Wall clock time and date at job start Tue Mar 31 2020 05:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38364 * 119.90695 * 2 1 4 4 C 1.38021 * 120.09141 * 180.25231 * 3 2 1 5 5 C 1.39153 * 119.90472 * 359.47524 * 4 3 2 6 6 S 1.76193 * 120.08916 * 180.22660 * 5 4 3 7 7 C 1.76188 * 100.00367 * 354.37670 * 6 5 4 8 8 C 1.39878 * 119.91373 * 274.47217 * 7 6 5 9 9 C 1.36251 * 120.08838 * 179.71499 * 8 7 6 10 10 C 1.40602 * 119.90701 * 0.58023 * 9 8 7 11 11 C 1.46362 * 120.08081 * 179.71370 * 10 9 8 12 12 N 1.30908 * 120.00059 * 359.97438 * 11 10 9 13 13 N 1.40102 * 119.99816 * 179.97438 * 12 11 10 14 14 C 1.34768 * 119.99980 * 180.02562 * 13 12 11 15 15 O 1.22075 * 120.00035 * 359.97438 * 14 13 12 16 16 C 1.39880 * 120.00207 * 180.02562 * 14 13 12 17 17 H 1.08003 * 119.99558 * 5.41438 * 16 14 13 18 18 C 1.40040 * 120.00166 * 185.41248 * 16 14 13 19 19 N 1.30694 * 120.00237 * 354.58182 * 18 16 14 20 20 Si 1.86800 * 119.99977 * 174.58285 * 18 16 14 21 21 H 1.48502 * 109.47453 * 94.99658 * 20 18 16 22 22 H 1.48504 * 109.47465 * 214.99861 * 20 18 16 23 23 H 1.48507 * 109.47354 * 334.99472 * 20 18 16 24 24 C 1.40593 * 119.83090 * 359.69992 * 10 9 8 25 25 C 1.36241 * 119.91075 * 359.97438 * 24 10 9 26 26 C 1.39151 * 119.81355 * 0.52372 * 5 4 3 27 27 C 1.38021 * 119.90546 * 359.72784 * 26 5 4 28 28 H 1.09002 * 109.46992 * 89.99831 * 1 2 3 29 29 H 1.08995 * 109.47366 * 210.00135 * 1 2 3 30 30 H 1.09004 * 109.47193 * 329.99975 * 1 2 3 31 31 H 1.08001 * 119.95146 * 359.97438 * 3 2 1 32 32 H 1.08002 * 120.04492 * 179.69688 * 4 3 2 33 33 H 1.07993 * 119.95594 * 359.97438 * 8 7 6 34 34 H 1.07995 * 120.04701 * 180.27518 * 9 8 7 35 35 H 1.08005 * 119.99357 * 179.97438 * 11 10 9 36 36 H 0.97008 * 119.99889 * 359.97438 * 13 12 11 37 37 H 0.97001 * 120.00317 * 179.97438 * 19 18 16 38 38 H 1.08004 * 120.04599 * 180.02562 * 24 10 9 39 39 H 1.08003 * 119.95736 * 180.02562 * 25 24 10 40 40 H 1.07994 * 120.05007 * 179.75166 * 26 5 4 41 41 H 1.07995 * 119.95573 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1994 0.0000 4 6 3.5771 1.2038 -0.0053 5 6 4.2748 -0.0002 0.0005 6 16 6.0367 -0.0001 -0.0002 7 6 6.3426 1.7258 -0.1789 8 6 6.3702 2.3010 -1.4536 9 6 6.6008 3.6363 -1.5956 10 6 6.8232 4.4341 -0.4594 11 6 7.0774 5.8678 -0.6079 12 7 7.0984 6.4088 -1.7998 13 7 7.3412 7.7812 -1.9419 14 6 7.3623 8.3383 -3.1689 15 8 7.1703 7.6470 -4.1565 16 6 7.6052 9.7085 -3.3108 17 1 7.8622 10.3037 -2.4470 18 6 7.5154 10.3086 -4.5730 19 7 7.3092 9.5727 -5.6332 20 14 7.6901 12.1607 -4.7412 21 1 9.0978 12.4971 -5.0734 22 1 6.7966 12.6460 -5.8235 23 1 7.3146 12.8118 -3.4603 24 6 6.8005 3.8511 0.8198 25 6 6.5627 2.5163 0.9539 26 6 3.5770 -1.2041 0.0005 27 6 2.1968 -1.1995 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.6546 2.1334 -0.0004 32 1 4.1148 2.1405 -0.0102 33 1 6.2045 1.6866 -2.3262 34 1 6.6175 4.0805 -2.5798 35 1 7.2477 6.4793 0.2659 36 1 7.4934 8.3307 -1.1570 37 1 7.2466 9.9883 -6.5074 38 1 6.9705 4.4607 1.6950 39 1 6.5447 2.0677 1.9362 40 1 4.1146 -2.1407 0.0009 41 1 1.6545 -2.1334 0.0000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409233503.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:04 Heat of formation + Delta-G solvation = 50.140296 kcal Electronic energy + Delta-G solvation = -24205.253312 eV Core-core repulsion = 20562.860901 eV Total energy + Delta-G solvation = -3642.392411 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.099 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.39598 -39.04809 -37.70481 -35.34300 -33.05540 -32.78591 -32.01915 -31.25535 -31.09963 -29.42134 -27.23783 -26.70925 -24.05052 -22.76486 -22.54657 -21.72881 -20.83465 -19.79677 -18.20544 -17.77549 -16.86363 -16.40297 -15.75696 -15.54346 -15.43566 -15.19055 -14.55782 -14.26090 -14.08492 -14.02110 -13.82289 -13.50888 -13.49734 -13.36330 -12.80866 -12.76812 -12.54487 -12.50924 -12.24030 -11.52595 -11.48108 -11.34805 -11.20639 -11.15068 -11.01433 -10.73413 -10.51299 -10.43957 -9.70473 -9.68035 -9.19063 -9.16448 -9.07632 -8.88688 -7.87243 -7.50376 -7.40872 -6.49781 -5.06230 0.54312 1.01489 1.21359 1.47402 1.64691 2.25571 2.73799 2.99443 3.05469 3.10059 3.49822 3.57047 3.88738 3.99885 4.34849 4.60359 4.68519 4.77904 4.80502 4.90306 5.01250 5.06274 5.20953 5.34439 5.35238 5.45198 5.46785 5.49373 5.65567 5.66466 5.77031 5.78799 5.84822 5.99625 6.13197 6.15361 6.21791 6.29233 6.40350 6.48304 6.70125 6.74642 6.86562 7.11851 7.73517 7.87542 8.49342 8.66635 9.16698 10.28755 10.52863 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.017039 B = 0.001946 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.919804 B =14387.636815 C =15258.994210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.094 4.094 3 C -0.103 4.103 4 C -0.115 4.115 5 C -0.102 4.102 6 S -0.014 6.014 7 C -0.157 4.157 8 C -0.061 4.061 9 C -0.106 4.106 10 C 0.023 3.977 11 C -0.003 4.003 12 N -0.171 5.171 13 N -0.582 5.582 14 C 0.554 3.446 15 O -0.553 6.553 16 C -0.533 4.533 17 H 0.072 0.928 18 C 0.087 3.913 19 N -0.740 5.740 20 Si 0.918 3.082 21 H -0.269 1.269 22 H -0.275 1.275 23 H -0.261 1.261 24 C -0.122 4.122 25 C -0.064 4.064 26 C -0.100 4.100 27 C -0.107 4.107 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.124 0.876 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.143 0.857 35 H 0.111 0.889 36 H 0.371 0.629 37 H 0.276 0.724 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.125 0.875 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.945 -17.117 14.664 23.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.097 4.097 3 C -0.123 4.123 4 C -0.138 4.138 5 C -0.214 4.214 6 S 0.236 5.764 7 C -0.270 4.270 8 C -0.082 4.082 9 C -0.128 4.128 10 C 0.020 3.980 11 C -0.210 4.210 12 N 0.017 4.983 13 N -0.328 5.328 14 C 0.364 3.636 15 O -0.433 6.433 16 C -0.570 4.570 17 H 0.090 0.910 18 C -0.137 4.137 19 N -0.367 5.367 20 Si 0.742 3.258 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.185 1.185 24 C -0.145 4.145 25 C -0.084 4.084 26 C -0.124 4.124 27 C -0.127 4.127 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.142 0.858 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.161 0.839 35 H 0.128 0.872 36 H 0.207 0.793 37 H 0.087 0.913 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.143 0.857 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.230 -18.505 12.762 23.613 hybrid contribution -0.530 2.683 1.080 2.940 sum -7.760 -15.822 13.842 22.409 Atomic orbital electron populations 1.20783 0.91171 1.02686 1.02354 1.19980 0.96102 0.93147 1.00471 1.20990 0.93738 0.97686 0.99855 1.21361 0.94661 0.97039 1.00753 1.22169 0.98009 0.96342 1.04878 1.84223 0.98233 1.02963 1.91001 1.22018 1.11637 0.97262 0.96092 1.21271 0.95832 0.95122 0.95956 1.21384 0.98646 0.92958 0.99767 1.18887 0.94872 0.91120 0.93116 1.23909 1.09015 0.94182 0.93883 1.74896 1.02576 0.98043 1.22782 1.48239 1.72437 1.00790 1.11328 1.16636 0.79253 0.88377 0.79352 1.90763 1.53712 1.63224 1.35564 1.19560 1.49480 0.92671 0.95284 0.90985 1.25766 0.92557 1.00424 0.94970 1.70056 1.30704 1.36850 0.99108 0.86178 0.78946 0.81637 0.79066 1.19418 1.19989 1.18538 1.20994 1.02281 0.94816 0.96399 1.21105 0.96435 0.93294 0.97612 1.20748 0.93983 0.96242 1.01416 1.20918 0.93559 0.97550 1.00681 0.91165 0.91631 0.91549 0.85845 0.85303 0.85189 0.83909 0.87198 0.79337 0.91344 0.85116 0.85181 0.85699 0.85811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.01 36.01 0.36 -0.42 16 2 C -0.09 -0.89 5.89 -104.53 -0.62 -1.51 16 3 C -0.10 -1.09 9.69 -39.61 -0.38 -1.48 16 4 C -0.11 -1.36 9.25 -39.32 -0.36 -1.72 16 5 C -0.10 -1.18 6.11 -38.90 -0.24 -1.41 16 6 S -0.01 -0.16 22.04 -107.50 -2.37 -2.53 16 7 C -0.16 -1.92 3.55 -38.35 -0.14 -2.06 16 8 C -0.06 -0.82 9.49 -39.68 -0.38 -1.19 16 9 C -0.11 -1.61 9.53 -39.41 -0.38 -1.99 16 10 C 0.02 0.33 5.89 -104.85 -0.62 -0.29 16 11 C 0.00 -0.04 10.74 -14.68 -0.16 -0.20 16 12 N -0.17 -3.70 10.19 32.08 0.33 -3.38 16 13 N -0.58 -13.48 6.26 28.76 0.18 -13.30 16 14 C 0.55 15.75 7.62 -15.65 -0.12 15.64 16 15 O -0.55 -18.12 15.19 4.85 0.07 -18.05 16 16 C -0.53 -14.41 9.21 -38.29 -0.35 -14.76 16 17 H 0.07 1.73 7.85 -52.48 -0.41 1.32 16 18 C 0.09 2.31 5.49 -17.36 -0.10 2.21 16 19 N -0.74 -21.27 11.71 55.55 0.65 -20.62 16 20 Si 0.92 18.91 29.56 -169.99 -5.03 13.89 16 21 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 23 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 24 C -0.12 -1.41 9.75 -39.41 -0.38 -1.80 16 25 C -0.06 -0.71 9.43 -39.69 -0.37 -1.09 16 26 C -0.10 -1.01 9.80 -39.32 -0.39 -1.40 16 27 C -0.11 -0.98 9.69 -39.61 -0.38 -1.37 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 30 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 31 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.13 1.60 5.75 -52.49 -0.30 1.30 16 33 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 34 H 0.14 2.49 7.54 -52.49 -0.40 2.09 16 35 H 0.11 1.47 8.04 -52.48 -0.42 1.05 16 36 H 0.37 7.14 8.61 -182.59 -1.57 5.57 16 37 H 0.28 7.07 8.29 -40.82 -0.34 6.73 16 38 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 39 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 40 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 41 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 376.15 15.07 5.67 5.67 Total: -1.00 -34.04 376.15 -11.53 -45.57 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -6.04 Total: 7.57 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -5.00 Total: -14.82 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 1.16 Total: -37.29 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: 0.07 Total: -18.05 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.89 kcal Atomic # 16 Polarization: -0.16 SS G_CDS: -2.37 Total: -2.53 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.04 -11.53 -45.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409233503.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.710 kcal (2) G-P(sol) polarization free energy of solvation -34.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds