Wall clock time and date at job start Tue Mar 31 2020 05:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35492 * 126.98180 * 2 1 4 4 N 1.30518 * 107.30683 * 179.84118 * 3 2 1 5 5 N 1.28593 * 109.67207 * 0.43807 * 4 3 2 6 6 C 1.30519 * 109.67507 * 359.71994 * 5 4 3 7 7 C 1.50694 * 126.34859 * 180.02562 * 6 5 4 8 8 C 1.53042 * 109.45881 * 60.03433 * 7 6 5 9 9 C 1.53191 * 109.31493 * 178.61438 * 8 7 6 10 10 N 1.46932 * 108.77536 * 54.63314 * 9 8 7 11 11 C 1.34772 * 120.62834 * 126.41616 * 10 9 8 12 12 O 1.21548 * 120.00336 * 354.23967 * 11 10 9 13 13 C 1.47892 * 119.99604 * 174.24096 * 11 10 9 14 14 C 1.39917 * 120.02653 * 324.61983 * 13 11 10 15 15 C 1.38328 * 120.35768 * 179.78817 * 14 13 11 16 16 C 1.37744 * 120.41302 * 0.46786 * 15 14 13 17 17 C 1.40751 * 120.04120 * 359.79243 * 16 15 14 18 18 C 1.41436 * 120.18353 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00053 * 25.31230 * 18 17 16 20 20 C 1.39942 * 120.00396 * 205.31560 * 18 17 16 21 21 N 1.30828 * 119.99451 * 16.86472 * 20 18 17 22 22 Si 1.86793 * 119.99963 * 196.86290 * 20 18 17 23 23 H 1.48504 * 109.47088 * 60.00457 * 22 20 18 24 24 H 1.48504 * 109.46829 * 179.97438 * 22 20 18 25 25 H 1.48492 * 109.47314 * 300.00081 * 22 20 18 26 26 C 1.38991 * 120.02342 * 144.89828 * 13 11 10 27 27 C 1.46928 * 118.73710 * 306.39207 * 10 9 8 28 28 C 1.53037 * 109.46399 * 299.96343 * 7 6 5 29 29 H 1.09000 * 109.47072 * 269.68893 * 1 2 3 30 30 H 1.08994 * 109.47412 * 149.68207 * 1 2 3 31 31 H 1.09000 * 109.46876 * 29.68275 * 1 2 3 32 32 H 1.08008 * 126.34317 * 359.97438 * 3 2 1 33 33 H 1.09006 * 109.46382 * 179.97438 * 7 6 5 34 34 H 1.09002 * 109.49449 * 298.56146 * 8 7 6 35 35 H 1.08997 * 109.49951 * 58.66001 * 8 7 6 36 36 H 1.09001 * 109.58428 * 294.84921 * 9 8 7 37 37 H 1.09002 * 109.58957 * 174.42160 * 9 8 7 38 38 H 1.08003 * 119.82117 * 0.02562 * 14 13 11 39 39 H 1.08004 * 119.79264 * 180.23841 * 15 14 13 40 40 H 1.08001 * 119.98443 * 179.76323 * 16 15 14 41 41 H 0.97003 * 119.99701 * 180.02562 * 21 20 18 42 42 H 1.08003 * 120.19954 * 359.97438 * 26 13 11 43 43 H 1.09001 * 109.58626 * 293.82303 * 27 10 9 44 44 H 1.08997 * 109.58375 * 173.39625 * 27 10 9 45 45 H 1.08997 * 109.50061 * 301.33939 * 28 7 6 46 46 H 1.09005 * 109.49557 * 61.39722 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2801 1.0824 0.0000 4 7 3.5091 0.6429 0.0035 5 7 3.5091 -0.6430 -0.0037 6 6 2.2801 -1.0824 -0.0060 7 6 1.8477 -2.5259 -0.0134 8 6 2.3917 -3.2275 1.2332 9 6 1.9215 -4.6855 1.2400 10 7 2.3158 -5.3154 -0.0275 11 6 3.0251 -6.4614 -0.0333 12 8 3.4346 -6.9279 1.0117 13 6 3.3053 -7.1511 -1.3112 14 6 2.3523 -7.1415 -2.3356 15 6 2.6089 -7.7807 -3.5352 16 6 3.8011 -8.4420 -3.7318 17 6 4.7697 -8.4671 -2.7109 18 6 5.9947 -9.1456 -2.9094 19 1 6.3774 -9.2879 -3.9093 20 6 6.7109 -9.6328 -1.8103 21 7 6.1201 -9.7631 -0.6503 22 14 8.5104 -10.0968 -1.9994 23 1 9.2855 -8.9069 -2.4338 24 1 9.0361 -10.5812 -0.6977 25 1 8.6404 -11.1707 -3.0168 26 6 4.5131 -7.8142 -1.4933 27 6 1.9215 -4.6726 -1.2886 28 6 2.3917 -3.2148 -1.2669 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3634 -0.8870 -0.5187 31 1 -0.3633 0.8928 -0.5089 32 1 1.9702 2.1170 -0.0004 33 1 0.7589 -2.5790 -0.0132 34 1 3.4813 -3.1968 1.2215 35 1 2.0225 -2.7220 2.1255 36 1 0.8369 -4.7191 1.3428 37 1 2.3861 -5.2155 2.0715 38 1 1.4127 -6.6291 -2.1903 39 1 1.8683 -7.7643 -4.3211 40 1 3.9927 -8.9420 -4.6698 41 1 6.6167 -10.1005 0.1117 42 1 5.2500 -7.8276 -0.7038 43 1 0.8369 -4.7052 -1.3918 44 1 2.3862 -5.1941 -2.1253 45 1 2.0226 -2.7003 -2.1541 46 1 3.4813 -3.1836 -1.2553 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332445901.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:29 Heat of formation + Delta-G solvation = 70.587059 kcal Electronic energy + Delta-G solvation = -29207.184676 eV Core-core repulsion = 25291.051878 eV Total energy + Delta-G solvation = -3916.132798 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.33832 -39.91417 -37.61921 -36.77159 -35.32506 -33.93598 -33.35183 -31.44544 -30.18221 -29.65896 -29.41233 -28.01630 -25.72958 -25.41892 -23.37235 -22.88210 -22.39858 -21.25372 -20.89914 -20.08937 -18.72318 -17.63811 -17.39376 -16.58226 -16.02669 -15.73324 -15.45489 -15.11154 -14.94868 -14.84669 -14.66602 -14.08104 -13.86767 -13.83369 -13.43873 -13.40134 -13.13670 -12.82435 -12.60536 -12.39541 -12.14473 -11.81495 -11.67499 -11.52251 -11.27082 -11.13462 -11.09276 -10.82190 -10.78679 -10.70547 -10.46146 -10.44240 -10.36051 -10.05814 -9.69295 -9.34436 -9.21283 -8.91259 -8.32538 -7.59393 -7.48496 -6.77360 -4.40613 1.57273 2.17494 2.30400 2.73530 2.81909 3.09094 3.10681 3.17118 3.38695 3.72171 3.93201 4.00493 4.14507 4.28984 4.48246 4.54615 4.60370 4.70269 4.80357 4.93099 5.07675 5.18334 5.27129 5.31900 5.48045 5.53433 5.56283 5.67647 5.72025 5.74636 5.90421 6.03244 6.03411 6.11061 6.14720 6.30401 6.34500 6.58166 6.69942 6.89155 6.99480 7.05451 7.21832 7.38940 7.66491 7.77738 7.88302 8.00030 8.17477 8.50478 8.58028 8.80920 8.83573 8.89142 10.16634 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015984 B = 0.002683 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.308401 B =10435.235234 C =10818.732696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.480 5.480 3 C 0.140 3.860 4 N -0.297 5.297 5 N -0.286 5.286 6 C 0.187 3.813 7 C 0.003 3.997 8 C -0.121 4.121 9 C 0.115 3.885 10 N -0.617 5.617 11 C 0.569 3.431 12 O -0.540 6.540 13 C -0.121 4.121 14 C -0.227 4.227 15 C -0.097 4.097 16 C -0.214 4.214 17 C 0.102 3.898 18 C -0.460 4.460 19 H 0.081 0.919 20 C 0.073 3.927 21 N -0.781 5.781 22 Si 0.910 3.090 23 H -0.263 1.263 24 H -0.277 1.277 25 H -0.265 1.265 26 C -0.097 4.097 27 C 0.097 3.903 28 C -0.124 4.124 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.217 0.783 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.285 0.715 42 H 0.129 0.871 43 H 0.061 0.939 44 H 0.123 0.877 45 H 0.072 0.928 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.241 17.499 1.261 22.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.171 5.171 3 C -0.147 4.147 4 N -0.136 5.136 5 N -0.125 5.125 6 C -0.080 4.080 7 C -0.018 4.018 8 C -0.160 4.160 9 C -0.008 4.008 10 N -0.351 5.351 11 C 0.361 3.639 12 O -0.417 6.417 13 C -0.125 4.125 14 C -0.247 4.247 15 C -0.115 4.115 16 C -0.234 4.234 17 C 0.100 3.900 18 C -0.489 4.489 19 H 0.099 0.901 20 C -0.147 4.147 21 N -0.405 5.405 22 Si 0.734 3.266 23 H -0.187 1.187 24 H -0.202 1.202 25 H -0.190 1.190 26 C -0.117 4.117 27 C -0.026 4.026 28 C -0.164 4.164 29 H 0.101 0.899 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.233 0.767 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.097 0.903 42 H 0.146 0.854 43 H 0.079 0.921 44 H 0.141 0.859 45 H 0.091 0.909 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.471 17.170 2.101 21.325 hybrid contribution -0.918 0.115 -0.008 0.925 sum -13.389 17.285 2.093 21.964 Atomic orbital electron populations 1.22120 0.75510 1.05331 1.04242 1.46255 1.09139 1.06837 1.54867 1.26419 0.87410 0.94838 1.06015 1.74292 1.18034 1.03520 1.17724 1.74308 1.17001 1.02819 1.18371 1.24995 0.87298 0.92108 1.03629 1.19685 1.00082 0.83846 0.98221 1.21932 1.03105 0.95232 0.95742 1.21459 0.99063 0.91998 0.88304 1.47978 1.56301 1.24663 1.06193 1.18983 0.75702 0.79244 0.90011 1.90708 1.51116 1.65802 1.34110 1.19405 0.97792 1.02770 0.92488 1.20490 0.99439 1.09947 0.94781 1.20440 0.96643 0.98394 0.96016 1.21090 0.94791 1.06955 1.00519 1.17571 0.92131 0.89526 0.90786 1.19564 1.03738 1.31451 0.94135 0.90127 1.25975 1.00368 0.93705 0.94640 1.69795 1.37563 1.31578 1.01600 0.86334 0.81985 0.79755 0.78521 1.18702 1.20223 1.18964 1.21531 0.95540 0.95661 0.99015 1.22289 0.99575 0.92018 0.88685 1.22011 1.03213 0.95610 0.95525 0.89894 0.88922 0.88919 0.76703 0.89691 0.89869 0.91135 0.92050 0.88582 0.88326 0.88920 0.88683 0.90345 0.85367 0.92055 0.85907 0.90912 0.89791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.23 10.91 59.85 0.65 0.88 16 2 N -0.48 -3.98 3.15 -122.69 -0.39 -4.37 16 3 C 0.14 1.29 12.74 -89.95 -1.15 0.15 16 4 N -0.30 -4.19 12.21 29.69 0.36 -3.83 16 5 N -0.29 -4.35 12.21 32.79 0.40 -3.95 16 6 C 0.19 2.16 6.54 -154.99 -1.01 1.15 16 7 C 0.00 0.03 2.50 -91.73 -0.23 -0.20 16 8 C -0.12 -1.42 5.34 -26.61 -0.14 -1.56 16 9 C 0.11 1.53 6.44 -3.71 -0.02 1.51 16 10 N -0.62 -10.08 2.97 -173.86 -0.52 -10.60 16 11 C 0.57 12.37 7.38 -12.31 -0.09 12.28 16 12 O -0.54 -13.60 16.23 5.32 0.09 -13.51 16 13 C -0.12 -2.82 5.29 -105.04 -0.56 -3.37 16 14 C -0.23 -4.61 7.36 -38.92 -0.29 -4.90 16 15 C -0.10 -2.00 10.01 -39.73 -0.40 -2.40 16 16 C -0.21 -4.99 9.78 -38.81 -0.38 -5.37 16 17 C 0.10 2.68 5.57 -106.87 -0.59 2.09 16 18 C -0.46 -12.05 9.05 -37.73 -0.34 -12.39 16 19 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 20 C 0.07 1.84 5.15 -17.34 -0.09 1.75 16 21 N -0.78 -20.88 10.95 55.55 0.61 -20.27 16 22 Si 0.91 18.90 29.59 -169.99 -5.03 13.87 16 23 H -0.26 -5.42 7.11 56.52 0.40 -5.01 16 24 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 25 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 26 C -0.10 -2.57 8.24 -38.44 -0.32 -2.89 16 27 C 0.10 1.29 4.77 -3.71 -0.02 1.27 16 28 C -0.12 -1.48 5.34 -26.61 -0.14 -1.62 16 29 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.09 0.23 7.18 -51.93 -0.37 -0.14 16 31 H 0.09 0.10 8.14 -51.93 -0.42 -0.33 16 32 H 0.22 0.95 8.06 -52.48 -0.42 0.52 16 33 H 0.08 0.63 6.89 -51.93 -0.36 0.27 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.10 1.48 7.00 -51.93 -0.36 1.11 16 38 H 0.10 1.69 6.02 -52.48 -0.32 1.37 16 39 H 0.09 1.61 8.06 -52.48 -0.42 1.19 16 40 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 41 H 0.29 7.05 8.30 -40.82 -0.34 6.71 16 42 H 0.13 3.68 6.12 -52.48 -0.32 3.36 16 43 H 0.06 0.66 8.05 -51.93 -0.42 0.24 16 44 H 0.12 1.89 4.45 -51.93 -0.23 1.66 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 374.13 15.07 5.64 5.64 Total: -1.00 -34.38 374.13 -10.11 -44.49 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -6.16 Total: 6.16 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -5.11 Total: -13.62 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 0.47 Total: -43.02 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.09 Total: -13.51 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.38 -10.11 -44.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332445901.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.074 kcal (2) G-P(sol) polarization free energy of solvation -34.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds