Wall clock time and date at job start Tue Mar 31 2020 05:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35913 * 117.00083 * 2 1 4 4 C 1.38867 * 119.97889 * 359.72624 * 3 2 1 5 5 C 1.38257 * 120.24054 * 179.72183 * 4 3 2 6 6 C 1.38001 * 120.20788 * 0.55190 * 5 4 3 7 7 C 1.39596 * 119.96447 * 359.72598 * 6 5 4 8 8 C 1.47791 * 120.12273 * 180.02562 * 7 6 5 9 9 O 1.21597 * 120.00130 * 179.97438 * 8 7 6 10 10 N 1.34775 * 120.00023 * 359.97438 * 8 7 6 11 11 N 1.40097 * 120.00192 * 179.97438 * 10 8 7 12 12 C 1.29864 * 120.00013 * 179.97438 * 11 10 8 13 13 C 1.47347 * 119.99818 * 179.97438 * 12 11 10 14 14 C 1.39817 * 120.08907 * 359.73169 * 13 12 11 15 15 C 1.37711 * 119.91008 * 179.76306 * 14 13 12 16 16 C 1.39081 * 120.08793 * 0.53249 * 15 14 13 17 17 O 1.35647 * 119.91172 * 179.71878 * 16 15 14 18 18 C 1.34812 * 117.00223 * 174.42870 * 17 16 15 19 19 H 1.08002 * 119.99332 * 5.05567 * 18 17 16 20 20 C 1.38639 * 120.00051 * 185.06001 * 18 17 16 21 21 N 1.31558 * 120.00319 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99780 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47224 * 89.99925 * 22 20 18 24 24 H 1.48499 * 109.47217 * 209.99351 * 22 20 18 25 25 H 1.48497 * 109.47342 * 330.00078 * 22 20 18 26 26 C 1.39080 * 120.17731 * 359.70083 * 16 15 14 27 27 C 1.37713 * 120.08920 * 0.03980 * 26 16 15 28 28 C 1.38439 * 119.98483 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.47324 * 60.00085 * 1 2 3 30 30 H 1.08996 * 109.47113 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47057 * 299.99900 * 1 2 3 32 32 H 1.07999 * 119.87971 * 359.97438 * 4 3 2 33 33 H 1.07995 * 119.89650 * 180.27828 * 5 4 3 34 34 H 1.07996 * 120.01922 * 179.74476 * 6 5 4 35 35 H 0.97006 * 120.00182 * 359.97438 * 10 8 7 36 36 H 1.07994 * 120.00278 * 0.02562 * 12 11 10 37 37 H 1.08005 * 120.04667 * 359.97438 * 14 13 12 38 38 H 1.08003 * 119.95660 * 180.24942 * 15 14 13 39 39 H 0.96998 * 120.00261 * 179.97438 * 21 20 18 40 40 H 1.07996 * 119.95652 * 180.02562 * 26 16 15 41 41 H 1.07992 * 120.04793 * 180.02562 * 27 26 16 42 42 H 1.07999 * 120.10383 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2893 2.3754 -0.0057 5 6 1.9113 3.6101 0.0000 6 6 3.2888 3.6936 0.0000 7 6 4.0580 2.5287 0.0000 8 6 5.5334 2.6141 0.0006 9 8 6.2012 1.5979 0.0011 10 7 6.1387 3.8182 0.0007 11 7 7.5373 3.8992 0.0018 12 6 8.1206 5.0595 0.0013 13 6 9.5916 5.1446 0.0031 14 6 10.3613 3.9774 0.0109 15 6 11.7358 4.0612 0.0075 16 6 12.3585 5.3048 0.0076 17 8 13.7127 5.3832 0.0101 18 6 14.2549 6.6120 -0.1066 19 1 13.6184 7.4845 -0.1143 20 6 15.6294 6.7556 -0.2168 21 7 16.4048 5.6928 -0.2070 22 14 16.3806 8.4582 -0.3792 23 1 16.6822 8.9971 0.9714 24 1 17.6350 8.3725 -1.1693 25 1 15.4218 9.3585 -1.0686 26 6 11.5965 6.4683 0.0048 27 6 10.2214 6.3930 0.0027 28 6 3.4285 1.2831 -0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2109 2.3162 -0.0106 33 1 1.3174 4.5120 0.0001 34 1 3.7715 4.6597 0.0004 35 1 5.6060 4.6289 -0.0001 36 1 7.5275 5.9620 0.0005 37 1 9.8785 3.0113 0.0160 38 1 12.3311 3.1601 0.0095 39 1 17.3664 5.7932 -0.2845 40 1 12.0837 7.4321 0.0044 41 1 9.6304 7.2968 0.0001 42 1 4.0181 0.3782 -0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408872904.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:55 Heat of formation + Delta-G solvation = 2.184977 kcal Electronic energy + Delta-G solvation = -26178.068032 eV Core-core repulsion = 22090.843251 eV Total energy + Delta-G solvation = -4087.224780 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.79263 -39.55839 -39.09641 -37.54614 -37.03400 -35.82910 -32.79779 -32.27291 -31.58731 -30.56606 -30.31789 -28.43478 -27.80728 -25.64857 -24.38646 -22.94132 -22.63078 -21.98182 -20.69836 -20.29100 -18.95374 -18.15283 -17.37247 -16.97748 -16.71590 -16.52903 -16.23767 -16.09931 -15.14216 -14.98721 -14.81721 -14.58170 -14.30371 -14.13154 -13.95880 -13.76869 -13.53532 -13.16722 -12.82900 -12.71691 -12.53061 -12.46804 -12.36321 -11.79197 -11.61594 -11.45587 -11.33397 -11.22170 -10.94653 -10.78907 -10.51932 -10.20557 -9.95119 -9.51483 -9.44038 -9.23322 -8.78035 -8.73519 -8.28903 -7.12257 -6.58388 -4.14845 0.35859 0.91833 1.40169 2.21256 2.35441 2.54941 2.85927 2.97217 3.07075 3.11431 3.13304 3.52786 3.86741 4.18882 4.24781 4.48524 4.56089 4.58478 4.62564 4.64689 4.85709 4.90544 4.98616 4.99364 5.00850 5.11320 5.19004 5.44302 5.56372 5.70043 5.75711 5.83381 5.85204 5.93404 6.10354 6.15027 6.34456 6.62322 6.80458 6.86652 6.95852 7.02576 7.18693 7.20258 7.32312 7.60413 7.70474 7.86541 8.42601 8.86239 9.54073 10.58446 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.043587 B = 0.001482 C = 0.001435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.241545 B =18892.668470 C =19510.967227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.314 6.314 3 C 0.122 3.878 4 C -0.185 4.185 5 C -0.085 4.085 6 C -0.126 4.126 7 C -0.087 4.087 8 C 0.574 3.426 9 O -0.499 6.499 10 N -0.581 5.581 11 N -0.266 5.266 12 C 0.152 3.848 13 C -0.175 4.175 14 C -0.024 4.024 15 C -0.201 4.201 16 C 0.170 3.830 17 O -0.165 6.165 18 C -0.393 4.393 19 H 0.097 0.903 20 C 0.041 3.959 21 N -0.853 5.853 22 Si 0.944 3.056 23 H -0.272 1.272 24 H -0.276 1.276 25 H -0.266 1.266 26 C -0.242 4.242 27 C -0.033 4.033 28 C -0.090 4.090 29 H 0.056 0.944 30 H 0.102 0.898 31 H 0.056 0.944 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.128 0.872 35 H 0.378 0.622 36 H 0.107 0.893 37 H 0.126 0.874 38 H 0.121 0.879 39 H 0.273 0.727 40 H 0.132 0.868 41 H 0.113 0.887 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.072 -1.118 0.243 31.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.227 6.227 3 C 0.076 3.924 4 C -0.204 4.204 5 C -0.103 4.103 6 C -0.145 4.145 7 C -0.091 4.091 8 C 0.360 3.640 9 O -0.372 6.372 10 N -0.322 5.322 11 N -0.072 5.072 12 C -0.055 4.055 13 C -0.179 4.179 14 C -0.045 4.045 15 C -0.220 4.220 16 C 0.113 3.887 17 O -0.066 6.066 18 C -0.469 4.469 19 H 0.114 0.886 20 C -0.165 4.165 21 N -0.487 5.487 22 Si 0.768 3.232 23 H -0.197 1.197 24 H -0.201 1.201 25 H -0.190 1.190 26 C -0.261 4.261 27 C -0.054 4.054 28 C -0.109 4.109 29 H 0.075 0.925 30 H 0.120 0.880 31 H 0.075 0.925 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.145 0.855 35 H 0.217 0.783 36 H 0.124 0.876 37 H 0.144 0.856 38 H 0.139 0.861 39 H 0.083 0.917 40 H 0.149 0.851 41 H 0.131 0.869 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -30.084 -3.294 0.244 30.265 hybrid contribution -0.559 2.444 -0.071 2.508 sum -30.643 -0.849 0.173 30.656 Atomic orbital electron populations 1.23105 0.78072 1.04311 1.01395 1.86122 1.21575 1.26394 1.88604 1.18850 0.91946 0.84549 0.97009 1.21461 1.00416 0.92305 1.06258 1.20875 0.94162 0.97334 0.97935 1.21231 0.94187 0.97361 1.01720 1.19595 0.92173 0.93718 1.03634 1.17830 0.86587 0.82555 0.76983 1.90815 1.65641 1.34252 1.46492 1.46762 1.03334 1.08376 1.73747 1.75173 0.89669 1.24398 1.17916 1.24465 0.95242 0.92658 0.93125 1.17776 0.88197 0.93988 1.17917 1.20924 0.92325 0.97621 0.93590 1.20205 0.93974 0.95742 1.12096 1.19600 0.84628 0.93461 0.91016 1.83946 1.14234 1.32378 1.76040 1.21433 0.91084 0.82252 1.52142 0.88609 1.25366 0.95132 0.99836 0.96140 1.70038 1.05239 1.29079 1.44302 0.85664 0.78861 0.79856 0.78799 1.19721 1.20122 1.19021 1.21036 0.93489 0.98924 1.12687 1.20774 0.93983 0.95355 0.95289 1.20473 0.91412 0.98286 1.00745 0.92498 0.87954 0.92489 0.84906 0.84892 0.85465 0.78348 0.87556 0.85606 0.86061 0.91695 0.85055 0.86888 0.83461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.71 10.49 -19.47 -0.20 -2.91 16 3 C 0.12 1.10 6.68 -39.27 -0.26 0.84 16 4 C -0.19 -1.24 9.03 -39.34 -0.36 -1.60 16 5 C -0.08 -0.53 10.03 -39.66 -0.40 -0.92 16 6 C -0.13 -0.96 9.54 -39.16 -0.37 -1.33 16 7 C -0.09 -0.94 5.87 -104.99 -0.62 -1.55 16 8 C 0.57 8.20 7.89 -12.35 -0.10 8.11 16 9 O -0.50 -9.29 16.68 5.28 0.09 -9.20 16 10 N -0.58 -7.52 6.21 30.52 0.19 -7.33 16 11 N -0.27 -4.26 10.15 32.14 0.33 -3.93 16 12 C 0.15 2.16 10.75 -14.68 -0.16 2.01 16 13 C -0.17 -2.97 5.87 -105.01 -0.62 -3.59 16 14 C -0.02 -0.46 9.57 -39.18 -0.37 -0.84 16 15 C -0.20 -4.24 9.97 -39.46 -0.39 -4.63 16 16 C 0.17 3.95 6.65 -38.96 -0.26 3.69 16 17 O -0.17 -4.55 9.75 0.42 0.00 -4.54 16 18 C -0.39 -10.49 9.48 30.88 0.29 -10.20 16 19 H 0.10 2.32 5.18 -52.49 -0.27 2.05 16 20 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 21 N -0.85 -24.19 13.67 55.48 0.76 -23.44 16 22 Si 0.94 19.58 29.55 -169.99 -5.02 14.56 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 26 C -0.24 -4.89 9.15 -39.46 -0.36 -5.25 16 27 C -0.03 -0.56 9.78 -39.18 -0.38 -0.94 16 28 C -0.09 -0.98 9.53 -39.01 -0.37 -1.35 16 29 H 0.06 0.17 7.64 -51.93 -0.40 -0.22 16 30 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.17 7.67 -51.93 -0.40 -0.23 16 32 H 0.13 0.54 6.28 -52.49 -0.33 0.21 16 33 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 34 H 0.13 0.66 6.40 -52.49 -0.34 0.32 16 35 H 0.38 3.33 6.68 -182.59 -1.22 2.11 16 36 H 0.11 1.08 8.02 -52.49 -0.42 0.66 16 37 H 0.13 2.33 7.55 -52.48 -0.40 1.93 16 38 H 0.12 2.49 8.06 -52.48 -0.42 2.07 16 39 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.13 2.61 5.62 -52.49 -0.29 2.31 16 41 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 42 H 0.15 1.75 7.65 -52.49 -0.40 1.35 16 LS Contribution 372.25 15.07 5.61 5.61 Total: -1.00 -34.27 372.25 -7.38 -41.65 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -5.29 Total: 5.01 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -3.83 Total: -15.47 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 1.27 Total: -34.70 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.11 Total: -16.65 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.27 -7.38 -41.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408872904.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.834 kcal (2) G-P(sol) polarization free energy of solvation -34.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds