Wall clock time and date at job start Tue Mar 31 2020 05:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21642 * 120.00005 * 0.02562 * 14 13 3 16 16 C 1.47206 * 120.00081 * 179.97438 * 14 13 3 17 17 N 1.35660 * 126.21856 * 359.69315 * 16 14 13 18 18 C 1.30557 * 109.07078 * 179.78758 * 17 16 14 19 19 N 1.35780 * 108.95602 * 0.55332 * 18 17 16 20 20 C 1.36321 * 107.61979 * 359.57903 * 19 18 17 21 21 Br 1.89097 * 126.60707 * 180.11622 * 20 19 18 22 22 C 1.47064 * 110.99940 * 179.50887 * 19 18 17 23 23 C 1.54346 * 105.57941 * 17.19069 * 22 19 18 24 24 C 1.51608 * 141.24991 * 180.21728 * 18 17 16 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 31 31 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 32 32 H 1.09004 * 110.22457 * 136.22041 * 22 19 18 33 33 H 1.09000 * 110.22483 * 258.15850 * 22 19 18 34 34 H 1.09000 * 110.94536 * 92.22745 * 23 22 19 35 35 H 1.09002 * 110.93997 * 215.91985 * 23 22 19 36 36 H 1.09004 * 110.47204 * 44.99994 * 24 18 17 37 37 H 1.08997 * 110.57991 * 282.45259 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3419 2.6318 0.4317 16 6 0.0455 3.3219 2.6251 17 7 0.8053 3.4256 3.7442 18 6 0.1350 4.0763 4.6562 19 7 -1.0851 4.4029 4.1578 20 6 -1.1480 3.9330 2.8797 21 35 -2.6078 4.0962 1.6888 22 6 -1.8846 5.1296 5.1555 23 6 -0.8772 5.6188 6.2176 24 6 0.2601 4.5820 6.0799 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8292 -0.0609 -2.9500 31 1 2.2719 2.1231 1.9979 32 1 -2.3850 5.9793 4.6910 33 1 -2.6171 4.4624 5.6099 34 1 -0.5204 6.6217 5.9834 35 1 -1.3158 5.5858 7.2149 36 1 1.2293 5.0570 6.2320 37 1 0.1206 3.7666 6.7897 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585089512.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:23 Heat of formation + Delta-G solvation = 33.636633 kcal Electronic energy + Delta-G solvation = -21753.591456 eV Core-core repulsion = 18385.444076 eV Total energy + Delta-G solvation = -3368.147381 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.55165 -38.69895 -36.46078 -34.86668 -32.74573 -32.11788 -31.05579 -30.70714 -28.69400 -27.18756 -26.79060 -23.75115 -22.60895 -21.57016 -20.28452 -19.82063 -19.08914 -17.49520 -16.89768 -16.26218 -15.44155 -15.20412 -14.80446 -14.40002 -14.17983 -13.86821 -13.67587 -13.25742 -13.13189 -12.65337 -12.55527 -12.09089 -11.95193 -11.56844 -11.34295 -11.14196 -10.96785 -10.91767 -10.72035 -10.68865 -10.24180 -10.04562 -10.03367 -9.71120 -9.48712 -8.95084 -8.87877 -8.38074 -8.35136 -7.62278 -6.01464 -4.09692 1.25601 1.46389 2.45798 2.50052 3.34084 3.38324 3.40615 3.48790 3.98015 4.12800 4.20065 4.27246 4.36389 4.52978 4.83476 4.96864 5.02741 5.19916 5.29603 5.33204 5.46927 5.65375 5.78144 6.37817 6.51912 6.60242 6.67209 6.79937 7.19035 7.32433 7.49984 7.59042 7.68823 7.76922 7.91035 8.04508 8.29654 8.84668 8.90401 9.27940 9.57214 11.03971 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.016411 B = 0.003867 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.722673 B = 7239.618813 C = 8471.550103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.051 0.949 5 C -0.531 4.531 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.884 5.884 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.688 5.688 14 C 0.579 3.421 15 O -0.530 6.530 16 C 0.014 3.986 17 N -0.442 5.442 18 C 0.204 3.796 19 N -0.472 5.472 20 C 0.042 3.958 21 Br 0.042 6.958 22 C 0.100 3.900 23 C -0.128 4.128 24 C -0.039 4.039 25 H 0.039 0.961 26 H 0.021 0.979 27 H 0.050 0.950 28 H 0.031 0.969 29 H 0.099 0.901 30 H 0.264 0.736 31 H 0.396 0.604 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.910 11.006 18.192 24.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.069 0.931 5 C -0.569 4.569 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.521 5.521 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.335 5.335 14 C 0.362 3.638 15 O -0.408 6.408 16 C -0.120 4.120 17 N -0.162 5.162 18 C -0.061 4.061 19 N -0.158 5.158 20 C -0.153 4.153 21 Br 0.125 6.875 22 C -0.021 4.021 23 C -0.166 4.166 24 C -0.078 4.078 25 H 0.058 0.942 26 H 0.040 0.960 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.117 0.883 30 H 0.074 0.926 31 H 0.229 0.771 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.386 10.674 16.881 24.043 hybrid contribution 0.709 0.257 0.443 0.875 sum -12.677 10.931 17.324 24.090 Atomic orbital electron populations 1.21837 0.98312 0.97937 1.01330 1.21930 0.92657 0.99754 1.02234 1.18822 0.94203 0.89195 0.80845 0.93110 1.21221 0.90766 1.38761 1.06193 0.92073 1.24864 0.98477 0.94893 0.95390 1.69888 1.35094 1.37795 1.09346 0.86526 0.85072 0.78269 0.77326 1.20176 1.21227 1.20233 1.46324 1.14048 1.54488 1.18649 1.16719 0.83515 0.79330 0.84271 1.90833 1.51488 1.60210 1.38251 1.21098 0.90246 1.04965 0.95712 1.70381 1.30015 1.17041 0.98765 1.24565 0.83603 1.00673 0.97285 1.46312 1.16634 1.43168 1.09664 1.22479 0.98312 1.08525 0.85986 1.96782 1.36673 1.97190 1.56890 1.22497 0.94674 0.96960 0.87987 1.22736 0.94765 0.99848 0.99218 1.20703 1.01034 0.98653 0.87447 0.94242 0.95999 0.93039 0.95051 0.88280 0.92626 0.77066 0.88776 0.88763 0.89142 0.87708 0.87842 0.88102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.51 37.16 0.32 -2.89 16 2 C -0.13 -3.23 5.45 -26.73 -0.15 -3.38 16 3 C 0.27 7.17 2.24 -69.08 -0.15 7.02 16 4 H 0.05 1.52 7.58 -51.93 -0.39 1.13 16 5 C -0.53 -14.65 8.73 -34.44 -0.30 -14.95 16 6 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -25.33 11.29 55.43 0.63 -24.70 16 9 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.69 -16.06 5.02 -56.08 -0.28 -16.34 16 14 C 0.58 13.02 6.37 -12.62 -0.08 12.94 16 15 O -0.53 -12.81 12.41 5.24 0.07 -12.75 16 16 C 0.01 0.27 6.97 -83.17 -0.58 -0.31 16 17 N -0.44 -7.74 11.00 -6.93 -0.08 -7.81 16 18 C 0.20 2.68 8.58 -154.24 -1.32 1.35 16 19 N -0.47 -5.93 3.58 -109.91 -0.39 -6.33 16 20 C 0.04 0.70 7.76 -16.19 -0.13 0.58 16 21 Br 0.04 0.64 32.38 -68.01 -2.20 -1.57 16 22 C 0.10 0.68 7.77 -3.03 -0.02 0.65 16 23 C -0.13 -0.52 7.15 -25.23 -0.18 -0.70 16 24 C -0.04 -0.27 6.85 -26.64 -0.18 -0.45 16 25 H 0.04 0.92 5.64 -51.93 -0.29 0.62 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 1.26 7.84 -51.93 -0.41 0.86 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.10 2.75 5.95 -51.93 -0.31 2.44 16 30 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.40 8.74 8.25 -40.82 -0.34 8.40 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.10 0.13 8.14 -51.93 -0.42 -0.29 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 324.67 15.07 4.89 4.89 Total: -1.00 -33.23 324.67 -9.93 -43.16 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -4.66 Total: 3.62 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -2.87 Total: 1.59 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.12 Total: -55.18 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.07 Total: -12.75 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 35 Polarization: 0.64 SS G_CDS: -2.20 Total: -1.57 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.23 -9.93 -43.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585089512.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.792 kcal (2) G-P(sol) polarization free energy of solvation -33.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds