Wall clock time and date at job start Tue Mar 31 2020 05:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00040 * 2 1 4 4 C 1.50695 * 109.47565 * 124.72126 * 3 2 1 5 5 C 1.36550 * 119.93737 * 264.72603 * 4 3 2 6 6 C 1.40284 * 119.87635 * 179.72941 * 5 4 3 7 7 C 1.46386 * 120.12756 * 180.29313 * 6 5 4 8 8 C 1.37853 * 119.99551 * 46.76256 * 7 6 5 9 9 C 1.43196 * 119.99757 * 190.31809 * 8 7 6 10 10 N 8.11115 * 88.00571 * 62.74561 * 2 1 3 11 11 C 1.47119 * 120.00221 * 10.31657 * 8 7 6 12 12 O 1.21654 * 119.99773 * 7.19483 * 11 8 7 13 13 N 1.34773 * 120.00151 * 187.19916 * 11 8 7 14 14 C 1.46502 * 119.99962 * 179.97438 * 13 11 8 15 15 C 1.53007 * 109.47001 * 85.00217 * 14 13 11 16 16 C 1.52998 * 109.46980 * 204.99643 * 14 13 11 17 17 C 1.40320 * 119.75608 * 0.56301 * 6 5 4 18 18 C 1.36525 * 119.87229 * 359.70728 * 17 6 5 19 19 C 1.39255 * 119.93933 * 84.99419 * 4 3 2 20 20 O 1.35504 * 119.87684 * 0.02562 * 19 4 3 21 21 C 1.34746 * 117.00165 * 174.23196 * 20 19 4 22 22 H 1.08005 * 119.99610 * 5.07183 * 21 20 19 23 23 C 1.38774 * 120.00177 * 185.06197 * 21 20 19 24 24 N 1.31466 * 119.99852 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00064 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47002 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.46912 * 120.00140 * 25 23 21 28 28 H 1.48497 * 109.47204 * 240.00495 * 25 23 21 29 29 H 1.08001 * 120.00009 * 0.28634 * 1 2 3 30 30 H 1.08003 * 120.00232 * 180.27434 * 1 2 3 31 31 H 1.08001 * 120.00009 * 179.71366 * 2 1 3 32 32 H 1.09007 * 109.46926 * 244.72275 * 3 2 1 33 33 H 1.08996 * 109.46970 * 4.71553 * 3 2 1 34 34 H 1.08003 * 120.06355 * 359.97438 * 5 4 3 35 35 H 1.07990 * 120.00214 * 226.77046 * 7 6 5 36 36 H 0.96998 * 120.00263 * 359.97438 * 13 11 8 37 37 H 1.08993 * 109.47316 * 325.00261 * 14 13 11 38 38 H 1.08993 * 109.47511 * 59.99613 * 15 14 13 39 39 H 1.08995 * 109.46978 * 179.97438 * 15 14 13 40 40 H 1.09001 * 109.46761 * 299.99396 * 15 14 13 41 41 H 1.09001 * 109.47045 * 60.00194 * 16 14 13 42 42 H 1.09003 * 109.47213 * 180.02562 * 16 14 13 43 43 H 1.09006 * 109.47286 * 299.99873 * 16 14 13 44 44 H 1.08003 * 120.06941 * 179.73291 * 17 6 5 45 45 H 1.07998 * 119.93856 * 179.97438 * 18 17 6 46 46 H 0.96998 * 119.99855 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0155 1.3356 1.1677 5 6 2.6407 1.9327 2.3371 6 6 3.5258 1.9554 3.4253 7 6 3.1272 2.5884 4.6836 8 6 1.8904 2.3187 5.2293 9 6 1.4094 3.0958 6.3316 10 7 1.0277 3.7122 7.2063 11 6 1.0647 1.2325 4.6791 12 8 1.5232 0.4890 3.8324 13 7 -0.1997 1.0611 5.1131 14 6 -1.0221 -0.0202 4.5649 15 6 -0.7396 -1.3144 5.3307 16 6 -2.5017 0.3429 4.7055 17 6 4.7969 1.3740 3.3013 18 6 5.1632 0.7845 2.1256 19 6 4.2779 0.7596 1.0504 20 8 4.6469 0.1736 -0.1143 21 6 5.9199 -0.2587 -0.2052 22 1 6.5709 -0.2057 0.6550 23 6 6.3944 -0.7722 -1.4039 24 7 5.6020 -0.8365 -2.4510 25 14 8.1590 -1.3722 -1.5297 26 1 8.8372 -1.1931 -0.2208 27 1 8.1676 -2.8107 -1.8985 28 1 8.8747 -0.5903 -2.5696 29 1 -0.5400 0.9353 -0.0047 30 1 -0.5401 -0.9353 0.0045 31 1 1.8500 -0.9353 0.0047 32 1 2.6252 1.4003 -0.9293 33 1 1.3582 2.1318 0.0845 34 1 1.6631 2.3833 2.4255 35 1 3.8020 3.2668 5.1842 36 1 -0.5652 1.6537 5.7885 37 1 -0.7812 -0.1616 3.5113 38 1 -0.9805 -1.1731 6.3843 39 1 -1.3518 -2.1188 4.9231 40 1 0.3145 -1.5731 5.2305 41 1 -2.7030 1.2648 4.1600 42 1 -3.1137 -0.4619 4.2980 43 1 -2.7427 0.4841 5.7592 44 1 5.4839 1.3923 4.1344 45 1 6.1414 0.3370 2.0289 46 1 5.9338 -1.1951 -3.2890 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408769334.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:02 Heat of formation + Delta-G solvation = 26.194552 kcal Electronic energy + Delta-G solvation = -29280.319137 eV Core-core repulsion = 25329.968584 eV Total energy + Delta-G solvation = -3950.350552 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.06132 -39.19974 -37.07443 -36.60697 -35.82317 -34.66305 -33.06072 -32.38601 -31.44555 -30.65592 -28.57793 -27.33066 -25.83228 -25.74767 -24.02263 -22.14239 -21.44678 -20.70166 -20.08091 -18.99573 -18.63979 -18.10006 -16.95211 -16.15876 -15.43622 -15.29291 -14.94146 -14.65610 -14.51533 -14.27222 -14.15717 -13.95017 -13.68105 -13.56407 -13.42130 -13.12838 -12.88395 -12.80010 -12.68940 -12.64280 -12.43217 -12.32332 -12.18481 -11.85401 -11.53794 -11.44855 -11.34594 -11.10786 -11.03295 -10.97464 -10.64897 -10.55693 -10.49284 -9.64797 -9.51750 -9.31779 -9.01685 -8.86362 -8.68580 -7.98622 -7.02202 -6.63913 -4.16105 0.60240 2.26026 2.38973 2.61317 2.83468 2.95125 3.04686 3.05697 3.11131 3.23819 3.73028 3.83514 4.00304 4.48696 4.70988 4.90586 4.95741 4.97713 5.11421 5.15771 5.22706 5.44511 5.51229 5.56038 5.58698 5.66061 5.67123 5.79446 5.81276 5.86962 5.91200 5.98209 6.08269 6.12006 6.19265 6.37211 6.49272 6.53632 6.57124 6.62639 6.87281 6.98169 7.18602 7.23161 7.25226 7.27783 7.46785 7.48070 7.57548 7.75566 7.82551 8.42676 8.81489 9.50182 10.52393 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013234 B = 0.003305 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.207208 B = 8468.982481 C = 9643.110982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.105 4.105 3 C -0.038 4.038 4 C -0.161 4.161 5 C 0.025 3.975 6 C -0.208 4.208 7 C 0.119 3.881 8 C -0.196 4.196 9 C 0.264 3.736 10 N -0.443 5.443 11 C 0.567 3.433 12 O -0.495 6.495 13 N -0.732 5.732 14 C 0.139 3.861 15 C -0.163 4.163 16 C -0.160 4.160 17 C -0.024 4.024 18 C -0.249 4.249 19 C 0.182 3.818 20 O -0.154 6.154 21 C -0.390 4.390 22 H 0.097 0.903 23 C 0.043 3.957 24 N -0.848 5.848 25 Si 0.942 3.058 26 H -0.265 1.265 27 H -0.274 1.274 28 H -0.274 1.274 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.106 0.894 35 H 0.132 0.868 36 H 0.392 0.608 37 H 0.094 0.906 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.071 0.929 43 H 0.056 0.944 44 H 0.110 0.890 45 H 0.129 0.871 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.065 2.971 10.556 14.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.123 4.123 3 C -0.075 4.075 4 C -0.163 4.163 5 C 0.006 3.994 6 C -0.210 4.210 7 C 0.095 3.905 8 C -0.203 4.203 9 C -0.050 4.050 10 N -0.120 5.120 11 C 0.354 3.646 12 O -0.370 6.370 13 N -0.384 5.384 14 C 0.034 3.966 15 C -0.221 4.221 16 C -0.218 4.218 17 C -0.043 4.043 18 C -0.268 4.268 19 C 0.125 3.875 20 O -0.055 6.055 21 C -0.466 4.466 22 H 0.115 0.885 23 C -0.164 4.164 24 N -0.481 5.481 25 Si 0.766 3.234 26 H -0.189 1.189 27 H -0.200 1.200 28 H -0.200 1.200 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.125 0.875 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.124 0.876 35 H 0.150 0.850 36 H 0.226 0.774 37 H 0.112 0.888 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.075 0.925 44 H 0.128 0.872 45 H 0.147 0.853 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.452 3.189 10.762 14.674 hybrid contribution 0.842 -0.381 0.217 0.950 sum -8.609 2.808 10.979 14.232 Atomic orbital electron populations 1.23525 0.95765 1.00598 1.06316 1.22915 0.95384 0.98918 0.95044 1.19435 0.96090 0.94641 0.97287 1.18365 0.94149 1.06892 0.96860 1.20186 0.95180 0.93459 0.90578 1.18063 0.96701 1.12986 0.93213 1.22963 0.90479 0.87350 0.89706 1.18039 1.00306 1.02965 0.99013 1.25742 0.93689 0.92973 0.92558 1.81245 1.08614 1.10625 1.11554 1.17636 0.81093 0.84056 0.81824 1.91010 1.70632 1.45083 1.30256 1.46075 1.13635 1.34252 1.44483 1.20903 0.89669 0.86442 0.99548 1.22182 1.02918 0.97082 0.99957 1.22074 0.95070 1.02483 1.02140 1.20529 0.93233 0.94421 0.96121 1.20718 1.01929 1.10129 0.94064 1.19456 0.92403 0.89179 0.86511 1.83866 1.30122 1.61762 1.29708 1.21543 0.85344 1.41063 0.98644 0.88526 1.25365 1.00268 0.96600 0.94137 1.70000 1.35856 1.40664 1.01557 0.85623 0.80023 0.78662 0.79061 1.18872 1.19991 1.19972 0.89502 0.89377 0.87493 0.89725 0.92135 0.87581 0.85034 0.77443 0.88768 0.92944 0.91831 0.91729 0.92004 0.90980 0.92452 0.87193 0.85326 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.52 14.32 29.01 0.42 -3.10 16 2 C -0.10 -1.93 9.50 -36.03 -0.34 -2.27 16 3 C -0.04 -0.70 5.50 -29.04 -0.16 -0.86 16 4 C -0.16 -3.20 5.09 -104.86 -0.53 -3.74 16 5 C 0.02 0.43 6.28 -39.42 -0.25 0.18 16 6 C -0.21 -3.32 4.47 -105.07 -0.47 -3.79 16 7 C 0.12 1.48 9.51 -36.45 -0.35 1.13 16 8 C -0.20 -2.46 5.76 -104.51 -0.60 -3.06 16 9 C 0.26 3.27 14.21 -22.47 -0.32 2.95 16 10 N -0.44 -6.10 18.54 41.84 0.78 -5.33 16 11 C 0.57 7.86 6.87 -12.66 -0.09 7.77 16 12 O -0.50 -8.53 12.10 5.23 0.06 -8.46 16 13 N -0.73 -8.30 5.03 -54.97 -0.28 -8.57 16 14 C 0.14 1.46 3.18 -67.93 -0.22 1.24 16 15 C -0.16 -1.68 9.48 37.16 0.35 -1.32 16 16 C -0.16 -1.26 9.38 37.16 0.35 -0.91 16 17 C -0.02 -0.41 9.75 -39.42 -0.38 -0.79 16 18 C -0.25 -5.00 9.10 -39.81 -0.36 -5.37 16 19 C 0.18 4.06 6.64 -38.81 -0.26 3.80 16 20 O -0.15 -4.02 8.87 1.04 0.01 -4.01 16 21 C -0.39 -10.07 9.48 30.93 0.29 -9.78 16 22 H 0.10 2.31 5.18 -52.48 -0.27 2.04 16 23 C 0.04 1.09 5.50 -17.51 -0.10 1.00 16 24 N -0.85 -23.15 13.67 55.49 0.76 -22.39 16 25 Si 0.94 19.22 29.55 -169.99 -5.02 14.19 16 26 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 27 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 28 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 29 H 0.09 1.22 7.84 -52.49 -0.41 0.81 16 30 H 0.09 1.26 8.06 -52.48 -0.42 0.83 16 31 H 0.11 2.21 8.06 -52.49 -0.42 1.78 16 32 H 0.08 1.75 7.69 -51.93 -0.40 1.36 16 33 H 0.06 0.98 7.69 -51.93 -0.40 0.58 16 34 H 0.11 1.71 7.31 -52.48 -0.38 1.32 16 35 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.39 3.92 7.51 -40.82 -0.31 3.61 16 37 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.11 1.50 8.06 -52.48 -0.42 1.07 16 45 H 0.13 2.58 5.62 -52.49 -0.29 2.28 16 46 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 398.90 15.07 6.01 6.01 Total: -1.00 -29.05 398.90 -6.92 -35.97 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -6.22 Total: 9.51 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -3.02 Total: -16.92 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 1.26 Total: -36.30 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.07 Total: -12.47 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.02 Total: 14.19 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -29.05 -6.92 -35.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408769334.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.164 kcal (2) G-P(sol) polarization free energy of solvation -29.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds