Wall clock time and date at job start Tue Mar 31 2020 06:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34774 * 119.99773 * 2 1 4 4 O 1.21689 * 119.99900 * 179.97438 * 3 2 1 5 5 C 1.46375 * 120.00210 * 0.02562 * 3 2 1 6 6 H 1.08006 * 119.99578 * 359.97438 * 5 3 2 7 7 C 1.40040 * 120.00322 * 179.97438 * 5 3 2 8 8 N 1.30676 * 119.99970 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00281 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46886 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47086 * 120.00076 * 9 7 5 12 12 H 1.48500 * 109.47176 * 240.00220 * 9 7 5 13 13 C 1.46497 * 119.99801 * 180.02562 * 2 1 3 14 14 H 1.09006 * 110.01462 * 184.98200 * 13 2 1 15 15 C 1.53874 * 110.03513 * 306.37204 * 13 2 1 16 16 C 1.54268 * 106.59640 * 119.33886 * 15 13 2 17 17 C 1.54888 * 104.31405 * 336.32370 * 16 15 13 18 18 C 1.54265 * 110.07458 * 63.56836 * 13 2 1 19 19 H 1.09003 * 110.48488 * 145.49077 * 18 13 2 20 20 C 1.50694 * 110.48742 * 22.97945 * 18 13 2 21 21 C 1.38235 * 119.99989 * 258.13525 * 20 18 13 22 22 C 1.38235 * 120.00156 * 179.76713 * 21 20 18 23 23 C 1.38239 * 119.99743 * 0.48099 * 22 21 20 24 24 C 1.50701 * 119.99775 * 179.76731 * 23 22 21 25 25 F 1.39900 * 109.47548 * 270.02403 * 24 23 22 26 26 F 1.39900 * 109.47219 * 30.02514 * 24 23 22 27 27 F 1.39901 * 109.46902 * 150.02120 * 24 23 22 28 28 C 1.38235 * 120.00172 * 359.79664 * 23 22 21 29 29 C 1.38236 * 120.00080 * 78.40774 * 20 18 13 30 30 H 1.08996 * 109.46898 * 275.45553 * 1 2 3 31 31 H 1.08992 * 109.47344 * 35.46254 * 1 2 3 32 32 H 1.09002 * 109.46919 * 155.46377 * 1 2 3 33 33 H 0.96999 * 119.99817 * 179.97438 * 8 7 5 34 34 H 1.08994 * 110.03019 * 0.05469 * 15 13 2 35 35 H 1.09003 * 110.03186 * 238.62175 * 15 13 2 36 36 H 1.08996 * 110.48770 * 95.07148 * 16 15 13 37 37 H 1.09005 * 110.48368 * 217.58293 * 16 15 13 38 38 H 1.08999 * 110.75952 * 156.32788 * 17 16 15 39 39 H 1.09002 * 110.75925 * 279.69889 * 17 16 15 40 40 H 1.08004 * 119.99889 * 359.97438 * 21 20 18 41 41 H 1.08004 * 120.00204 * 180.25081 * 22 21 20 42 42 H 1.07999 * 119.99816 * 179.97438 * 28 23 22 43 43 H 1.07994 * 120.00247 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3558 1.1672 0.0005 5 6 1.4070 2.4348 0.0006 6 1 0.3269 2.4348 0.0006 7 6 2.1071 3.6477 0.0011 8 7 3.4139 3.6477 0.0016 9 14 1.1731 5.2654 0.0011 10 1 -0.2869 4.9940 0.0011 11 1 1.5314 6.0438 1.2139 12 1 1.5323 6.0444 -1.2111 13 6 2.1975 -1.2687 -0.0006 14 1 3.2677 -1.0817 0.0885 15 6 1.7186 -2.1544 1.1630 16 6 1.1505 -3.4422 0.5317 17 6 0.7598 -3.0231 -0.9073 18 6 1.9037 -2.0492 -1.2984 19 1 2.7861 -2.6033 -1.6183 20 6 1.4483 -1.1111 -2.3863 21 6 0.1055 -1.0170 -2.7005 22 6 -0.3128 -0.1530 -3.6952 23 6 0.6130 0.6096 -4.3825 24 6 0.1576 1.5477 -5.4705 25 9 0.1513 0.8727 -6.6959 26 9 -1.1333 2.0039 -5.1828 27 9 1.0319 2.6374 -5.5428 28 6 1.9565 0.5113 -4.0723 29 6 2.3741 -0.3489 -3.0740 30 1 -0.3633 0.0977 1.0230 31 1 -0.3633 0.8370 -0.5962 32 1 -0.3633 -0.9349 -0.4268 33 1 3.8988 4.4878 0.0016 34 1 0.9406 -1.6407 1.7276 35 1 2.5564 -2.3972 1.8168 36 1 1.9105 -4.2232 0.5085 37 1 0.2727 -3.7816 1.0817 38 1 0.7420 -3.8882 -1.5703 39 1 -0.2024 -2.5111 -0.9128 40 1 -0.6173 -1.6161 -2.1665 41 1 -1.3624 -0.0765 -3.9379 42 1 2.6797 1.1068 -4.6096 43 1 3.4237 -0.4254 -2.8313 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368411637.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:44 Heat of formation + Delta-G solvation = -155.864256 kcal Electronic energy + Delta-G solvation = -31657.759698 eV Core-core repulsion = 27059.939081 eV Total energy + Delta-G solvation = -4597.820617 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.93623 -47.44180 -47.41209 -40.18832 -38.04653 -36.36409 -33.00961 -32.40496 -32.29403 -30.94710 -28.38375 -28.22276 -26.09330 -25.29356 -24.57186 -22.81435 -21.75889 -20.42969 -20.04333 -18.33737 -18.27521 -18.23079 -18.08797 -16.69415 -16.16971 -15.61926 -15.17093 -14.84525 -14.65899 -14.40781 -14.17811 -14.10284 -13.91049 -13.85878 -13.74989 -13.65997 -13.56226 -13.44775 -13.18073 -12.48590 -12.39072 -12.28828 -11.85939 -11.65041 -11.47353 -11.27335 -11.20835 -11.07252 -10.94877 -10.82366 -10.81457 -10.58624 -10.34431 -10.21686 -10.13586 -10.07603 -8.84450 -8.66905 -8.54468 -7.55493 -7.17520 -6.17993 -4.61533 1.29107 1.64149 2.91249 3.13516 3.22691 3.26066 3.80297 3.98513 4.09880 4.27726 4.51448 4.55520 4.67072 4.70856 4.81519 5.03616 5.12487 5.16633 5.31700 5.53257 5.60456 5.64879 5.72069 5.84218 5.85196 5.87008 5.89742 5.99748 6.05618 6.07511 6.15132 6.23237 6.33887 6.39732 6.46504 6.54372 6.59427 6.65734 6.69312 6.88302 7.12339 7.46350 7.65647 8.17330 8.39468 9.05398 9.44676 10.59192 10.78503 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.007810 B = 0.006723 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3584.137546 B = 4163.920262 C = 6739.867533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.633 5.633 3 C 0.562 3.438 4 O -0.579 6.579 5 C -0.538 4.538 6 H 0.069 0.931 7 C 0.090 3.910 8 N -0.766 5.766 9 Si 0.898 3.102 10 H -0.264 1.264 11 H -0.277 1.277 12 H -0.276 1.276 13 C 0.155 3.845 14 H 0.096 0.904 15 C -0.135 4.135 16 C -0.121 4.121 17 C -0.126 4.126 18 C -0.075 4.075 19 H 0.087 0.913 20 C -0.008 4.008 21 C -0.126 4.126 22 C -0.072 4.072 23 C -0.193 4.193 24 C 0.509 3.491 25 F -0.184 7.184 26 F -0.180 7.180 27 F -0.177 7.177 28 C -0.059 4.059 29 C -0.098 4.098 30 H 0.027 0.973 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.266 0.734 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.133 0.867 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.340 -11.363 -6.293 14.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.370 5.370 3 C 0.368 3.632 4 O -0.462 6.462 5 C -0.575 4.575 6 H 0.087 0.913 7 C -0.130 4.130 8 N -0.395 5.395 9 Si 0.723 3.277 10 H -0.187 1.187 11 H -0.202 1.202 12 H -0.201 1.201 13 C 0.049 3.951 14 H 0.114 0.886 15 C -0.174 4.174 16 C -0.159 4.159 17 C -0.163 4.163 18 C -0.094 4.094 19 H 0.105 0.895 20 C -0.009 4.009 21 C -0.144 4.144 22 C -0.091 4.091 23 C -0.195 4.195 24 C 0.455 3.545 25 F -0.166 7.166 26 F -0.161 7.161 27 F -0.158 7.158 28 C -0.077 4.077 29 C -0.116 4.116 30 H 0.045 0.955 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.150 0.850 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.504 -11.196 -6.311 14.404 hybrid contribution -0.646 1.225 -0.100 1.388 sum -7.150 -9.971 -6.411 13.843 Atomic orbital electron populations 1.21566 0.82779 1.00782 0.99496 1.47896 1.04718 1.04686 1.79726 1.18160 0.86869 0.82166 0.76022 1.90578 1.14032 1.86178 1.55385 1.20994 0.93596 0.89287 1.53597 0.91303 1.25677 0.94549 1.00115 0.92619 1.70022 1.06933 1.26980 1.35578 0.86457 0.80737 0.82271 0.78246 1.18741 1.20201 1.20102 1.21197 0.98794 0.84659 0.90421 0.88624 1.22570 1.00948 0.95445 0.98389 1.22314 1.00265 0.97588 0.95740 1.22880 0.98630 0.98312 0.96464 1.21631 0.98478 0.94962 0.94364 0.89498 1.19720 0.93136 0.94715 0.93289 1.21068 0.95671 0.99869 0.97777 1.20734 0.98633 0.94657 0.95032 1.19773 0.96202 1.02768 1.00718 1.18395 0.74840 0.79745 0.81536 1.93185 1.96294 1.80152 1.46929 1.93166 1.39670 1.89910 1.93403 1.93199 1.69295 1.56767 1.96546 1.20798 0.93706 0.96516 0.96730 1.20913 1.00315 0.95590 0.94765 0.95480 0.91785 0.93054 0.92313 0.91081 0.91851 0.91858 0.91975 0.91669 0.90426 0.84951 0.85485 0.85407 0.85328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.74 7.05 59.85 0.42 2.16 16 2 N -0.63 -13.18 1.82 -174.32 -0.32 -13.50 16 3 C 0.56 15.09 7.61 -12.99 -0.10 15.00 16 4 O -0.58 -17.69 14.37 5.20 0.07 -17.62 16 5 C -0.54 -14.83 8.73 -35.63 -0.31 -15.14 16 6 H 0.07 1.79 6.12 -52.48 -0.32 1.47 16 7 C 0.09 2.49 5.50 -17.37 -0.10 2.40 16 8 N -0.77 -22.62 11.83 55.55 0.66 -21.97 16 9 Si 0.90 20.44 29.56 -169.99 -5.02 15.41 16 10 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 C 0.16 2.73 3.20 -66.81 -0.21 2.51 16 14 H 0.10 1.98 6.96 -51.93 -0.36 1.62 16 15 C -0.13 -1.94 6.26 -25.61 -0.16 -2.10 16 16 C -0.12 -1.34 6.82 -25.07 -0.17 -1.51 16 17 C -0.13 -1.41 5.40 -24.55 -0.13 -1.54 16 18 C -0.07 -1.06 2.92 -89.93 -0.26 -1.32 16 19 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 20 C -0.01 -0.13 3.75 -104.63 -0.39 -0.52 16 21 C -0.13 -1.77 6.93 -39.58 -0.27 -2.05 16 22 C -0.07 -1.05 9.40 -39.58 -0.37 -1.42 16 23 C -0.19 -3.11 5.45 -104.62 -0.57 -3.68 16 24 C 0.51 7.90 3.36 36.01 0.12 8.03 16 25 F -0.18 -2.68 17.30 2.25 0.04 -2.64 16 26 F -0.18 -2.78 16.46 2.25 0.04 -2.74 16 27 F -0.18 -2.98 16.46 2.25 0.04 -2.94 16 28 C -0.06 -1.01 9.40 -39.58 -0.37 -1.38 16 29 C -0.10 -1.70 9.73 -39.58 -0.39 -2.09 16 30 H 0.03 0.47 7.99 -51.93 -0.41 0.05 16 31 H 0.06 1.24 6.42 -51.93 -0.33 0.90 16 32 H 0.05 0.74 3.24 -51.93 -0.17 0.57 16 33 H 0.27 7.20 8.29 -40.82 -0.34 6.86 16 34 H 0.07 1.08 7.04 -51.93 -0.37 0.72 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.86 3.94 -51.93 -0.20 0.65 16 40 H 0.13 1.54 5.00 -52.48 -0.26 1.28 16 41 H 0.13 1.55 7.61 -52.48 -0.40 1.15 16 42 H 0.13 2.07 7.60 -52.49 -0.40 1.67 16 43 H 0.13 2.29 8.06 -52.49 -0.42 1.86 16 LS Contribution 349.60 15.07 5.27 5.27 Total: -1.00 -32.39 349.60 -7.40 -39.79 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -4.90 Total: 3.60 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -3.27 Total: -2.66 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.34 Total: -35.47 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: 0.07 Total: -17.62 kcal Atomic # 9 Polarization: -8.44 SS G_CDS: 0.11 Total: -8.32 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.39 -7.40 -39.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368411637.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.079 kcal (2) G-P(sol) polarization free energy of solvation -32.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds