Wall clock time and date at job start Tue Mar 31 2020 06:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34772 * 119.99847 * 2 1 4 4 O 1.21691 * 120.00215 * 180.02562 * 3 2 1 5 5 C 1.46379 * 119.99963 * 0.02562 * 3 2 1 6 6 H 1.07999 * 120.00072 * 359.97438 * 5 3 2 7 7 C 1.40050 * 119.99868 * 179.97438 * 5 3 2 8 8 N 1.30673 * 120.00030 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99834 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47385 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46875 * 119.99920 * 9 7 5 12 12 H 1.48498 * 109.47405 * 239.99886 * 9 7 5 13 13 C 1.46495 * 119.99911 * 180.02562 * 2 1 3 14 14 H 1.09005 * 110.01294 * 179.06399 * 13 2 1 15 15 C 1.53874 * 110.07455 * 57.64816 * 13 2 1 16 16 C 1.54263 * 106.59758 * 240.68859 * 15 13 2 17 17 C 1.54891 * 104.19760 * 23.61243 * 16 15 13 18 18 C 1.54266 * 110.03701 * 300.45401 * 13 2 1 19 19 H 1.09000 * 110.60177 * 214.46239 * 18 13 2 20 20 C 1.50704 * 110.48320 * 337.04668 * 18 13 2 21 21 C 1.38236 * 120.00080 * 307.91972 * 20 18 13 22 22 C 1.38232 * 119.99920 * 179.75956 * 21 20 18 23 23 C 1.38235 * 120.00216 * 0.49492 * 22 21 20 24 24 C 1.50697 * 120.00410 * 179.76414 * 23 22 21 25 25 F 1.39903 * 109.46954 * 270.01706 * 24 23 22 26 26 F 1.39898 * 109.47121 * 30.01952 * 24 23 22 27 27 F 1.39903 * 109.47289 * 150.02159 * 24 23 22 28 28 C 1.38243 * 119.99678 * 359.77869 * 23 22 21 29 29 C 1.38233 * 120.00013 * 359.96512 * 28 23 22 30 30 H 1.08998 * 109.47084 * 274.32572 * 1 2 3 31 31 H 1.08996 * 109.47508 * 34.33202 * 1 2 3 32 32 H 1.09004 * 109.46726 * 154.33504 * 1 2 3 33 33 H 0.97004 * 119.99764 * 180.02562 * 8 7 5 34 34 H 1.09004 * 110.03506 * 121.40944 * 15 13 2 35 35 H 1.08997 * 110.03432 * 359.97438 * 15 13 2 36 36 H 1.08999 * 110.48943 * 264.92838 * 16 15 13 37 37 H 1.09001 * 110.48885 * 142.29018 * 16 15 13 38 38 H 1.08993 * 110.75579 * 80.36439 * 17 16 15 39 39 H 1.08997 * 110.75645 * 203.74595 * 17 16 15 40 40 H 1.07999 * 119.99927 * 359.97438 * 21 20 18 41 41 H 1.08001 * 120.00329 * 180.25203 * 22 21 20 42 42 H 1.07996 * 120.00151 * 179.97438 * 28 23 22 43 43 H 1.07999 * 119.99947 * 180.02562 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3558 1.1673 -0.0005 5 6 1.4069 2.4348 0.0006 6 1 0.3269 2.4348 0.0006 7 6 2.1072 3.6477 0.0011 8 7 3.4139 3.6477 0.0016 9 14 1.1731 5.2654 0.0011 10 1 -0.2869 4.9940 0.0011 11 1 1.5314 6.0438 1.2140 12 1 1.5323 6.0444 -1.2110 13 6 2.1975 -1.2687 -0.0006 14 1 3.2709 -1.0797 -0.0172 15 6 1.7918 -2.1122 -1.2219 16 6 1.1875 -3.4209 -0.6724 17 6 0.7115 -3.0500 0.7541 18 6 1.8256 -2.0943 1.2484 19 1 2.6858 -2.6621 1.6029 20 6 1.3034 -1.1947 2.3389 21 6 2.0355 -0.0908 2.7341 22 6 1.5541 0.7371 3.7309 23 6 0.3454 0.4554 4.3397 24 6 -0.1769 1.3550 5.4300 25 9 0.2868 0.9024 6.6700 26 9 0.2733 2.6615 5.2123 27 9 -1.5758 1.3361 5.4201 28 6 -0.3841 -0.6517 3.9483 29 6 0.0948 -1.4767 2.9479 30 1 -0.3633 0.0775 1.0247 31 1 -0.3634 0.8486 -0.5796 32 1 -0.3633 -0.9263 -0.4451 33 1 3.8989 4.4878 0.0024 34 1 2.6683 -2.3328 -1.8312 35 1 1.0492 -1.5781 -1.8146 36 1 1.9456 -4.2030 -0.6303 37 1 0.3441 -3.7386 -1.2855 38 1 -0.2498 -2.5374 0.7194 39 1 0.6552 -3.9368 1.3853 40 1 2.9820 0.1268 2.2616 41 1 2.1242 1.6019 4.0369 42 1 -1.3282 -0.8721 4.4242 43 1 -0.4753 -2.3414 2.6419 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368411640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:54 Heat of formation + Delta-G solvation = -161.456373 kcal Electronic energy + Delta-G solvation = -31661.842160 eV Core-core repulsion = 27063.779051 eV Total energy + Delta-G solvation = -4598.063110 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.94101 -47.45799 -47.40542 -40.19731 -38.01924 -36.42364 -33.06145 -32.42976 -32.29990 -30.81493 -28.35408 -28.22678 -26.07207 -25.29657 -24.59572 -22.73703 -21.74669 -20.43800 -20.00839 -18.34638 -18.27051 -18.19082 -18.06078 -16.71823 -16.09239 -15.64580 -15.07064 -14.82281 -14.60877 -14.51549 -14.18584 -14.10039 -13.96332 -13.87027 -13.79882 -13.65522 -13.56792 -13.44373 -13.12211 -12.56559 -12.38632 -12.19883 -11.83502 -11.55185 -11.50763 -11.31223 -11.27673 -11.06209 -10.92248 -10.87921 -10.72934 -10.58299 -10.38703 -10.24167 -10.12608 -10.09065 -8.87268 -8.68459 -8.52045 -7.59817 -7.19974 -6.21232 -4.64784 1.28636 1.66659 2.91095 3.11971 3.21663 3.25001 3.82953 3.98440 4.07953 4.28112 4.50078 4.51564 4.66954 4.70486 4.80037 5.09225 5.14595 5.19016 5.37113 5.59208 5.66083 5.69681 5.71584 5.82371 5.84923 5.90879 5.92055 6.02122 6.04837 6.07368 6.15077 6.27753 6.37330 6.40924 6.47627 6.58810 6.60605 6.66063 6.72686 6.93660 7.17496 7.43906 7.62950 8.14922 8.37029 9.02511 9.40935 10.55317 10.74352 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.007768 B = 0.006719 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3603.518245 B = 4166.589341 C = 6892.028771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.633 5.633 3 C 0.562 3.438 4 O -0.581 6.581 5 C -0.537 4.537 6 H 0.069 0.931 7 C 0.090 3.910 8 N -0.766 5.766 9 Si 0.898 3.102 10 H -0.264 1.264 11 H -0.275 1.275 12 H -0.277 1.277 13 C 0.152 3.848 14 H 0.096 0.904 15 C -0.134 4.134 16 C -0.122 4.122 17 C -0.121 4.121 18 C -0.074 4.074 19 H 0.089 0.911 20 C -0.017 4.017 21 C -0.084 4.084 22 C -0.058 4.058 23 C -0.195 4.195 24 C 0.508 3.492 25 F -0.184 7.184 26 F -0.176 7.176 27 F -0.182 7.182 28 C -0.079 4.079 29 C -0.131 4.131 30 H 0.035 0.965 31 H 0.062 0.938 32 H 0.044 0.956 33 H 0.267 0.733 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.139 0.861 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.430 -11.293 5.762 14.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.370 5.370 3 C 0.368 3.632 4 O -0.464 6.464 5 C -0.574 4.574 6 H 0.087 0.913 7 C -0.129 4.129 8 N -0.395 5.395 9 Si 0.723 3.277 10 H -0.187 1.187 11 H -0.201 1.201 12 H -0.202 1.202 13 C 0.046 3.954 14 H 0.114 0.886 15 C -0.173 4.173 16 C -0.160 4.160 17 C -0.158 4.158 18 C -0.093 4.093 19 H 0.107 0.893 20 C -0.017 4.017 21 C -0.102 4.102 22 C -0.076 4.076 23 C -0.197 4.197 24 C 0.454 3.546 25 F -0.165 7.165 26 F -0.157 7.157 27 F -0.164 7.164 28 C -0.098 4.098 29 C -0.149 4.149 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.157 0.843 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.602 -11.128 5.779 14.171 hybrid contribution -0.747 1.158 0.150 1.387 sum -7.349 -9.970 5.930 13.732 Atomic orbital electron populations 1.21439 0.82593 1.00358 1.00100 1.47918 1.04828 1.04692 1.79569 1.18151 0.86857 0.82164 0.76017 1.90589 1.13990 1.86207 1.55620 1.21005 0.93644 0.89240 1.53526 0.91255 1.25676 0.94544 1.00119 0.92601 1.70019 1.06921 1.27056 1.35461 0.86455 0.80758 0.82235 0.78263 1.18745 1.20082 1.20213 1.21216 0.98748 0.84637 0.90804 0.88569 1.22578 1.00862 0.95468 0.98415 1.22325 0.99975 0.97574 0.96086 1.22695 0.98633 0.98352 0.96132 1.21520 0.98317 0.95393 0.94113 0.89260 1.19817 0.93473 0.94579 0.93872 1.21167 1.01261 0.93039 0.94733 1.20875 0.93546 0.98568 0.94590 1.19816 0.99633 0.99304 1.00904 1.18412 0.75127 0.79377 0.81644 1.93189 1.88617 1.89014 1.45684 1.93209 1.88900 1.38906 1.94669 1.93155 1.30042 1.96488 1.96676 1.20702 0.98771 0.93246 0.97034 1.20951 0.96468 1.00326 0.97145 0.94666 0.91906 0.93747 0.92262 0.91856 0.91114 0.91873 0.92010 0.90716 0.91802 0.84301 0.85259 0.85636 0.85343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.77 7.99 59.85 0.48 2.25 16 2 N -0.63 -12.95 1.51 -174.31 -0.26 -13.21 16 3 C 0.56 14.66 5.92 -12.99 -0.08 14.59 16 4 O -0.58 -17.25 13.79 5.20 0.07 -17.18 16 5 C -0.54 -14.48 8.73 -35.63 -0.31 -14.79 16 6 H 0.07 1.77 6.09 -52.49 -0.32 1.45 16 7 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 8 N -0.77 -22.12 11.83 55.55 0.66 -21.47 16 9 Si 0.90 20.12 29.56 -169.99 -5.02 15.09 16 10 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 11 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 12 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 13 C 0.15 2.63 2.80 -66.82 -0.19 2.45 16 14 H 0.10 1.95 6.94 -51.93 -0.36 1.59 16 15 C -0.13 -1.94 5.97 -25.61 -0.15 -2.09 16 16 C -0.12 -1.35 6.83 -25.07 -0.17 -1.52 16 17 C -0.12 -1.36 4.50 -24.74 -0.11 -1.47 16 18 C -0.07 -1.04 3.03 -90.11 -0.27 -1.31 16 19 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 20 C -0.02 -0.27 3.26 -104.62 -0.34 -0.61 16 21 C -0.08 -1.54 7.47 -39.58 -0.30 -1.84 16 22 C -0.06 -1.02 9.40 -39.58 -0.37 -1.40 16 23 C -0.20 -3.11 5.45 -104.62 -0.57 -3.68 16 24 C 0.51 7.83 3.36 36.00 0.12 7.95 16 25 F -0.18 -2.72 17.30 2.25 0.04 -2.68 16 26 F -0.18 -2.97 16.46 2.25 0.04 -2.93 16 27 F -0.18 -2.69 16.46 2.25 0.04 -2.65 16 28 C -0.08 -1.10 9.40 -39.58 -0.37 -1.48 16 29 C -0.13 -1.76 7.81 -39.58 -0.31 -2.07 16 30 H 0.03 0.63 6.08 -51.93 -0.32 0.31 16 31 H 0.06 1.20 6.35 -51.93 -0.33 0.87 16 32 H 0.04 0.66 5.35 -51.93 -0.28 0.38 16 33 H 0.27 7.07 8.29 -40.82 -0.34 6.73 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 1.09 6.93 -51.93 -0.36 0.73 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.86 5.36 -51.93 -0.28 0.58 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.14 2.97 6.73 -52.49 -0.35 2.61 16 41 H 0.13 2.34 7.60 -52.49 -0.40 1.94 16 42 H 0.13 1.46 7.60 -52.49 -0.40 1.06 16 43 H 0.13 1.40 6.26 -52.49 -0.33 1.07 16 LS Contribution 345.97 15.07 5.21 5.21 Total: -1.00 -30.86 345.97 -7.24 -38.10 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -4.97 Total: 4.38 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -3.04 Total: -2.66 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: 0.39 Total: -34.68 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: 0.07 Total: -17.18 kcal Atomic # 9 Polarization: -8.38 SS G_CDS: 0.11 Total: -8.27 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.86 -7.24 -38.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368411640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.353 kcal (2) G-P(sol) polarization free energy of solvation -30.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds