Wall clock time and date at job start Tue Mar 31 2020 05:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38228 * 120.00183 * 2 1 4 4 C 1.38235 * 120.00374 * 179.97438 * 3 2 1 5 5 C 1.38235 * 119.99808 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00190 * 179.97438 * 5 4 3 7 7 C 1.53003 * 110.54043 * 351.86351 * 6 5 4 8 8 C 1.54228 * 110.60555 * 114.70959 * 6 5 4 9 9 C 1.51316 * 103.55680 * 118.67403 * 8 6 5 10 10 O 1.21226 * 125.39678 * 180.02562 * 9 8 6 11 11 N 1.33874 * 109.20442 * 359.97438 * 9 8 6 12 12 C 1.46504 * 122.76151 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.46982 * 90.02334 * 12 11 9 14 14 H 1.09000 * 109.47011 * 305.00531 * 13 12 11 15 15 C 1.47207 * 109.46748 * 65.00151 * 13 12 11 16 16 N 5.47354 * 125.53387 * 219.60587 * 2 1 3 17 17 C 1.52995 * 109.46974 * 184.99828 * 13 12 11 18 18 C 1.50697 * 109.47057 * 175.00096 * 17 13 12 19 19 H 1.08005 * 120.00028 * 0.02562 * 18 17 13 20 20 C 1.37878 * 120.00314 * 180.02562 * 18 17 13 21 21 N 1.31518 * 119.99428 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00259 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.46603 * 269.99622 * 22 20 18 24 24 H 1.48490 * 109.47255 * 29.99752 * 22 20 18 25 25 H 1.48502 * 109.47001 * 150.00006 * 22 20 18 26 26 C 1.33877 * 114.47727 * 0.26809 * 11 9 8 27 27 O 1.21230 * 125.39947 * 179.70824 * 26 11 9 28 28 C 1.38235 * 120.00044 * 0.26130 * 5 4 3 29 29 C 1.38235 * 119.99998 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47438 * 90.00164 * 1 2 3 31 31 H 1.08998 * 109.47232 * 210.00348 * 1 2 3 32 32 H 1.09004 * 109.47530 * 330.00126 * 1 2 3 33 33 H 1.08004 * 120.00232 * 359.97318 * 3 2 1 34 34 H 1.08004 * 120.00177 * 179.97438 * 4 3 2 35 35 H 1.08994 * 109.47141 * 182.84542 * 7 6 5 36 36 H 1.09002 * 109.46730 * 302.84739 * 7 6 5 37 37 H 1.09001 * 109.46872 * 62.84714 * 7 6 5 38 38 H 1.09002 * 110.60843 * 0.15464 * 8 6 5 39 39 H 1.08998 * 110.73875 * 237.25716 * 8 6 5 40 40 H 1.09000 * 109.47083 * 330.02654 * 12 11 9 41 41 H 1.09001 * 109.46723 * 210.02629 * 12 11 9 42 42 H 1.09004 * 109.47076 * 55.00060 * 17 13 12 43 43 H 1.08999 * 109.47425 * 295.00703 * 17 13 12 44 44 H 0.97001 * 120.00434 * 0.02562 * 21 20 18 45 45 H 1.08002 * 120.00475 * 179.72697 * 28 5 4 46 46 H 1.08004 * 119.99839 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 0.0000 0.0005 6 6 5.7787 -0.0001 0.0005 7 6 6.3155 1.4182 -0.2022 8 6 6.3214 -0.6036 1.3120 9 6 7.1069 -1.8110 0.8484 10 8 7.7050 -2.5791 1.5707 11 7 7.0356 -1.8971 -0.4856 12 6 7.6939 -2.9611 -1.2477 13 6 6.7386 -4.1469 -1.3976 14 1 6.3971 -4.4651 -0.4126 15 6 5.5804 -3.7440 -2.2119 16 7 4.6881 -3.4317 -2.8396 17 6 7.4665 -5.3045 -2.0838 18 6 6.5661 -6.5123 -2.1212 19 1 5.5737 -6.4594 -1.6983 20 6 7.0091 -7.6850 -2.6954 21 7 8.2173 -7.7492 -3.2108 22 14 5.8927 -9.1819 -2.7424 23 1 6.1018 -9.9941 -1.5168 24 1 4.4762 -8.7412 -2.8085 25 1 6.2127 -10.0007 -3.9393 26 6 6.3184 -0.9273 -1.0665 27 8 6.1295 -0.8114 -2.2584 28 6 3.5805 -1.1972 -0.0055 29 6 2.1981 -1.1971 0.0005 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 1.6582 2.1325 -0.0004 34 1 4.1205 2.1325 0.0001 35 1 7.4041 1.3913 -0.2499 36 1 5.9210 1.8264 -1.1328 37 1 6.0038 2.0473 0.6315 38 1 5.5014 -0.9062 1.9632 39 1 6.9733 0.1054 1.8223 40 1 8.5924 -3.2827 -0.7211 41 1 7.9656 -2.5864 -2.2346 42 1 8.3730 -5.5442 -1.5279 43 1 7.7300 -5.0160 -3.1013 44 1 8.7969 -6.9718 -3.1867 45 1 4.1205 -2.1325 -0.0099 46 1 1.6581 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270448973.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:15 Heat of formation + Delta-G solvation = -27.846228 kcal Electronic energy + Delta-G solvation = -29837.371993 eV Core-core repulsion = 25884.678057 eV Total energy + Delta-G solvation = -3952.693937 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.40884 -39.64217 -38.57775 -37.03592 -36.18000 -35.14929 -33.97480 -32.44702 -31.59160 -31.13947 -28.81776 -27.08017 -26.79479 -24.95297 -23.73361 -22.66176 -22.39776 -22.16315 -20.77837 -19.46534 -17.70401 -17.42447 -16.99026 -16.56006 -16.14632 -15.88426 -15.43580 -15.14783 -15.09679 -14.48824 -14.10239 -14.03461 -13.89854 -13.81699 -13.78574 -13.58863 -13.51104 -13.20243 -12.71175 -12.56118 -12.45249 -12.20446 -12.15617 -12.08881 -11.98149 -11.79212 -11.53643 -11.40489 -11.25619 -11.09522 -10.91683 -10.66331 -10.52833 -10.18129 -10.05909 -10.03183 -9.67639 -9.10581 -8.74182 -8.68915 -8.42629 -6.45624 -4.17135 1.02305 1.21653 1.44007 2.42423 2.60873 3.41084 3.42494 3.45698 3.53518 3.58026 3.61268 3.88237 3.94890 4.11649 4.23983 4.48468 4.53980 4.59099 4.68661 4.70359 4.80332 5.06574 5.12677 5.16335 5.20211 5.23565 5.25940 5.32813 5.33055 5.36847 5.37449 5.42273 5.49321 5.55736 5.65920 5.69376 5.84948 5.86262 6.09296 6.19940 6.22330 6.30731 6.40266 6.75022 6.78407 7.02097 7.16495 7.24188 7.70386 7.98069 8.29278 8.38489 8.76388 9.53690 10.95305 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012158 B = 0.003555 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.508708 B = 7873.981078 C = 9251.631654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.082 4.082 3 C -0.120 4.120 4 C -0.102 4.102 5 C -0.076 4.076 6 C -0.053 4.053 7 C -0.134 4.134 8 C -0.149 4.149 9 C 0.526 3.474 10 O -0.473 6.473 11 N -0.574 5.574 12 C 0.103 3.897 13 C 0.002 3.998 14 H 0.105 0.895 15 C 0.225 3.775 16 N -0.443 5.443 17 C 0.021 3.979 18 C -0.606 4.606 19 H 0.051 0.949 20 C 0.022 3.978 21 N -0.907 5.907 22 Si 1.069 2.931 23 H -0.285 1.285 24 H -0.289 1.289 25 H -0.283 1.283 26 C 0.531 3.469 27 O -0.454 6.454 28 C -0.099 4.099 29 C -0.110 4.110 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.113 0.887 41 H 0.099 0.901 42 H 0.033 0.967 43 H 0.020 0.980 44 H 0.270 0.730 45 H 0.114 0.886 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.058 21.801 11.838 25.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.082 4.082 3 C -0.138 4.138 4 C -0.119 4.119 5 C -0.077 4.077 6 C -0.057 4.057 7 C -0.191 4.191 8 C -0.189 4.189 9 C 0.315 3.685 10 O -0.344 6.344 11 N -0.317 5.317 12 C -0.019 4.019 13 C -0.020 4.020 14 H 0.123 0.877 15 C -0.092 4.092 16 N -0.119 5.119 17 C -0.017 4.017 18 C -0.644 4.644 19 H 0.069 0.931 20 C -0.183 4.183 21 N -0.543 5.543 22 Si 0.897 3.103 23 H -0.212 1.212 24 H -0.215 1.215 25 H -0.209 1.209 26 C 0.318 3.682 27 O -0.322 6.322 28 C -0.117 4.117 29 C -0.128 4.128 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.142 0.858 34 H 0.148 0.852 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.131 0.869 41 H 0.117 0.883 42 H 0.051 0.949 43 H 0.038 0.962 44 H 0.080 0.920 45 H 0.132 0.868 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.252 20.319 10.097 24.144 hybrid contribution 0.467 1.192 0.606 1.417 sum -7.785 21.512 10.703 25.257 Atomic orbital electron populations 1.20810 0.91097 1.02769 1.02531 1.19979 0.96219 0.93152 0.98865 1.20991 0.93940 0.97527 1.01378 1.21021 0.94111 0.97294 0.99521 1.19102 0.91550 0.94001 1.03004 1.20310 0.93943 0.97694 0.93724 1.21831 1.01435 0.92111 1.03756 1.22751 1.01897 0.96507 0.97733 1.20728 0.79897 0.86416 0.81479 1.90805 1.40995 1.44640 1.57939 1.46905 1.47853 1.27144 1.09801 1.22100 0.96271 0.85693 0.97787 1.19382 0.88479 0.95851 0.98335 0.87677 1.28826 0.94275 0.92232 0.93887 1.80976 1.11693 1.09827 1.09429 1.19264 0.96096 0.90944 0.95415 1.21925 1.01764 0.97315 1.43371 0.93097 1.25793 0.98231 1.01240 0.93009 1.70776 1.07654 1.33576 1.42261 0.83533 0.74670 0.75160 0.76941 1.21189 1.21509 1.20855 1.20536 0.77137 0.81133 0.89400 1.90815 1.54826 1.71859 1.14736 1.20962 0.94716 0.97200 0.98808 1.21008 0.93797 0.97893 1.00100 0.91011 0.91425 0.91505 0.85833 0.85244 0.91386 0.90543 0.90202 0.85953 0.85705 0.86863 0.88281 0.94906 0.96187 0.91982 0.86774 0.85808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 10.01 36.00 0.36 -0.54 16 2 C -0.08 -0.85 5.88 -104.63 -0.62 -1.46 16 3 C -0.12 -1.12 9.70 -39.59 -0.38 -1.50 16 4 C -0.10 -0.96 9.05 -39.58 -0.36 -1.32 16 5 C -0.08 -0.86 4.72 -104.62 -0.49 -1.35 16 6 C -0.05 -0.55 0.90 -155.87 -0.14 -0.69 16 7 C -0.13 -0.98 7.09 37.16 0.26 -0.72 16 8 C -0.15 -1.31 6.16 -26.94 -0.17 -1.47 16 9 C 0.53 6.69 8.08 -11.09 -0.09 6.60 16 10 O -0.47 -7.33 17.48 5.60 0.10 -7.23 16 11 N -0.57 -8.07 2.45 -115.33 -0.28 -8.35 16 12 C 0.10 1.61 5.01 -4.04 -0.02 1.59 16 13 C 0.00 0.04 2.42 -93.40 -0.23 -0.19 16 14 H 0.11 2.00 8.14 -51.93 -0.42 1.58 16 15 C 0.23 4.87 12.17 -20.80 -0.25 4.62 16 16 N -0.44 -10.27 18.48 42.11 0.78 -9.49 16 17 C 0.02 0.50 3.73 -27.89 -0.10 0.40 16 18 C -0.61 -16.54 8.60 -34.44 -0.30 -16.83 16 19 H 0.05 1.40 7.59 -52.48 -0.40 1.01 16 20 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 21 N -0.91 -26.85 13.65 55.43 0.76 -26.09 16 22 Si 1.07 25.33 29.90 -169.99 -5.08 20.24 16 23 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 C 0.53 7.58 5.28 -11.09 -0.06 7.52 16 27 O -0.45 -8.14 16.54 5.60 0.09 -8.05 16 28 C -0.10 -1.29 8.87 -39.58 -0.35 -1.65 16 29 C -0.11 -1.34 9.70 -39.58 -0.38 -1.72 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 32 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 33 H 0.12 0.85 8.06 -52.48 -0.42 0.42 16 34 H 0.13 0.88 6.06 -52.48 -0.32 0.56 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.62 7.79 -51.93 -0.40 0.22 16 37 H 0.08 0.37 7.40 -51.93 -0.38 -0.01 16 38 H 0.12 0.97 7.57 -51.93 -0.39 0.58 16 39 H 0.12 0.72 7.75 -51.93 -0.40 0.32 16 40 H 0.11 1.60 7.83 -51.93 -0.41 1.20 16 41 H 0.10 1.55 7.82 -51.93 -0.41 1.14 16 42 H 0.03 0.76 8.01 -51.93 -0.42 0.34 16 43 H 0.02 0.49 8.01 -51.93 -0.42 0.08 16 44 H 0.27 7.81 7.22 -40.82 -0.29 7.51 16 45 H 0.11 1.67 7.76 -52.49 -0.41 1.26 16 46 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 390.17 15.07 5.88 5.88 Total: -1.00 -34.89 390.17 -7.57 -42.46 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -6.40 Total: -1.19 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -3.41 Total: -8.18 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: 1.25 Total: -43.93 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: 0.19 Total: -15.28 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.08 Total: 20.24 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.89 -7.57 -42.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270448973.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.613 kcal (2) G-P(sol) polarization free energy of solvation -34.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds