.8172 -1.1601 27 8 6.1148 0.5829 -2.3333 28 6 3.5806 -1.1972 -0.0074 29 6 2.1982 -1.1971 0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3632 0.8900 0.5139 33 1 1.6582 2.1325 -0.0004 34 1 4.1206 2.1324 -0.0010 35 1 7.4051 -1.4124 -0.0379 36 1 5.9424 -1.9956 0.7920 37 1 5.9816 -1.9064 -0.9854 38 1 6.9776 0.0823 1.8154 39 1 5.5030 1.1011 1.8578 40 1 7.1100 2.9339 -2.4707 41 1 7.7391 3.7817 -1.0376 42 1 9.0899 3.3993 -3.7658 43 1 9.8660 4.2818 -2.4289 44 1 11.9423 5.0963 -5.3600 45 1 4.1205 -2.1324 -0.0127 46 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270448971.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:11 Heat of formation + Delta-G solvation = -25.086440 kcal Electronic energy + Delta-G solvation = -29299.390574 eV Core-core repulsion = 25346.816311 eV Total energy + Delta-G solvation = -3952.574263 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.36848 -39.71534 -38.53694 -36.88257 -36.15664 -35.09159 -33.70522 -32.41047 -31.65834 -31.23805 -28.83733 -27.14770 -27.03538 -24.97318 -23.95188 -22.71153 -22.42039 -21.88706 -20.76703 -19.43393 -17.62032 -17.25327 -16.95150 -16.36085 -16.08673 -15.77207 -15.55908 -15.13822 -15.10192 -14.57359 -14.32589 -14.10436 -14.06566 -13.94041 -13.74527 -13.47380 -13.37641 -12.98335 -12.64307 -12.56754 -12.52964 -12.26146 -12.12634 -12.07974 -11.92873 -11.75737 -11.49349 -11.31811 -11.15903 -11.11073 -10.89614 -10.77314 -10.52044 -10.37111 -9.99142 -9.92213 -9.51102 -9.22023 -9.21157 -8.81574 -8.46993 -6.11295 -4.14898 0.92740 1.10389 1.48904 2.48188 2.66166 3.30785 3.34857 3.34996 3.38478 3.57724 3.62452 3.89879 3.98710 4.12435 4.25057 4.39365 4.49760 4.58346 4.65745 4.67973 4.71763 5.01935 5.11071 5.17893 5.20416 5.25169 5.26652 5.33497 5.34456 5.35303 5.39787 5.44634 5.45244 5.49198 5.74020 5.74630 5.77276 5.77823 6.10296 6.20879 6.22129 6.28454 6.38733 6.66880 6.82498 7.29566 7.36514 7.45762 7.75733 7.82742 8.18697 8.41166 8.88159 9.50443 10.99572 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019262 B = 0.002659 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.308215 B =10527.907356 C =10855.432348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.084 4.084 3 C -0.114 4.114 4 C -0.107 4.107 5 C -0.072 4.072 6 C -0.054 4.054 7 C -0.137 4.137 8 C -0.149 4.149 9 C 0.520 3.480 10 O -0.464 6.464 11 N -0.573 5.573 12 C 0.104 3.896 13 C -0.005 4.005 14 H 0.105 0.895 15 C 0.229 3.771 16 N -0.453 5.453 17 C 0.035 3.965 18 C -0.528 4.528 19 H 0.056 0.944 20 C 0.064 3.936 21 N -0.890 5.890 22 Si 0.893 3.107 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.277 1.277 26 C 0.537 3.463 27 O -0.462 6.462 28 C -0.100 4.100 29 C -0.118 4.118 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.124 0.876 34 H 0.118 0.882 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.113 0.887 41 H 0.100 0.900 42 H 0.043 0.957 43 H 0.029 0.971 44 H 0.264 0.736 45 H 0.131 0.869 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.283 -11.800 10.414 28.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.084 4.084 3 C -0.132 4.132 4 C -0.125 4.125 5 C -0.072 4.072 6 C -0.058 4.058 7 C -0.195 4.195 8 C -0.189 4.189 9 C 0.308 3.692 10 O -0.334 6.334 11 N -0.316 5.316 12 C -0.017 4.017 13 C -0.027 4.027 14 H 0.123 0.877 15 C -0.088 4.088 16 N -0.129 5.129 17 C -0.004 4.004 18 C -0.566 4.566 19 H 0.074 0.926 20 C -0.139 4.139 21 N -0.529 5.529 22 Si 0.721 3.279 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.202 1.202 26 C 0.324 3.676 27 O -0.331 6.331 28 C -0.118 4.118 29 C -0.136 4.136 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.142 0.858 34 H 0.136 0.864 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.132 0.868 41 H 0.119 0.881 42 H 0.061 0.939 43 H 0.048 0.952 44 H 0.074 0.926 45 H 0.149 0.851 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -22.051 -11.326 11.413 27.290 hybrid contribution 0.902 -0.123 -0.830 1.232 sum -21.149 -11.449 10.583 26.275 Atomic orbital electron populations 1.20810 0.91122 1.02802 1.02493 1.19984 0.96189 0.93226 0.99035 1.20983 0.93737 0.97790 1.00718 1.20985 0.94576 0.97329 0.99659 1.19162 0.91683 0.94011 1.02368 1.20324 0.93719 0.98197 0.93533 1.21858 1.01821 0.91840 1.03931 1.22747 1.01847 0.96341 0.97931 1.20760 0.80066 0.86467 0.81879 1.90839 1.39867 1.38633 1.64088 1.46910 1.47327 1.27862 1.09506 1.22108 0.92855 0.91377 0.95409 1.19563 0.89625 1.04756 0.88754 0.87711 1.29103 0.93549 0.92613 0.93529 1.81140 1.09943 1.09371 1.12481 1.19156 0.95988 0.93165 0.92044 1.21031 1.02371 1.07621 1.25536 0.92585 1.24940 0.98197 0.94785 0.95947 1.69923 1.38082 1.14494 1.30354 0.86626 0.83954 0.78880 0.78473 1.20009 1.21109 1.20227 1.20445 0.76887 0.80301 0.89936 1.90780 1.55852 1.69158 1.17319 1.21105 0.94103 0.97612 0.98947 1.21035 0.93969 0.97624 1.01011 0.91014 0.91496 0.91493 0.85801 0.86350 0.91155 0.90249 0.90360 0.85896 0.86080 0.86850 0.88146 0.93926 0.95231 0.92647 0.85085 0.85801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.62 10.01 36.01 0.36 -0.26 16 2 C -0.08 -0.65 5.88 -104.62 -0.62 -1.26 16 3 C -0.11 -0.96 9.70 -39.59 -0.38 -1.35 16 4 C -0.11 -1.02 8.62 -39.58 -0.34 -1.36 16 5 C -0.07 -0.67 4.77 -104.62 -0.50 -1.17 16 6 C -0.05 -0.53 0.90 -155.87 -0.14 -0.67 16 7 C -0.14 -1.08 7.09 37.15 0.26 -0.82 16 8 C -0.15 -1.40 6.11 -26.94 -0.16 -1.56 16 9 C 0.52 7.18 7.38 -11.08 -0.08 7.10 16 10 O -0.46 -8.13 16.48 5.61 0.09 -8.04 16 11 N -0.57 -8.04 2.45 -115.34 -0.28 -8.32 16 12 C 0.10 1.62 5.01 -4.04 -0.02 1.60 16 13 C 0.00 -0.09 2.42 -93.41 -0.23 -0.31 16 14 H 0.11 1.96 8.14 -51.93 -0.42 1.53 16 15 C 0.23 4.93 12.15 -20.66 -0.25 4.68 16 16 N -0.45 -10.48 18.48 42.28 0.78 -9.70 16 17 C 0.04 0.82 4.42 -27.88 -0.12 0.70 16 18 C -0.53 -14.24 8.60 -34.44 -0.30 -14.54 16 19 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 22 Si 0.89 21.54 29.54 -169.99 -5.02 16.51 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 26 C 0.54 7.11 6.22 -11.08 -0.07 7.04 16 27 O -0.46 -7.38 17.48 5.61 0.10 -7.29 16 28 C -0.10 -0.80 9.05 -39.58 -0.36 -1.16 16 29 C -0.12 -0.89 9.70 -39.58 -0.38 -1.27 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 32 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 33 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 34 H 0.12 1.11 7.95 -52.49 -0.42 0.70 16 35 H 0.07 0.59 8.14 -51.92 -0.42 0.16 16 36 H 0.08 0.43 7.40 -51.93 -0.38 0.04 16 37 H 0.08 0.63 7.76 -51.93 -0.40 0.23 16 38 H 0.12 0.97 7.75 -51.93 -0.40 0.56 16 39 H 0.12 0.93 7.39 -51.93 -0.38 0.55 16 40 H 0.11 1.63 7.83 -51.92 -0.41 1.22 16 41 H 0.10 1.56 7.83 -51.93 -0.41 1.15 16 42 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 45 H 0.13 0.80 6.01 -52.49 -0.32 0.49 16 46 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 LS Contribution 391.33 15.07 5.90 5.90 Total: -1.00 -34.04 391.33 -7.58 -41.62 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -6.45 Total: -2.87 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -3.43 Total: -2.92 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 1.23 Total: -42.92 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: 0.19 Total: -15.33 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.04 -7.58 -41.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270448971.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.531 kcal (2) G-P(sol) polarization free energy of solvation -34.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds