Wall clock time and date at job start Tue Mar 31 2020 05:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31221 * 1 3 3 Si 1.86803 * 119.99985 * 2 1 4 4 H 1.48499 * 109.46946 * 240.00455 * 3 2 1 5 5 H 1.48501 * 109.47127 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47287 * 119.99977 * 3 2 1 7 7 C 1.39168 * 119.99970 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99706 * 169.39486 * 7 2 1 9 9 N 1.36834 * 119.99981 * 349.39109 * 7 2 1 10 10 C 1.35459 * 124.71280 * 336.08655 * 9 7 2 11 11 C 1.38426 * 109.42488 * 179.97438 * 10 9 7 12 12 C 1.40932 * 126.88965 * 180.02562 * 11 10 9 13 13 C 1.38912 * 119.99985 * 312.20634 * 12 11 10 14 14 C 1.47345 * 121.45765 * 350.49382 * 13 12 11 15 15 O 1.21692 * 120.89374 * 359.97361 * 14 13 12 16 16 N 1.34893 * 118.21491 * 179.73689 * 14 13 12 17 17 C 1.34048 * 121.50371 * 0.55430 * 16 14 13 18 18 S 1.71198 * 118.26129 * 179.66558 * 17 16 14 19 19 N 1.34034 * 123.46894 * 359.69528 * 17 16 14 20 20 C 1.34892 * 121.51426 * 0.02562 * 19 17 16 21 21 O 1.21688 * 120.89673 * 180.02562 * 20 19 17 22 22 C 1.47869 * 106.21695 * 359.97438 * 11 10 9 23 23 C 1.39053 * 133.82527 * 180.02562 * 22 11 10 24 24 C 1.37972 * 119.69569 * 179.97438 * 23 22 11 25 25 C 1.38609 * 120.23809 * 359.97438 * 24 23 22 26 26 C 1.37945 * 120.59086 * 0.02562 * 25 24 23 27 27 C 1.38501 * 124.70805 * 156.05337 * 9 7 2 28 28 H 0.96998 * 119.99565 * 359.97438 * 1 2 3 29 29 H 1.08006 * 125.28707 * 0.24012 * 10 9 7 30 30 H 1.07994 * 119.99521 * 132.20682 * 12 11 10 31 31 H 0.96996 * 119.24818 * 180.23921 * 16 14 13 32 32 H 0.97003 * 119.24570 * 179.97438 * 19 17 16 33 33 H 1.08000 * 120.15221 * 359.94758 * 23 22 11 34 34 H 1.07994 * 119.88237 * 180.02562 * 24 23 22 35 35 H 1.07997 * 119.70823 * 179.97438 * 25 24 23 36 36 H 1.07996 * 120.01764 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3122 0.0000 0.0000 3 14 2.2462 1.6178 0.0000 4 1 3.0999 1.6964 -1.2126 5 1 1.2812 2.7465 -0.0006 6 1 3.1000 1.6965 1.2125 7 6 2.0080 -1.2052 -0.0005 8 1 3.0742 -1.2131 -0.1727 9 7 1.3414 -2.3802 0.2171 10 6 0.1636 -2.4880 0.8774 11 6 -0.2244 -3.8163 0.9131 12 6 -1.3895 -4.3417 1.5068 13 6 -1.7424 -3.9649 2.7964 14 6 -0.8257 -3.1869 3.6482 15 8 0.2716 -2.8521 3.2423 16 7 -1.2375 -2.8515 4.8882 17 6 -2.4410 -3.2191 5.3500 18 16 -2.8754 -2.7557 6.9398 19 7 -3.3220 -3.9307 4.6331 20 6 -3.0473 -4.3311 3.3746 21 8 -3.8557 -4.9765 2.7337 22 6 0.8284 -4.5732 0.2022 23 6 1.0132 -5.9192 -0.0939 24 6 2.1336 -6.3176 -0.7936 25 6 3.0716 -5.3818 -1.2009 26 6 2.8991 -4.0438 -0.9130 27 6 1.7770 -3.6244 -0.2077 28 1 -0.4849 0.8401 0.0004 29 1 -0.3893 -1.6648 1.3055 30 1 -2.0080 -5.0372 0.9591 31 1 -0.6474 -2.3365 5.4603 32 1 -4.1765 -4.1638 5.0286 33 1 0.2832 -6.6495 0.2227 34 1 2.2799 -7.3621 -1.0256 35 1 3.9457 -5.7032 -1.7477 36 1 3.6360 -3.3227 -1.2344 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409382883.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:45 Heat of formation + Delta-G solvation = 30.756410 kcal Electronic energy + Delta-G solvation = -26542.013245 eV Core-core repulsion = 22697.521281 eV Total energy + Delta-G solvation = -3844.491964 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.062 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.76786 -40.72476 -39.00995 -37.42483 -36.69883 -34.46736 -34.19277 -33.03729 -30.94897 -29.28076 -28.39112 -27.01670 -25.40547 -23.60865 -23.33967 -22.13821 -21.05386 -20.44994 -19.31603 -18.63599 -18.15723 -17.50297 -16.88536 -16.42414 -16.00816 -15.61700 -15.54706 -15.15624 -14.78745 -14.53025 -14.40348 -13.85984 -13.79094 -13.48090 -13.30967 -12.97869 -12.63013 -12.27268 -11.92703 -11.88765 -11.68191 -11.52997 -11.23075 -11.02129 -10.84422 -10.58878 -10.49820 -10.36244 -10.09156 -9.71704 -9.35146 -8.73024 -8.26440 -7.95466 -7.73022 -7.34054 -6.89335 -4.86589 0.07598 1.07439 1.48648 1.74847 2.21866 2.25156 2.50852 2.73928 2.79246 2.81954 2.82889 3.38245 3.46880 3.68519 4.14766 4.21796 4.28726 4.54172 4.70676 5.24349 5.39464 5.43183 5.57296 5.65359 5.85742 5.89255 5.95411 6.10784 6.21581 6.34982 6.43311 6.50486 6.57460 6.58803 6.66792 6.83553 6.95736 7.01535 7.09304 7.38226 7.49487 7.58078 7.89319 7.91312 8.32931 8.72897 9.73434 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.009764 B = 0.004522 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.902463 B = 6189.824302 C = 8205.505076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.046 3.954 3 Si 0.947 3.053 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.261 1.261 7 C -0.337 4.337 8 H 0.118 0.882 9 N -0.249 5.249 10 C 0.195 3.805 11 C -0.297 4.297 12 C 0.211 3.789 13 C -0.386 4.386 14 C 0.546 3.454 15 O -0.458 6.458 16 N -0.614 5.614 17 C 0.572 3.428 18 S -0.586 6.586 19 N -0.617 5.617 20 C 0.561 3.439 21 O -0.501 6.501 22 C -0.048 4.048 23 C -0.104 4.104 24 C -0.135 4.135 25 C -0.140 4.140 26 C -0.091 4.091 27 C 0.045 3.955 28 H 0.292 0.708 29 H 0.179 0.821 30 H 0.135 0.865 31 H 0.439 0.561 32 H 0.439 0.561 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.818 -4.590 0.037 4.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.167 4.167 3 Si 0.770 3.230 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.185 1.185 7 C -0.465 4.465 8 H 0.135 0.865 9 N 0.094 4.906 10 C 0.043 3.957 11 C -0.302 4.302 12 C 0.189 3.811 13 C -0.394 4.394 14 C 0.338 3.662 15 O -0.329 6.329 16 N -0.262 5.262 17 C 0.218 3.782 18 S -0.454 6.454 19 N -0.264 5.264 20 C 0.355 3.645 21 O -0.377 6.377 22 C -0.051 4.051 23 C -0.122 4.122 24 C -0.153 4.153 25 C -0.159 4.159 26 C -0.110 4.110 27 C -0.057 4.057 28 H 0.103 0.897 29 H 0.196 0.804 30 H 0.152 0.848 31 H 0.284 0.716 32 H 0.283 0.717 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.937 -4.141 -0.074 4.247 hybrid contribution 0.308 0.796 -0.307 0.907 sum 1.246 -3.346 -0.381 3.590 Atomic orbital electron populations 1.69705 1.06720 1.30645 1.38839 1.25701 0.95848 1.01261 0.93854 0.85629 0.79226 0.78030 0.80096 1.18738 1.19666 1.18528 1.20125 0.94489 0.81594 1.50287 0.86458 1.40136 1.14349 1.04537 1.31545 1.22714 0.87214 0.95758 0.89970 1.17883 1.01052 0.93356 1.17874 1.21019 0.88206 0.84763 0.87144 1.21034 0.96885 1.23414 0.98115 1.18828 0.87723 0.79532 0.80109 1.91024 1.20756 1.50214 1.70943 1.44405 1.14534 1.49535 1.17682 1.21930 0.82527 0.80336 0.93389 1.93713 1.83980 1.68251 0.99475 1.44155 1.19326 1.47731 1.15225 1.18830 0.87763 0.78188 0.79740 1.90866 1.49656 1.37871 1.59278 1.18864 0.95137 0.92703 0.98381 1.20297 0.98101 0.93537 1.00307 1.20767 0.94969 0.98722 1.00881 1.20598 0.99941 0.92144 1.03221 1.20108 0.95974 0.95868 0.99097 1.18596 0.98252 0.85485 1.03333 0.89693 0.80427 0.84775 0.71634 0.71656 0.86743 0.86733 0.86563 0.86571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -18.71 10.95 55.51 0.61 -18.10 16 2 C 0.05 0.99 5.34 -17.47 -0.09 0.90 16 3 Si 0.95 16.62 29.57 -169.99 -5.03 11.60 16 4 H -0.26 -4.50 7.11 56.52 0.40 -4.10 16 5 H -0.27 -4.74 7.11 56.52 0.40 -4.33 16 6 H -0.26 -4.59 7.11 56.52 0.40 -4.19 16 7 C -0.34 -7.56 9.85 -14.97 -0.15 -7.71 16 8 H 0.12 2.45 7.86 -52.49 -0.41 2.04 16 9 N -0.25 -5.64 2.87 -59.06 -0.17 -5.81 16 10 C 0.20 4.31 6.84 -15.88 -0.11 4.21 16 11 C -0.30 -5.90 4.83 -104.87 -0.51 -6.41 16 12 C 0.21 3.62 9.61 -38.31 -0.37 3.25 16 13 C -0.39 -6.39 6.02 -102.24 -0.62 -7.01 16 14 C 0.55 9.26 7.73 -12.50 -0.10 9.16 16 15 O -0.46 -9.19 13.32 5.20 0.07 -9.12 16 16 N -0.61 -8.77 5.15 -14.21 -0.07 -8.84 16 17 C 0.57 8.05 7.77 -88.23 -0.69 7.37 16 18 S -0.59 -9.39 30.63 -107.50 -3.29 -12.68 16 19 N -0.62 -8.13 5.15 -14.21 -0.07 -8.20 16 20 C 0.56 8.57 7.95 -12.50 -0.10 8.47 16 21 O -0.50 -8.48 17.40 5.20 0.09 -8.39 16 22 C -0.05 -0.94 6.33 -104.88 -0.66 -1.60 16 23 C -0.10 -1.73 10.09 -39.38 -0.40 -2.12 16 24 C -0.13 -2.01 10.04 -39.54 -0.40 -2.41 16 25 C -0.14 -2.14 10.02 -39.55 -0.40 -2.54 16 26 C -0.09 -1.64 9.91 -39.40 -0.39 -2.03 16 27 C 0.05 0.95 6.72 -83.79 -0.56 0.39 16 28 H 0.29 6.10 8.30 -40.82 -0.34 5.76 16 29 H 0.18 4.12 6.16 -52.48 -0.32 3.80 16 30 H 0.13 2.02 7.79 -52.49 -0.41 1.61 16 31 H 0.44 5.65 8.65 -40.82 -0.35 5.30 16 32 H 0.44 4.91 8.65 -40.82 -0.35 4.55 16 33 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 36 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 335.05 15.07 5.05 5.05 Total: -1.00 -26.47 335.05 -11.02 -37.50 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -2.68 Total: 15.09 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -5.53 Total: 1.92 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: 0.29 Total: -40.96 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: 0.16 Total: -17.51 kcal Atomic # 14 Polarization: 16.62 SS G_CDS: -5.03 Total: 11.60 kcal Atomic # 16 Polarization: -9.39 SS G_CDS: -3.29 Total: -12.68 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -26.47 -11.02 -37.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409382883.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.255 kcal (2) G-P(sol) polarization free energy of solvation -26.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds