Wall clock time and date at job start Tue Mar 31 2020 05:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86800 * 120.00366 * 2 1 4 4 H 1.48502 * 109.46987 * 270.00309 * 3 2 1 5 5 H 1.48496 * 109.47174 * 150.00049 * 3 2 1 6 6 H 1.48502 * 109.46846 * 30.00273 * 3 2 1 7 7 C 1.40053 * 119.99593 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00325 * 343.66587 * 7 2 1 9 9 C 1.46381 * 119.99724 * 163.67017 * 7 2 1 10 10 O 1.21682 * 119.99698 * 351.51117 * 9 7 2 11 11 N 1.34775 * 119.99605 * 171.51199 * 9 7 2 12 12 C 1.47016 * 125.65282 * 359.69001 * 11 9 7 13 13 C 1.54329 * 107.26738 * 178.85200 * 12 11 9 14 14 C 1.55155 * 103.02170 * 338.13795 * 13 12 11 15 15 H 1.08999 * 111.00736 * 277.23384 * 14 13 12 16 16 O 1.42903 * 111.03765 * 153.39246 * 14 13 12 17 17 C 1.35910 * 116.99682 * 164.03006 * 16 14 13 18 18 C 1.38763 * 120.46534 * 185.00301 * 17 16 14 19 19 N 1.31816 * 120.70141 * 180.02562 * 18 17 16 20 20 C 1.31867 * 121.79059 * 359.97438 * 19 18 17 21 21 C 1.38304 * 120.87512 * 0.02562 * 20 19 18 22 22 Br 1.89098 * 120.39976 * 179.97438 * 21 20 19 23 23 C 1.38666 * 119.20511 * 359.69930 * 21 20 19 24 24 C 1.47430 * 125.64471 * 179.97438 * 11 9 7 25 25 H 0.97002 * 120.00352 * 185.16975 * 1 2 3 26 26 H 1.09004 * 109.88195 * 298.39668 * 12 11 9 27 27 H 1.09003 * 109.88068 * 59.55665 * 12 11 9 28 28 H 1.09007 * 110.85171 * 219.67433 * 13 12 11 29 29 H 1.09001 * 110.67049 * 96.52556 * 13 12 11 30 30 H 1.07995 * 119.64789 * 0.02562 * 18 17 16 31 31 H 1.08001 * 119.55938 * 179.97438 * 20 19 18 32 32 H 1.07999 * 120.82084 * 180.27575 * 23 21 20 33 33 H 1.09005 * 110.36403 * 322.93202 * 24 11 9 34 34 H 1.09004 * 110.36470 * 85.14198 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 3.5383 1.4400 0.7000 6 1 1.4383 2.6526 0.7001 7 6 2.0069 -1.2129 -0.0005 8 1 1.4996 -2.1295 0.2621 9 6 3.4264 -1.2384 -0.3570 10 8 3.9603 -0.2389 -0.8005 11 7 4.1419 -2.3688 -0.1940 12 6 3.6268 -3.6402 0.3350 13 6 4.7921 -4.6518 0.3116 14 6 5.7533 -4.0533 -0.7492 15 1 5.4440 -4.3301 -1.7571 16 8 7.1028 -4.4533 -0.5025 17 6 7.9907 -4.2882 -1.5181 18 6 9.2946 -4.7466 -1.3942 19 7 10.1598 -4.5885 -2.3760 20 6 9.8276 -3.9951 -3.5058 21 6 8.5470 -3.5118 -3.7038 22 35 8.0854 -2.6624 -5.3290 23 6 7.6039 -3.6625 -2.6984 24 6 5.5722 -2.5336 -0.5111 25 1 -0.4851 -0.8366 0.0757 26 1 3.2748 -3.5009 1.3572 27 1 2.8127 -4.0006 -0.2938 28 1 4.4439 -5.6378 0.0037 29 1 5.2771 -4.7027 1.2864 30 1 9.6038 -5.2382 -0.4836 31 1 10.5656 -3.8844 -4.2865 32 1 6.5951 -3.2989 -2.8270 33 1 5.8279 -1.9752 -1.4116 34 1 6.1869 -2.2034 0.3264 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408522312.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:54 Heat of formation + Delta-G solvation = -40.576244 kcal Electronic energy + Delta-G solvation = -21027.170379 eV Core-core repulsion = 17585.397703 eV Total energy + Delta-G solvation = -3441.772676 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.05497 -39.32365 -37.90074 -35.86240 -33.43059 -32.99210 -31.46355 -30.39164 -29.64713 -28.74898 -26.19379 -24.15115 -23.50710 -22.57939 -21.02775 -19.44450 -18.58569 -17.79244 -17.11528 -17.02610 -16.11382 -15.48411 -15.24714 -14.45985 -14.37388 -14.14734 -13.96752 -13.66429 -13.49032 -13.12788 -12.74339 -12.51739 -12.31163 -11.95313 -11.83322 -11.59879 -11.50376 -11.01267 -10.77460 -10.66951 -10.66262 -10.10325 -9.99302 -9.65500 -9.37603 -8.96961 -8.72818 -8.11575 -7.73163 -7.11308 -5.00661 0.52882 0.84319 1.20454 2.69064 3.31284 3.50002 3.57117 3.89214 4.11959 4.17467 4.19627 4.31353 4.38391 4.46277 4.48681 4.60076 4.66130 4.81839 4.98769 5.27537 5.36109 5.40448 5.46400 5.63047 5.72022 5.82048 5.92905 6.06775 6.11486 6.24917 6.82320 6.94678 7.49355 7.55869 7.67582 8.05324 8.73763 8.89040 9.93277 10.22586 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.014066 B = 0.003613 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.171280 B = 7747.385798 C = 9122.191691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.066 3.934 3 Si 1.118 2.882 4 H -0.285 1.285 5 H -0.280 1.280 6 H -0.316 1.316 7 C -0.595 4.595 8 H 0.073 0.927 9 C 0.567 3.433 10 O -0.613 6.613 11 N -0.635 5.635 12 C 0.122 3.878 13 C -0.120 4.120 14 C 0.063 3.937 15 H 0.088 0.912 16 O -0.289 6.289 17 C 0.095 3.905 18 C 0.086 3.914 19 N -0.438 5.438 20 C 0.086 3.914 21 C -0.103 4.103 22 Br -0.027 7.027 23 C -0.138 4.138 24 C 0.092 3.908 25 H 0.279 0.721 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.172 0.828 31 H 0.166 0.834 32 H 0.154 0.846 33 H 0.072 0.928 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.201 -12.217 -6.386 21.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.153 4.153 3 Si 0.948 3.052 4 H -0.212 1.212 5 H -0.206 1.206 6 H -0.246 1.246 7 C -0.631 4.631 8 H 0.091 0.909 9 C 0.378 3.622 10 O -0.505 6.505 11 N -0.373 5.373 12 C -0.002 4.002 13 C -0.158 4.158 14 C 0.006 3.994 15 H 0.106 0.894 16 O -0.200 6.200 17 C 0.046 3.954 18 C -0.074 4.074 19 N -0.147 5.147 20 C -0.073 4.073 21 C -0.185 4.185 22 Br 0.057 6.943 23 C -0.166 4.166 24 C -0.033 4.033 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.189 0.811 31 H 0.184 0.816 32 H 0.171 0.829 33 H 0.091 0.909 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 16.855 -10.165 -6.990 20.887 hybrid contribution -0.894 -1.753 0.134 1.973 sum 15.961 -11.918 -6.855 21.067 Atomic orbital electron populations 1.70627 1.07670 1.32333 1.34612 1.27068 0.95197 1.04756 0.88256 0.82658 0.73306 0.71277 0.77924 1.21176 1.20613 1.24633 1.21978 0.92642 0.97343 1.51116 0.90855 1.18198 0.86926 0.79227 0.77814 1.90247 1.73014 1.33037 1.54212 1.48173 1.07754 1.12149 1.69267 1.21649 0.95024 0.83631 0.99866 1.22729 0.94831 0.99102 0.99147 1.23830 0.78838 0.96140 1.00591 0.89409 1.86146 1.19028 1.79132 1.35698 1.20166 0.91821 0.95643 0.87762 1.22393 0.86870 0.99211 0.98883 1.67868 1.34173 1.12583 1.00097 1.22698 0.93313 0.95571 0.95700 1.22840 0.97249 1.03595 0.94794 1.96810 1.93419 1.78144 1.25878 1.21897 1.01346 1.00713 0.92657 1.22345 0.86461 0.93062 1.01390 0.90962 0.91459 0.91969 0.89589 0.89421 0.81139 0.81638 0.82868 0.90942 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.30 13.64 55.55 0.76 -22.54 16 2 C 0.07 1.87 5.51 -17.37 -0.10 1.77 16 3 Si 1.12 29.04 26.32 -169.99 -4.47 24.57 16 4 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 5 H -0.28 -7.47 6.68 56.52 0.38 -7.09 16 6 H -0.32 -7.79 7.11 56.52 0.40 -7.38 16 7 C -0.60 -16.40 9.40 -35.63 -0.33 -16.73 16 8 H 0.07 1.97 7.37 -52.49 -0.39 1.58 16 9 C 0.57 15.00 7.50 -12.99 -0.10 14.90 16 10 O -0.61 -17.72 12.75 5.21 0.07 -17.65 16 11 N -0.64 -13.36 3.33 -172.18 -0.57 -13.93 16 12 C 0.12 2.01 6.09 -3.06 -0.02 1.99 16 13 C -0.12 -1.47 6.68 -24.89 -0.17 -1.63 16 14 C 0.06 0.84 2.84 -24.59 -0.07 0.77 16 15 H 0.09 1.10 6.73 -51.93 -0.35 0.75 16 16 O -0.29 -3.60 9.97 -19.46 -0.19 -3.80 16 17 C 0.10 1.14 6.64 -39.07 -0.26 0.88 16 18 C 0.09 0.93 11.14 -17.36 -0.19 0.73 16 19 N -0.44 -4.99 10.35 -13.10 -0.14 -5.13 16 20 C 0.09 0.91 10.94 -17.51 -0.19 0.72 16 21 C -0.10 -1.18 6.24 -39.40 -0.25 -1.42 16 22 Br -0.03 -0.30 33.73 -68.01 -2.29 -2.59 16 23 C -0.14 -1.70 8.53 -39.11 -0.33 -2.03 16 24 C 0.09 1.61 6.22 -2.54 -0.02 1.59 16 25 H 0.28 7.54 8.72 -40.82 -0.36 7.19 16 26 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.06 1.02 8.10 -51.93 -0.42 0.60 16 28 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.17 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.15 1.96 5.41 -52.49 -0.28 1.68 16 33 H 0.07 1.34 7.04 -51.93 -0.37 0.98 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 310.79 15.07 4.68 4.68 Total: -1.00 -31.60 310.79 -7.70 -39.30 By element: Atomic # 1 Polarization: -0.95 SS G_CDS: -3.52 Total: -4.47 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -2.02 Total: 1.55 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 0.05 Total: -41.60 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.13 Total: -21.44 kcal Atomic # 14 Polarization: 29.04 SS G_CDS: -4.47 Total: 24.57 kcal Atomic # 35 Polarization: -0.30 SS G_CDS: -2.29 Total: -2.59 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.60 -7.70 -39.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408522312.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.272 kcal (2) G-P(sol) polarization free energy of solvation -31.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds