Wall clock time and date at job start Tue Mar 31 2020 06:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00089 * 2 1 4 4 H 1.48501 * 109.47205 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47129 * 299.99841 * 3 2 1 6 6 H 1.48502 * 109.47220 * 60.00068 * 3 2 1 7 7 C 1.37877 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00174 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00266 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47272 * 179.97438 * 9 7 2 11 11 N 1.40151 * 126.22121 * 270.28567 * 10 9 7 12 12 C 1.30628 * 108.00192 * 180.17106 * 11 10 9 13 13 C 1.47257 * 125.76273 * 179.85579 * 12 11 10 14 14 C 1.36190 * 125.95489 * 343.78673 * 13 12 11 15 15 C 1.40814 * 106.72483 * 179.75560 * 14 13 12 16 16 C 1.34811 * 107.06594 * 0.36747 * 15 14 13 17 17 O 1.34274 * 108.71052 * 359.62812 * 16 15 14 18 18 N 1.38244 * 108.46513 * 359.58895 * 12 11 10 19 19 C 1.46505 * 125.86853 * 180.26353 * 18 12 11 20 20 C 1.50706 * 109.46913 * 266.89434 * 19 18 12 21 21 C 1.38234 * 119.99706 * 272.47289 * 20 19 18 22 22 C 1.38233 * 119.99563 * 179.77156 * 21 20 19 23 23 C 1.38240 * 120.00337 * 0.50481 * 22 21 20 24 24 C 1.38238 * 119.99442 * 359.74916 * 23 22 21 25 25 C 1.38230 * 120.00039 * 92.75245 * 20 19 18 26 26 C 1.34781 * 108.26872 * 0.26464 * 18 12 11 27 27 S 1.71191 * 126.15126 * 179.97438 * 26 18 12 28 28 H 0.97004 * 119.99895 * 0.02562 * 1 2 3 29 29 H 1.09008 * 109.46991 * 59.99569 * 9 7 2 30 30 H 1.09000 * 109.46661 * 300.00290 * 9 7 2 31 31 H 1.07992 * 126.63952 * 359.97438 * 14 13 12 32 32 H 1.07994 * 126.46690 * 180.27946 * 15 14 13 33 33 H 1.07993 * 125.63849 * 179.88718 * 16 15 14 34 34 H 1.09000 * 109.47157 * 26.89061 * 19 18 12 35 35 H 1.09001 * 109.47254 * 146.89316 * 19 18 12 36 36 H 1.07995 * 120.00232 * 0.02562 * 21 20 19 37 37 H 1.07999 * 119.99920 * 180.23715 * 22 21 20 38 38 H 1.07997 * 120.00411 * 179.72725 * 23 22 21 39 39 H 1.08002 * 119.99366 * 179.97438 * 24 23 22 40 40 H 1.08003 * 120.00108 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 7 2.7453 -4.2385 -1.1301 12 6 3.5473 -5.1854 -0.7217 13 6 4.3212 -6.0907 -1.5877 14 6 4.1067 -6.3047 -2.9154 15 6 5.0761 -7.2346 -3.3378 16 6 5.8219 -7.5464 -2.2589 17 8 5.3654 -6.8515 -1.2044 18 7 3.5512 -5.1899 0.6607 19 6 4.3250 -6.0951 1.5140 20 6 3.4828 -7.2933 1.8692 21 6 2.6547 -7.2525 2.9753 22 6 1.8786 -8.3499 3.2983 23 6 1.9383 -9.4917 2.5214 24 6 2.7704 -9.5342 1.4183 25 6 3.5426 -8.4350 1.0923 26 6 2.7207 -4.2184 1.0887 27 16 2.3833 -3.8245 2.7202 28 1 -0.4850 0.8401 -0.0004 29 1 0.6245 -2.5571 -0.8897 30 1 0.6239 -2.5566 0.8903 31 1 3.3434 -5.8469 -3.5269 32 1 5.1982 -7.6255 -4.3371 33 1 6.6519 -8.2371 -2.2459 34 1 5.2171 -6.4234 0.9805 35 1 4.6179 -5.5738 2.4253 36 1 2.6110 -6.3620 3.5847 37 1 1.2287 -8.3167 4.1603 38 1 1.3353 -10.3506 2.7763 39 1 2.8174 -10.4264 0.8115 40 1 4.1927 -8.4683 0.2304 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000524735076.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:01 Heat of formation + Delta-G solvation = 136.822364 kcal Electronic energy + Delta-G solvation = -26692.208362 eV Core-core repulsion = 22988.148857 eV Total energy + Delta-G solvation = -3704.059505 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.094 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.02958 -42.07138 -39.24798 -35.66238 -33.97946 -33.25906 -32.42965 -31.45930 -30.91581 -29.83039 -27.90325 -26.44789 -24.30028 -23.24902 -22.72304 -22.31377 -21.55094 -21.47484 -20.56082 -18.26964 -17.39912 -17.22424 -16.65791 -16.41197 -16.02381 -15.88578 -15.56759 -15.10432 -15.04576 -14.86083 -13.96204 -13.47172 -13.45629 -13.35297 -13.25892 -12.96884 -12.71171 -12.52934 -12.44526 -11.92873 -11.55043 -11.44411 -11.21482 -11.01733 -10.86046 -10.74700 -10.71191 -10.33951 -10.29991 -10.26237 -9.33628 -8.96727 -8.92078 -8.72499 -8.61394 -7.03508 -6.85077 -6.23718 -4.30431 0.74810 1.08389 1.38689 1.74526 1.86721 2.00431 2.12735 2.61136 2.95414 3.15145 3.25209 3.32764 3.38780 3.77598 4.27176 4.34408 4.42695 4.56757 4.62755 4.71655 4.81047 4.93587 4.97261 5.12497 5.14219 5.28091 5.41505 5.44951 5.51655 5.56102 5.64587 5.73001 5.89180 6.06694 6.07647 6.36653 6.41548 6.51134 6.56660 6.57406 6.83778 6.87778 6.95662 7.16529 7.66747 7.71564 7.81829 8.68385 9.34100 10.84733 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.011078 B = 0.004150 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.889936 B = 6744.694332 C = 8556.054608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.071 3.929 3 Si 0.910 3.090 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.278 1.278 7 C -0.532 4.532 8 H 0.063 0.937 9 C 0.265 3.735 10 N -0.321 5.321 11 N -0.237 5.237 12 C 0.313 3.687 13 C 0.042 3.958 14 C -0.131 4.131 15 C -0.211 4.211 16 C -0.016 4.016 17 O -0.169 6.169 18 N -0.490 5.490 19 C 0.159 3.841 20 C -0.119 4.119 21 C -0.080 4.080 22 C -0.125 4.125 23 C -0.110 4.110 24 C -0.132 4.132 25 C -0.098 4.098 26 C 0.462 3.538 27 S -0.597 6.597 28 H 0.269 0.731 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.163 0.837 32 H 0.159 0.841 33 H 0.212 0.788 34 H 0.106 0.894 35 H 0.119 0.881 36 H 0.148 0.852 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.428 -21.498 -3.824 24.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.133 4.133 3 Si 0.737 3.263 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.204 1.204 7 C -0.570 4.570 8 H 0.081 0.919 9 C 0.149 3.851 10 N -0.112 5.112 11 N -0.062 5.062 12 C 0.038 3.962 13 C -0.010 4.010 14 C -0.154 4.154 15 C -0.230 4.230 16 C -0.085 4.085 17 O -0.064 6.064 18 N -0.192 5.192 19 C 0.038 3.962 20 C -0.120 4.120 21 C -0.099 4.099 22 C -0.143 4.143 23 C -0.128 4.128 24 C -0.150 4.150 25 C -0.117 4.117 26 C 0.102 3.898 27 S -0.467 6.467 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.181 0.819 32 H 0.176 0.824 33 H 0.229 0.771 34 H 0.124 0.876 35 H 0.137 0.863 36 H 0.165 0.835 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 9.663 -20.498 -3.355 22.908 hybrid contribution 0.827 0.331 -0.568 1.056 sum 10.490 -20.167 -3.923 23.068 Atomic orbital electron populations 1.69918 1.05994 1.27715 1.48902 1.24836 0.94986 0.99287 0.94177 0.86241 0.79912 0.82352 0.77804 1.19661 1.20712 1.20402 1.21104 0.93523 0.89032 1.53390 0.91860 1.20233 0.85064 0.78430 1.01336 1.50508 1.34542 1.27299 0.98856 1.77609 1.11070 1.06064 1.11408 1.20684 0.98416 0.95958 0.81187 1.18118 0.92457 0.98620 0.91840 1.21936 1.01292 0.99436 0.92737 1.21838 0.98198 1.02211 1.00732 1.24309 1.01211 0.98640 0.84344 1.84062 1.38834 1.46091 1.37461 1.46376 1.38516 1.29377 1.04901 1.20831 0.91882 0.87399 0.96062 1.19880 1.00331 0.94622 0.97190 1.21685 0.93180 0.98970 0.96065 1.21233 0.99588 0.93306 1.00212 1.21227 0.98292 0.98122 0.95208 1.21050 0.97612 0.98431 0.97902 1.21055 0.99049 0.93002 0.98580 1.23690 0.86145 0.84398 0.95597 1.92961 1.78478 1.80806 0.94499 0.92174 0.92176 0.89925 0.81925 0.82380 0.77111 0.87566 0.86262 0.83462 0.85770 0.86176 0.86180 0.86342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.47 13.29 55.43 0.74 -24.73 16 2 C 0.07 1.98 5.46 -17.82 -0.10 1.89 16 3 Si 0.91 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.53 -14.93 9.39 -34.44 -0.32 -15.25 16 8 H 0.06 1.83 7.81 -52.48 -0.41 1.42 16 9 C 0.26 6.90 5.98 -5.19 -0.03 6.87 16 10 N -0.32 -7.46 3.60 -63.19 -0.23 -7.69 16 11 N -0.24 -4.84 12.55 32.48 0.41 -4.43 16 12 C 0.31 5.37 7.83 -153.91 -1.20 4.17 16 13 C 0.04 0.55 7.02 -36.65 -0.26 0.29 16 14 C -0.13 -1.46 10.83 -39.34 -0.43 -1.89 16 15 C -0.21 -1.65 10.88 -39.82 -0.43 -2.08 16 16 C -0.02 -0.11 12.08 29.52 0.36 0.25 16 17 O -0.17 -1.76 7.65 4.52 0.03 -1.72 16 18 N -0.49 -8.64 2.75 -116.61 -0.32 -8.96 16 19 C 0.16 2.22 5.75 -5.19 -0.03 2.19 16 20 C -0.12 -1.60 5.46 -104.62 -0.57 -2.17 16 21 C -0.08 -1.14 9.67 -39.58 -0.38 -1.52 16 22 C -0.13 -1.54 10.05 -39.58 -0.40 -1.93 16 23 C -0.11 -1.18 10.05 -39.58 -0.40 -1.58 16 24 C -0.13 -1.40 10.05 -39.58 -0.40 -1.79 16 25 C -0.10 -1.14 9.69 -39.59 -0.38 -1.53 16 26 C 0.46 10.08 7.85 -86.82 -0.68 9.40 16 27 S -0.60 -14.07 28.22 -107.50 -3.03 -17.10 16 28 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.06 1.59 8.14 -51.92 -0.42 1.17 16 30 H 0.08 2.31 7.67 -51.93 -0.40 1.91 16 31 H 0.16 1.76 8.06 -52.49 -0.42 1.33 16 32 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.21 0.54 8.06 -52.49 -0.42 0.12 16 34 H 0.11 1.22 6.11 -51.93 -0.32 0.90 16 35 H 0.12 1.69 7.69 -51.93 -0.40 1.29 16 36 H 0.15 2.33 6.64 -52.49 -0.35 1.98 16 37 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.12 1.21 6.95 -52.48 -0.36 0.85 16 LS Contribution 364.62 15.07 5.49 5.49 Total: -1.00 -33.35 364.62 -11.92 -45.27 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -4.33 Total: 1.85 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -5.66 Total: -4.70 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: 0.60 Total: -45.81 kcal Atomic # 8 Polarization: -1.76 SS G_CDS: 0.03 Total: -1.72 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -14.07 SS G_CDS: -3.03 Total: -17.10 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.35 -11.92 -45.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000524735076.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.094 kcal (2) G-P(sol) polarization free energy of solvation -33.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds